Wall clock time and date at job start Mon Mar 30 2020 02:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47157 * 2 1 4 4 H 1.09005 * 109.47328 * 305.62068 * 3 2 1 5 5 C 1.50696 * 109.47347 * 185.62624 * 3 2 1 6 6 H 1.08004 * 120.00146 * 240.00496 * 5 3 2 7 7 C 1.37873 * 120.00182 * 59.99554 * 5 3 2 8 8 N 1.31516 * 120.00230 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00064 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47175 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47568 * 299.99898 * 9 7 5 12 12 H 1.48505 * 109.47511 * 60.00322 * 9 7 5 13 13 N 1.46898 * 109.47179 * 65.62217 * 3 2 1 14 14 C 1.46904 * 110.99880 * 204.18745 * 13 3 2 15 15 H 1.09001 * 110.64766 * 327.68302 * 14 13 3 16 16 C 1.54604 * 110.72398 * 204.53532 * 14 13 3 17 17 C 1.53990 * 105.14022 * 219.68828 * 16 14 13 18 18 N 1.47903 * 107.05656 * 358.76883 * 17 16 14 19 19 C 1.48530 * 105.82055 * 25.33554 * 18 17 16 20 20 H 1.08997 * 109.47558 * 54.31992 * 1 2 3 21 21 H 1.09000 * 109.47245 * 174.32902 * 1 2 3 22 22 H 1.09008 * 109.46766 * 294.32523 * 1 2 3 23 23 H 1.09000 * 109.46951 * 240.00026 * 2 1 3 24 24 H 1.08999 * 109.47157 * 119.99900 * 2 1 3 25 25 H 0.96994 * 120.00183 * 180.02562 * 8 7 5 26 26 H 1.00900 * 110.99923 * 328.14023 * 13 3 2 27 27 H 1.09003 * 110.30227 * 338.59918 * 16 14 13 28 28 H 1.08991 * 110.30753 * 100.66804 * 16 14 13 29 29 H 1.09000 * 109.92040 * 118.12408 * 17 16 14 30 30 H 1.08998 * 109.91579 * 239.42548 * 17 16 14 31 31 H 1.00901 * 111.00611 * 264.81843 * 18 17 16 32 32 H 1.08999 * 110.66669 * 202.35518 * 19 18 17 33 33 H 1.09004 * 110.66597 * 79.22736 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8354 5 6 3.5405 1.4448 -0.1393 6 1 4.1538 1.8865 0.6322 7 6 4.1305 0.8829 -1.2515 8 7 3.3838 0.3453 -2.1912 9 14 5.9905 0.8852 -1.4238 10 1 6.3704 0.2254 -2.6988 11 1 6.4861 2.2851 -1.4236 12 1 6.5941 0.1462 -0.2858 13 7 1.6643 2.0947 1.2615 14 6 1.6026 3.5537 1.1018 15 1 2.3350 3.8914 0.3686 16 6 1.8200 4.2623 2.4585 17 6 0.8291 5.4410 2.4601 18 7 0.1190 5.4125 1.1630 19 6 0.1743 4.0016 0.7020 20 1 -0.3634 0.5994 -0.8347 21 1 -0.3634 -1.0226 -0.1015 22 1 -0.3633 0.4234 0.9365 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.7989 -0.0503 -2.9735 26 1 0.7896 1.7317 1.6097 27 1 1.5991 3.5813 3.2805 28 1 2.8443 4.6270 2.5350 29 1 0.1161 5.3258 3.2764 30 1 1.3705 6.3811 2.5662 31 1 0.5593 6.0283 0.4959 32 1 0.0414 3.9443 -0.3783 33 1 -0.5755 3.3995 1.2154 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086729858.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:35 Heat of formation + Delta-G solvation = -6.673590 kcal Electronic energy + Delta-G solvation = -13209.224748 eV Core-core repulsion = 11076.160053 eV Total energy + Delta-G solvation = -2133.064695 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.46093 -35.55767 -32.21532 -30.96453 -28.92575 -27.37690 -25.52424 -22.73777 -21.41090 -19.83135 -19.52831 -16.44298 -16.13140 -15.12294 -14.76118 -14.13512 -13.40657 -13.20056 -12.93006 -12.65032 -11.98870 -11.95591 -11.50550 -11.17739 -11.06712 -10.93953 -10.75598 -10.65896 -10.14873 -9.96993 -9.69107 -9.54431 -9.16748 -8.54576 -8.34283 -7.12988 -5.97642 -4.02171 3.32626 3.37023 3.40401 4.42176 4.50439 5.13063 5.25786 5.29933 5.41434 5.54392 5.74497 5.92189 6.02674 6.16072 6.17000 6.21157 6.26079 6.41209 6.52256 6.67142 6.84562 6.96157 7.08067 7.17927 7.51387 7.53607 7.77573 7.91132 8.30581 8.39003 8.75724 9.05697 9.62922 11.07457 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034300 B = 0.011000 C = 0.009164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.122127 B = 2544.913318 C = 3054.774562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.495 4.495 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.289 1.289 11 H -0.279 1.279 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.066 3.934 15 H 0.085 0.915 16 C -0.144 4.144 17 C 0.041 3.959 18 N -0.678 5.678 19 C 0.013 3.987 20 H 0.042 0.958 21 H 0.037 0.963 22 H 0.035 0.965 23 H 0.099 0.901 24 H 0.040 0.960 25 H 0.260 0.740 26 H 0.319 0.681 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.334 0.666 32 H 0.070 0.930 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 5.452 5.099 8.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.534 4.534 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.214 1.214 11 H -0.205 1.205 12 H -0.203 1.203 13 N -0.306 5.306 14 C -0.047 4.047 15 H 0.103 0.897 16 C -0.184 4.184 17 C -0.089 4.089 18 N -0.304 5.304 19 C -0.118 4.118 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.117 0.883 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.137 0.863 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.520 5.345 5.423 8.855 hybrid contribution 1.166 -0.095 -0.950 1.507 sum -3.354 5.250 4.473 7.669 Atomic orbital electron populations 1.21881 0.99552 0.99738 0.99542 1.21762 0.91268 1.00357 1.03048 1.19167 0.95345 0.89998 0.84286 0.98118 1.21179 0.91337 1.36650 1.04200 0.92252 1.24958 0.98077 0.95638 0.95855 1.69860 1.34754 1.39402 1.09559 0.86614 0.85809 0.78107 0.77151 1.21432 1.20486 1.20310 1.60660 1.35352 1.01481 1.33156 1.23025 0.95301 0.90617 0.95739 0.89663 1.22774 0.99152 0.97191 0.99241 1.22731 0.95140 0.97958 0.93094 1.62727 1.54875 1.07635 1.05209 1.23885 0.98219 0.89428 1.00273 0.93867 0.94382 0.94624 0.88269 0.94083 0.93017 0.86325 0.90964 0.91779 0.91216 0.92180 0.85156 0.91129 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.64 37.16 0.36 -2.53 16 2 C -0.13 -2.95 5.37 -26.73 -0.14 -3.10 16 3 C 0.22 5.39 1.91 -68.87 -0.13 5.26 16 4 H 0.00 0.03 7.87 -51.93 -0.41 -0.38 16 5 C -0.49 -13.61 8.50 -34.44 -0.29 -13.90 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.39 11.29 55.43 0.63 -24.76 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.68 -14.17 6.11 -99.01 -0.61 -14.78 16 14 C 0.07 1.23 3.13 -65.85 -0.21 1.02 16 15 H 0.09 1.80 7.67 -51.93 -0.40 1.40 16 16 C -0.14 -2.27 6.67 -25.37 -0.17 -2.44 16 17 C 0.04 0.56 7.52 -2.76 -0.02 0.53 16 18 N -0.68 -9.91 7.51 -110.09 -0.83 -10.74 16 19 C 0.01 0.22 7.13 -1.90 -0.01 0.20 16 20 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 21 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.03 0.61 6.65 -51.92 -0.35 0.27 16 23 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.32 6.16 6.09 -39.29 -0.24 5.93 16 27 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.33 4.48 8.92 -39.29 -0.35 4.13 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.21 7.78 -51.93 -0.40 0.80 16 LS Contribution 263.01 15.07 3.96 3.96 Total: -1.00 -27.82 263.01 -7.95 -35.77 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.38 Total: 7.58 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.71 Total: -13.52 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.81 Total: -50.28 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.82 -7.95 -35.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086729858.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.097 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds