Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.50428 * 2 1 4 4 C 1.53120 * 109.49987 * 239.92295 * 2 1 3 5 5 C 1.53126 * 109.15845 * 182.40050 * 4 2 1 6 6 H 1.08994 * 109.50357 * 297.71374 * 5 4 2 7 7 N 1.46895 * 109.50192 * 177.59682 * 5 4 2 8 8 C 1.53039 * 109.27638 * 57.65423 * 5 4 2 9 9 N 1.46847 * 109.52361 * 300.82000 * 8 5 4 10 10 C 1.46903 * 110.99873 * 185.83987 * 9 8 5 11 11 C 1.50694 * 109.47066 * 66.04633 * 10 9 8 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.46842 * 111.19872 * 61.74466 * 9 8 5 20 20 H 1.09003 * 109.47124 * 180.08572 * 1 2 3 21 21 H 1.09004 * 109.47138 * 300.07542 * 1 2 3 22 22 H 1.08995 * 109.47560 * 60.08042 * 1 2 3 23 23 H 1.08994 * 109.52378 * 62.50180 * 4 2 1 24 24 H 1.08995 * 109.57342 * 302.33537 * 4 2 1 25 25 H 1.00900 * 110.99999 * 180.20295 * 7 5 4 26 26 H 1.00907 * 111.00041 * 304.14814 * 7 5 4 27 27 H 1.08998 * 109.46102 * 180.80199 * 8 5 4 28 28 H 1.09005 * 109.45451 * 60.83183 * 8 5 4 29 29 H 1.09007 * 109.47052 * 306.04318 * 10 9 8 30 30 H 1.09003 * 109.46808 * 186.05011 * 10 9 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.46520 * 58.27108 * 19 9 8 33 33 H 1.09004 * 109.46585 * 178.23905 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7234 -1.2490 5 6 3.5712 -0.7714 -1.2111 6 1 3.9677 0.2436 -1.2298 7 7 4.0675 -1.5142 -2.3772 8 6 4.0230 -1.4729 0.0718 9 7 3.5093 -0.7424 1.2375 10 6 4.0374 -1.3066 2.4869 11 6 5.5260 -1.0813 2.5500 12 1 6.0297 -0.5705 1.7427 13 6 6.2454 -1.5283 3.6381 14 7 5.6322 -2.1508 4.6211 15 14 8.0908 -1.2496 3.7160 16 1 8.7921 -2.4010 3.0933 17 1 8.4349 -0.0049 2.9828 18 1 8.5126 -1.1214 5.1342 19 6 2.0410 -0.7239 1.2478 20 1 -0.3633 -1.0277 0.0015 21 1 -0.3633 0.5150 0.8893 22 1 -0.3634 0.5125 -0.8906 23 1 1.7156 -0.1863 -2.1398 24 1 1.6452 -1.7386 -1.2707 25 1 5.0753 -1.5626 -2.3729 26 1 3.6615 -2.4371 -2.4177 27 1 5.1121 -1.4962 0.1087 28 1 3.6374 -2.4924 0.0832 29 1 3.8300 -2.3763 2.5187 30 1 3.5596 -0.8186 3.3364 31 1 6.1384 -2.4655 5.3864 32 1 1.6649 -1.7469 1.2538 33 1 1.6906 -0.2030 2.1389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087042047.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = -16.265479 kcal Electronic energy + Delta-G solvation = -13141.163465 eV Core-core repulsion = 11007.682834 eV Total energy + Delta-G solvation = -2133.480631 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.75954 -34.37372 -33.75227 -32.17237 -28.14488 -27.14494 -26.05383 -23.64321 -21.10833 -20.57270 -19.33742 -16.31656 -15.66902 -15.20596 -14.56297 -14.31457 -13.94906 -13.82044 -13.21396 -12.61304 -12.27170 -12.05390 -11.68784 -11.42182 -11.29295 -10.89931 -10.75373 -10.72068 -10.29701 -10.25909 -9.99306 -9.84102 -9.16673 -8.50598 -8.36567 -7.23940 -6.04704 -4.06305 3.29608 3.36064 3.40592 4.39981 4.65885 4.94703 5.21588 5.23587 5.30393 5.44100 5.52383 5.75846 5.84171 5.96537 5.99852 6.03806 6.16127 6.24554 6.36091 6.44556 6.54394 6.69073 6.75591 7.26053 7.31134 7.38108 7.65541 7.78662 8.08991 8.20233 8.54655 9.01321 9.57969 11.06134 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043561 B = 0.009459 C = 0.008150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.623416 B = 2959.329188 C = 3434.962974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.077 0.923 4 C -0.102 4.102 5 C 0.088 3.912 6 H 0.085 0.915 7 N -0.845 5.845 8 C 0.037 3.963 9 N -0.534 5.534 10 C 0.193 3.807 11 C -0.507 4.507 12 H 0.062 0.938 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.282 1.282 17 H -0.273 1.273 18 H -0.286 1.286 19 C 0.060 3.940 20 H 0.050 0.950 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.340 0.660 26 H 0.333 0.667 27 H 0.080 0.920 28 H 0.014 0.986 29 H -0.012 1.012 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.019 0.981 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 1.586 -9.450 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.140 4.140 5 C -0.024 4.024 6 H 0.103 0.897 7 N -0.372 5.372 8 C -0.093 4.093 9 N -0.258 5.258 10 C 0.068 3.932 11 C -0.546 4.546 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.208 1.208 17 H -0.197 1.197 18 H -0.212 1.212 19 C -0.069 4.069 20 H 0.069 0.931 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.153 0.847 26 H 0.145 0.855 27 H 0.098 0.902 28 H 0.033 0.967 29 H 0.006 0.994 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.550 2.570 -9.738 12.014 hybrid contribution 1.132 -1.536 1.077 2.191 sum -5.418 1.035 -8.661 10.269 Atomic orbital electron populations 1.21771 0.95524 1.01411 1.01352 1.21155 0.94521 1.00466 0.94747 0.90492 1.21592 0.94797 1.00083 0.97518 1.21567 0.94841 0.98425 0.87578 0.89686 1.59109 1.12429 1.22367 1.43335 1.22780 1.01228 0.94113 0.91229 1.61978 1.05022 1.54676 1.04151 1.19714 0.95487 0.92593 0.85412 1.21156 0.92159 1.36515 1.04777 0.91945 1.25006 0.98778 0.95307 0.95592 1.69963 1.35892 1.39161 1.08790 0.86500 0.85144 0.78577 0.77223 1.20784 1.19735 1.21189 1.22080 0.89926 0.97687 0.97181 0.93096 0.92675 0.92900 0.91895 0.92903 0.84747 0.85505 0.90184 0.96735 0.99374 0.95142 0.92916 0.96287 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.20 37.16 0.34 -1.41 16 2 C -0.09 -1.35 2.88 -90.54 -0.26 -1.61 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.10 -1.48 4.83 -26.60 -0.13 -1.61 16 5 C 0.09 1.40 3.41 -67.63 -0.23 1.17 16 6 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 7 N -0.84 -11.63 9.26 -4.60 -0.04 -11.67 16 8 C 0.04 0.73 4.87 -3.83 -0.02 0.71 16 9 N -0.53 -11.72 4.65 -236.11 -1.10 -12.82 16 10 C 0.19 5.13 4.72 -4.98 -0.02 5.11 16 11 C -0.51 -14.39 8.43 -34.44 -0.29 -14.68 16 12 H 0.06 1.75 7.14 -52.49 -0.37 1.38 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 15 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 C 0.06 1.11 4.74 -3.84 -0.02 1.09 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.34 4.41 9.04 -39.29 -0.36 4.05 16 26 H 0.33 4.22 8.98 -39.29 -0.35 3.87 16 27 H 0.08 1.71 6.72 -51.93 -0.35 1.36 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H -0.01 -0.33 8.12 -51.92 -0.42 -0.75 16 30 H 0.03 0.86 7.98 -51.93 -0.41 0.45 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 1.26 8.01 -51.93 -0.42 0.84 16 LS Contribution 264.17 15.07 3.98 3.98 Total: -1.00 -29.61 264.17 -7.79 -37.41 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.62 Total: 2.33 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -0.73 Total: -9.76 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.40 Total: -50.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.61 -7.79 -37.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087042047.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.140 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds