Wall clock time and date at job start Mon Mar 30 2020 02:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47157 * 2 1 4 4 H 1.09005 * 109.47328 * 305.62068 * 3 2 1 5 5 C 1.50696 * 109.47347 * 185.62624 * 3 2 1 6 6 H 1.08004 * 120.00146 * 240.00496 * 5 3 2 7 7 C 1.37873 * 120.00182 * 59.99554 * 5 3 2 8 8 N 1.31516 * 120.00230 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00064 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47175 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47568 * 299.99898 * 9 7 5 12 12 H 1.48505 * 109.47511 * 60.00322 * 9 7 5 13 13 N 1.46898 * 109.47179 * 65.62217 * 3 2 1 14 14 C 1.46904 * 110.99880 * 204.18745 * 13 3 2 15 15 H 1.09001 * 110.64766 * 327.68302 * 14 13 3 16 16 C 1.54604 * 110.72398 * 204.53532 * 14 13 3 17 17 C 1.53990 * 105.14022 * 219.68828 * 16 14 13 18 18 N 1.47903 * 107.05656 * 358.76883 * 17 16 14 19 19 C 1.48530 * 105.82055 * 25.33554 * 18 17 16 20 20 H 1.08997 * 109.47558 * 54.31992 * 1 2 3 21 21 H 1.09000 * 109.47245 * 174.32902 * 1 2 3 22 22 H 1.09008 * 109.46766 * 294.32523 * 1 2 3 23 23 H 1.09000 * 109.46951 * 240.00026 * 2 1 3 24 24 H 1.08999 * 109.47157 * 119.99900 * 2 1 3 25 25 H 0.96994 * 120.00183 * 180.02562 * 8 7 5 26 26 H 1.00900 * 110.99923 * 328.14023 * 13 3 2 27 27 H 1.09003 * 110.30227 * 338.59918 * 16 14 13 28 28 H 1.08991 * 110.30753 * 100.66804 * 16 14 13 29 29 H 1.09000 * 109.92040 * 118.12408 * 17 16 14 30 30 H 1.08998 * 109.91579 * 239.42548 * 17 16 14 31 31 H 1.00901 * 111.00611 * 264.81843 * 18 17 16 32 32 H 1.08999 * 110.66669 * 202.35518 * 19 18 17 33 33 H 1.09004 * 110.66597 * 79.22736 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8354 5 6 3.5405 1.4448 -0.1393 6 1 4.1538 1.8865 0.6322 7 6 4.1305 0.8829 -1.2515 8 7 3.3838 0.3453 -2.1912 9 14 5.9905 0.8852 -1.4238 10 1 6.3704 0.2254 -2.6988 11 1 6.4861 2.2851 -1.4236 12 1 6.5941 0.1462 -0.2858 13 7 1.6643 2.0947 1.2615 14 6 1.6026 3.5537 1.1018 15 1 2.3350 3.8914 0.3686 16 6 1.8200 4.2623 2.4585 17 6 0.8291 5.4410 2.4601 18 7 0.1190 5.4125 1.1630 19 6 0.1743 4.0016 0.7020 20 1 -0.3634 0.5994 -0.8347 21 1 -0.3634 -1.0226 -0.1015 22 1 -0.3633 0.4234 0.9365 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.7989 -0.0503 -2.9735 26 1 0.7896 1.7317 1.6097 27 1 1.5991 3.5813 3.2805 28 1 2.8443 4.6270 2.5350 29 1 0.1161 5.3258 3.2764 30 1 1.3705 6.3811 2.5662 31 1 0.5593 6.0283 0.4959 32 1 0.0414 3.9443 -0.3783 33 1 -0.5755 3.3995 1.2154 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086729858.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:34 Heat of formation + Delta-G solvation = -26.993248 kcal Electronic energy + Delta-G solvation = -13210.105874 eV Core-core repulsion = 11076.160053 eV Total energy + Delta-G solvation = -2133.945822 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.87058 -37.29262 -34.19233 -32.62062 -30.20649 -29.08461 -27.28123 -24.58100 -22.68062 -21.56016 -21.09735 -18.34795 -17.60076 -16.87504 -16.39152 -15.92924 -14.75962 -14.72730 -14.61252 -14.23818 -13.69963 -13.36640 -13.16673 -12.90603 -12.70781 -12.57847 -12.43564 -12.20998 -11.99036 -11.55003 -11.51038 -11.27731 -11.07097 -10.45164 -9.85645 -8.81616 -8.07932 -6.20578 1.39651 1.40992 1.48754 2.41928 3.15394 3.22655 3.73720 3.96749 4.10776 4.15168 4.43997 4.51365 4.56069 4.57399 4.67542 4.76498 4.93286 5.03688 5.07973 5.19943 5.26564 5.29102 5.37445 5.59443 5.70837 5.77335 5.89223 6.35891 6.39933 6.51952 6.93198 7.00180 7.48621 8.94444 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034300 B = 0.011000 C = 0.009164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.122127 B = 2544.913318 C = 3054.774562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.228 3.772 4 H -0.030 1.030 5 C -0.514 4.514 6 H 0.046 0.954 7 C 0.010 3.990 8 N -0.918 5.918 9 Si 0.954 3.046 10 H -0.283 1.283 11 H -0.275 1.275 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.061 3.939 15 H 0.052 0.948 16 C -0.137 4.137 17 C 0.047 3.953 18 N -0.675 5.675 19 C 0.025 3.975 20 H 0.037 0.963 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.035 0.965 25 H 0.261 0.739 26 H 0.329 0.671 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.341 0.659 32 H 0.059 0.941 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 6.122 6.174 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.119 3.881 4 H -0.013 1.013 5 C -0.553 4.553 6 H 0.064 0.936 7 C -0.188 4.188 8 N -0.558 5.558 9 Si 0.780 3.220 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.052 4.052 15 H 0.070 0.930 16 C -0.177 4.177 17 C -0.083 4.083 18 N -0.302 5.302 19 C -0.107 4.107 20 H 0.056 0.944 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.149 0.851 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.156 0.844 32 H 0.077 0.923 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.945 6.033 6.512 10.161 hybrid contribution 1.292 -0.275 -1.270 1.833 sum -3.652 5.758 5.241 8.600 Atomic orbital electron populations 1.21744 0.96144 1.01145 1.00540 1.21596 0.94338 0.99007 1.01118 1.18908 0.93777 0.90625 0.84749 1.01280 1.21444 0.92996 1.36760 1.04110 0.93574 1.25668 1.02220 0.95333 0.95596 1.69987 1.36254 1.39759 1.09820 0.85678 0.80877 0.78194 0.77243 1.20818 1.20047 1.19922 1.60566 1.36195 1.02905 1.31189 1.23038 0.96015 0.89319 0.96846 0.93003 1.22714 0.99908 0.97810 0.97222 1.22769 0.94873 0.97880 0.92744 1.62743 1.55197 1.06366 1.05865 1.23687 0.96632 0.90702 0.99686 0.94403 0.92465 0.92334 0.91457 0.94621 0.93033 0.85140 0.90809 0.91975 0.89892 0.89946 0.84380 0.92278 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 9.64 71.98 0.69 -4.46 16 2 C -0.12 -5.76 5.37 30.59 0.16 -5.60 16 3 C 0.23 11.40 1.91 44.17 0.08 11.49 16 4 H -0.03 -1.69 7.87 -2.38 -0.02 -1.70 16 5 C -0.51 -28.89 8.50 25.60 0.22 -28.67 16 6 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 7 C 0.01 0.57 5.29 84.65 0.45 1.01 16 8 N -0.92 -52.99 11.29 21.45 0.24 -52.75 16 9 Si 0.95 44.46 29.54 68.60 2.03 46.48 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.68 -28.30 6.11 -467.15 -2.86 -31.16 16 14 C 0.06 2.23 3.13 46.12 0.14 2.38 16 15 H 0.05 2.25 7.67 -2.39 -0.02 2.23 16 16 C -0.14 -4.10 6.67 31.47 0.21 -3.89 16 17 C 0.05 1.14 7.52 86.44 0.65 1.79 16 18 N -0.67 -18.26 7.51 -502.22 -3.77 -22.03 16 19 C 0.02 0.78 7.13 86.65 0.62 1.40 16 20 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.06 1.90 6.65 -2.38 -0.02 1.88 16 23 H 0.07 3.63 5.94 -2.39 -0.01 3.61 16 24 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.33 12.35 6.09 -89.69 -0.55 11.80 16 27 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.34 8.51 8.92 -89.69 -0.80 7.71 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 2.48 7.78 -2.39 -0.02 2.46 16 Total: -1.00 -59.72 263.01 -1.39 -61.11 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.26 Total: 22.89 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 3.23 Total: -24.56 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -6.39 Total: -105.93 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -59.72 -1.39 -61.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086729858.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.121 kcal (2) G-P(sol) polarization free energy of solvation -59.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds