Wall clock time and date at job start Mon Mar 30 2020 02:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47324 * 2 1 4 4 H 1.09004 * 109.46753 * 306.21083 * 3 2 1 5 5 C 1.50698 * 109.47275 * 186.21178 * 3 2 1 6 6 H 1.07998 * 119.99872 * 245.31788 * 5 3 2 7 7 C 1.37879 * 119.99991 * 65.31446 * 5 3 2 8 8 N 1.31508 * 120.00199 * 8.37231 * 7 5 3 9 9 Si 1.86806 * 119.99730 * 188.64174 * 7 5 3 10 10 H 1.48503 * 109.46944 * 179.72708 * 9 7 5 11 11 H 1.48501 * 109.47199 * 299.72860 * 9 7 5 12 12 H 1.48498 * 109.47088 * 59.72811 * 9 7 5 13 13 N 1.46897 * 109.47180 * 66.20773 * 3 2 1 14 14 C 1.46899 * 111.00044 * 258.01822 * 13 3 2 15 15 H 1.08999 * 110.28767 * 34.69630 * 14 13 3 16 16 C 1.54262 * 110.32203 * 156.82405 * 14 13 3 17 17 C 1.54387 * 105.06031 * 118.89787 * 16 14 13 18 18 N 1.48565 * 104.59307 * 23.85147 * 17 16 14 19 19 C 1.48564 * 104.22152 * 320.51914 * 18 17 16 20 20 H 1.09000 * 109.47004 * 300.82690 * 1 2 3 21 21 H 1.09007 * 109.46732 * 60.82444 * 1 2 3 22 22 H 1.08993 * 109.47661 * 180.82111 * 1 2 3 23 23 H 1.09004 * 109.47034 * 240.00097 * 2 1 3 24 24 H 1.09001 * 109.47221 * 119.99811 * 2 1 3 25 25 H 0.97003 * 119.99992 * 357.37993 * 8 7 5 26 26 H 1.00897 * 111.00084 * 21.97514 * 13 3 2 27 27 H 1.09007 * 110.32449 * 237.78946 * 16 14 13 28 28 H 1.08996 * 110.32371 * 359.89645 * 16 14 13 29 29 H 1.08994 * 110.40889 * 142.62691 * 17 16 14 30 30 H 1.08991 * 110.40921 * 264.95628 * 17 16 14 31 31 H 1.00898 * 110.99842 * 200.95973 * 18 17 16 32 32 H 1.09000 * 110.40735 * 280.70114 * 19 18 17 33 33 H 1.09001 * 110.41194 * 158.26391 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5887 1.9874 -0.8292 5 6 3.5392 1.4453 -0.1537 6 1 4.1637 1.8059 0.6501 7 6 4.1133 0.9873 -1.3206 8 7 3.3571 0.7035 -2.3584 9 14 5.9649 0.7628 -1.4250 10 1 6.3270 0.2572 -2.7735 11 1 6.6357 2.0664 -1.1885 12 1 6.4039 -0.2137 -0.3959 13 7 1.6765 2.0904 1.2673 14 6 0.5145 2.9721 1.0934 15 1 -0.1722 2.5519 0.3586 16 6 -0.2056 3.1816 2.4414 17 6 -0.1236 4.7000 2.7084 18 7 0.0474 5.3077 1.3636 19 6 0.9710 4.3815 0.6592 20 1 -0.3633 0.5266 0.8825 21 1 -0.3633 0.5010 -0.8974 22 1 -0.3634 -1.0275 0.0147 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.3924 0.7800 -2.2909 26 1 1.5058 1.4051 1.9878 27 1 -1.2463 2.8658 2.3678 28 1 0.3021 2.6287 3.2317 29 1 -1.0442 5.0547 3.1715 30 1 0.7328 4.9287 3.3425 31 1 0.4456 6.2323 1.4326 32 1 2.0000 4.5607 0.9710 33 1 0.8746 4.4966 -0.4204 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086729862.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:39 Heat of formation + Delta-G solvation = -7.245579 kcal Electronic energy + Delta-G solvation = -13271.902289 eV Core-core repulsion = 11138.812790 eV Total energy + Delta-G solvation = -2133.089499 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.48100 -35.87556 -32.40645 -30.85786 -29.14267 -27.49211 -25.18439 -22.88828 -21.34974 -19.96592 -19.70350 -16.86294 -16.26061 -15.41895 -14.38174 -14.04635 -13.70028 -13.30165 -12.98560 -12.55549 -12.14863 -11.97842 -11.67947 -11.42582 -11.00565 -10.90412 -10.71525 -10.46479 -10.36131 -10.12766 -10.02834 -9.90475 -8.66787 -8.37045 -8.21849 -7.28966 -6.27737 -3.96827 3.47334 3.48831 3.67692 4.48873 4.59616 5.00806 5.08217 5.26196 5.37296 5.40807 5.71051 5.88680 5.92983 5.96418 6.02518 6.14225 6.17717 6.21010 6.43985 6.47249 6.59454 6.70136 6.86915 6.92363 7.15442 7.35452 7.50560 8.00029 8.34300 8.42982 8.70273 8.96709 9.72290 11.08246 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040205 B = 0.010299 C = 0.009022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.271432 B = 2717.969983 C = 3102.775666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.149 4.149 3 C 0.206 3.794 4 H 0.022 0.978 5 C -0.575 4.575 6 H 0.055 0.945 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 1.068 2.932 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.670 5.670 14 C 0.083 3.917 15 H 0.047 0.953 16 C -0.127 4.127 17 C 0.040 3.960 18 N -0.672 5.672 19 C 0.048 3.952 20 H 0.041 0.959 21 H 0.045 0.955 22 H 0.039 0.961 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.268 0.732 26 H 0.325 0.675 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.331 0.669 32 H 0.056 0.944 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 3.858 7.610 10.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C 0.098 3.902 4 H 0.039 0.961 5 C -0.613 4.613 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.553 5.553 9 Si 0.897 3.103 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.301 5.301 14 C -0.028 4.028 15 H 0.065 0.935 16 C -0.165 4.165 17 C -0.089 4.089 18 N -0.300 5.300 19 C -0.082 4.082 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.143 0.857 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.146 0.854 32 H 0.075 0.925 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.716 3.700 6.190 8.617 hybrid contribution -1.110 -0.082 1.381 1.773 sum -5.826 3.618 7.571 10.215 Atomic orbital electron populations 1.21920 0.98751 0.99868 1.00391 1.22322 0.92367 1.02139 1.02017 1.19367 0.96442 0.88104 0.86298 0.96070 1.21960 0.90827 1.44941 1.03618 0.92694 1.25763 1.06790 0.94246 0.92069 1.70813 1.06929 1.47286 1.30311 0.83553 0.74525 0.76441 0.75795 1.21003 1.21603 1.21591 1.60826 1.34533 1.24514 1.10257 1.22229 0.91445 0.94033 0.95076 0.93530 1.22521 1.00326 0.95778 0.97910 1.22798 1.00148 0.94754 0.91247 1.63737 1.47113 1.05026 1.14133 1.22953 0.94936 0.91608 0.98712 0.94039 0.93603 0.94217 0.91024 0.93489 0.92040 0.85745 0.91731 0.91035 0.90980 0.94263 0.85446 0.92533 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.90 37.16 0.33 -2.53 16 2 C -0.15 -3.37 4.93 -26.73 -0.13 -3.50 16 3 C 0.21 5.05 1.69 -68.87 -0.12 4.93 16 4 H 0.02 0.58 6.92 -51.93 -0.36 0.22 16 5 C -0.57 -16.04 8.77 -34.44 -0.30 -16.34 16 6 H 0.05 1.58 7.83 -52.49 -0.41 1.16 16 7 C 0.01 0.41 5.17 -17.82 -0.09 0.32 16 8 N -0.92 -27.29 13.01 55.43 0.72 -26.57 16 9 Si 1.07 25.37 29.91 -169.99 -5.08 20.29 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 13 N -0.67 -14.03 5.84 -99.51 -0.58 -14.61 16 14 C 0.08 1.53 2.32 -66.33 -0.15 1.38 16 15 H 0.05 0.91 6.39 -51.93 -0.33 0.58 16 16 C -0.13 -1.89 6.67 -25.34 -0.17 -2.06 16 17 C 0.04 0.55 7.47 -2.18 -0.02 0.54 16 18 N -0.67 -10.15 7.62 -109.66 -0.84 -10.98 16 19 C 0.05 0.86 7.14 -2.18 -0.02 0.85 16 20 H 0.04 0.72 6.51 -51.93 -0.34 0.38 16 21 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.82 6.31 -51.93 -0.33 1.49 16 24 H 0.05 1.04 8.01 -51.93 -0.42 0.62 16 25 H 0.27 7.94 6.03 -40.82 -0.25 7.70 16 26 H 0.32 6.37 7.35 -39.29 -0.29 6.08 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.02 7.55 -51.93 -0.39 0.63 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.33 4.32 8.92 -39.29 -0.35 3.97 16 32 H 0.06 1.11 8.06 -51.93 -0.42 0.69 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 259.49 15.07 3.91 3.91 Total: -1.00 -29.25 259.49 -7.75 -37.00 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.21 Total: 7.39 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.67 Total: -16.42 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.70 Total: -52.16 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.25 -7.75 -37.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086729862.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.752 kcal (2) G-P(sol) polarization free energy of solvation -29.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds