Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.50428 * 2 1 4 4 C 1.53120 * 109.49987 * 239.92295 * 2 1 3 5 5 C 1.53126 * 109.15845 * 182.40050 * 4 2 1 6 6 H 1.08994 * 109.50357 * 297.71374 * 5 4 2 7 7 N 1.46895 * 109.50192 * 177.59682 * 5 4 2 8 8 C 1.53039 * 109.27638 * 57.65423 * 5 4 2 9 9 N 1.46847 * 109.52361 * 300.82000 * 8 5 4 10 10 C 1.46903 * 110.99873 * 185.83987 * 9 8 5 11 11 C 1.50694 * 109.47066 * 66.04633 * 10 9 8 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.46842 * 111.19872 * 61.74466 * 9 8 5 20 20 H 1.09003 * 109.47124 * 180.08572 * 1 2 3 21 21 H 1.09004 * 109.47138 * 300.07542 * 1 2 3 22 22 H 1.08995 * 109.47560 * 60.08042 * 1 2 3 23 23 H 1.08994 * 109.52378 * 62.50180 * 4 2 1 24 24 H 1.08995 * 109.57342 * 302.33537 * 4 2 1 25 25 H 1.00900 * 110.99999 * 180.20295 * 7 5 4 26 26 H 1.00907 * 111.00041 * 304.14814 * 7 5 4 27 27 H 1.08998 * 109.46102 * 180.80199 * 8 5 4 28 28 H 1.09005 * 109.45451 * 60.83183 * 8 5 4 29 29 H 1.09007 * 109.47052 * 306.04318 * 10 9 8 30 30 H 1.09003 * 109.46808 * 186.05011 * 10 9 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.46520 * 58.27108 * 19 9 8 33 33 H 1.09004 * 109.46585 * 178.23905 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7234 -1.2490 5 6 3.5712 -0.7714 -1.2111 6 1 3.9677 0.2436 -1.2298 7 7 4.0675 -1.5142 -2.3772 8 6 4.0230 -1.4729 0.0718 9 7 3.5093 -0.7424 1.2375 10 6 4.0374 -1.3066 2.4869 11 6 5.5260 -1.0813 2.5500 12 1 6.0297 -0.5705 1.7427 13 6 6.2454 -1.5283 3.6381 14 7 5.6322 -2.1508 4.6211 15 14 8.0908 -1.2496 3.7160 16 1 8.7921 -2.4010 3.0933 17 1 8.4349 -0.0049 2.9828 18 1 8.5126 -1.1214 5.1342 19 6 2.0410 -0.7239 1.2478 20 1 -0.3633 -1.0277 0.0015 21 1 -0.3633 0.5150 0.8893 22 1 -0.3634 0.5125 -0.8906 23 1 1.7156 -0.1863 -2.1398 24 1 1.6452 -1.7386 -1.2707 25 1 5.0753 -1.5626 -2.3729 26 1 3.6615 -2.4371 -2.4177 27 1 5.1121 -1.4962 0.1087 28 1 3.6374 -2.4924 0.0832 29 1 3.8300 -2.3763 2.5187 30 1 3.5596 -0.8186 3.3364 31 1 6.1384 -2.4655 5.3864 32 1 1.6649 -1.7469 1.2538 33 1 1.6906 -0.2030 2.1389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087042047.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = -38.354366 kcal Electronic energy + Delta-G solvation = -13142.121311 eV Core-core repulsion = 11007.682834 eV Total energy + Delta-G solvation = -2134.438477 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.23816 -36.09385 -35.06530 -34.15600 -29.59371 -28.95508 -27.38072 -25.51709 -22.73092 -22.08243 -20.71500 -18.50277 -17.04587 -16.79134 -16.18089 -15.99960 -15.47392 -15.28742 -14.54923 -14.23031 -13.87164 -13.48694 -13.35815 -13.04588 -12.77787 -12.65601 -12.54770 -12.15116 -12.08070 -11.64180 -11.53979 -11.36486 -11.05913 -10.66676 -9.67620 -9.06746 -8.24944 -6.35951 1.37861 1.39707 1.51635 2.36686 3.06664 3.19130 3.60623 3.90997 3.98266 4.14958 4.17214 4.36377 4.63740 4.64390 4.72882 4.79675 4.84742 4.90399 5.02666 5.08539 5.19045 5.25216 5.31782 5.36985 5.51813 5.61575 6.00033 6.11074 6.34768 6.55826 6.62372 6.80117 7.34055 8.86293 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043561 B = 0.009459 C = 0.008150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.623416 B = 2959.329188 C = 3434.962974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 H 0.073 0.927 4 C -0.096 4.096 5 C 0.100 3.900 6 H 0.077 0.923 7 N -0.835 5.835 8 C 0.041 3.959 9 N -0.541 5.541 10 C 0.207 3.793 11 C -0.525 4.525 12 H 0.062 0.938 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.972 3.028 16 H -0.272 1.272 17 H -0.264 1.264 18 H -0.280 1.280 19 C 0.057 3.943 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.057 0.943 25 H 0.346 0.654 26 H 0.343 0.657 27 H 0.057 0.943 28 H 0.007 0.993 29 H -0.044 1.044 30 H 0.003 0.997 31 H 0.265 0.735 32 H 0.014 0.986 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 2.186 -11.088 12.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.092 0.908 4 C -0.134 4.134 5 C -0.013 4.013 6 H 0.095 0.905 7 N -0.363 5.363 8 C -0.089 4.089 9 N -0.266 5.266 10 C 0.081 3.919 11 C -0.563 4.563 12 H 0.080 0.920 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.796 3.204 16 H -0.197 1.197 17 H -0.188 1.188 18 H -0.206 1.206 19 C -0.071 4.071 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.159 0.841 26 H 0.155 0.845 27 H 0.075 0.925 28 H 0.025 0.975 29 H -0.026 1.026 30 H 0.021 0.979 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.521 3.169 -11.407 13.516 hybrid contribution 1.081 -1.748 1.588 2.597 sum -5.440 1.421 -9.819 11.315 Atomic orbital electron populations 1.21725 0.92903 1.02104 1.02694 1.21120 0.96592 0.99580 0.92870 0.90809 1.21572 0.93244 1.00642 0.97947 1.21417 0.96149 0.97638 0.86069 0.90515 1.59108 1.12993 1.22905 1.41329 1.22840 0.99805 0.94121 0.92180 1.61927 1.07294 1.54390 1.02969 1.19372 0.95115 0.90411 0.86999 1.21434 0.93102 1.36728 1.05029 0.91988 1.25969 1.04125 0.94708 0.95000 1.70093 1.38032 1.39925 1.09443 0.85343 0.78615 0.78930 0.77504 1.19707 1.18847 1.20554 1.22215 0.87714 0.97945 0.99237 0.92736 0.92339 0.90618 0.89719 0.92421 0.84144 0.84496 0.92455 0.97507 1.02590 0.97889 0.92599 0.96765 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.20 71.98 0.66 -2.30 16 2 C -0.08 -2.32 2.88 -10.74 -0.03 -2.35 16 3 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.10 -2.55 4.83 30.68 0.15 -2.40 16 5 C 0.10 3.04 3.41 44.97 0.15 3.20 16 6 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 7 N -0.84 -21.22 9.26 -168.46 -1.56 -22.78 16 8 C 0.04 1.62 4.87 86.33 0.42 2.04 16 9 N -0.54 -24.33 4.65 -900.91 -4.19 -28.52 16 10 C 0.21 11.52 4.72 85.55 0.40 11.92 16 11 C -0.52 -30.47 8.43 25.60 0.22 -30.25 16 12 H 0.06 3.53 7.14 -2.91 -0.02 3.51 16 13 C 0.00 0.00 5.46 84.66 0.46 0.46 16 14 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 15 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 C 0.06 2.13 4.74 86.33 0.41 2.54 16 20 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.35 8.36 9.04 -89.69 -0.81 7.55 16 26 H 0.34 7.89 8.98 -89.69 -0.81 7.08 16 27 H 0.06 2.49 6.72 -2.39 -0.02 2.48 16 28 H 0.01 0.27 8.14 -2.38 -0.02 0.26 16 29 H -0.04 -2.63 8.12 -2.38 -0.02 -2.65 16 30 H 0.00 0.18 7.98 -2.39 -0.02 0.16 16 31 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 2.29 8.01 -2.39 -0.02 2.27 16 Total: -1.00 -64.32 264.17 -1.12 -65.45 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -0.54 Total: 13.14 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 2.84 Total: -17.15 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -5.46 Total: -108.19 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.32 -1.12 -65.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087042047.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.093 kcal (2) G-P(sol) polarization free energy of solvation -64.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds