Wall clock time and date at job start Mon Mar 30 2020 02:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.50370 * 2 1 4 4 C 1.53120 * 109.50265 * 120.07731 * 2 1 3 5 5 C 1.53120 * 109.15835 * 177.63149 * 4 2 1 6 6 H 1.08999 * 109.53597 * 62.30972 * 5 4 2 7 7 N 1.46903 * 109.50464 * 182.40405 * 5 4 2 8 8 C 1.53041 * 109.28215 * 302.34563 * 5 4 2 9 9 N 1.46846 * 109.52003 * 59.17728 * 8 5 4 10 10 C 1.46901 * 110.99738 * 174.15981 * 9 8 5 11 11 C 1.50701 * 109.46921 * 66.04780 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.46839 * 111.20112 * 298.26039 * 9 8 5 20 20 H 1.09008 * 109.46748 * 299.92243 * 1 2 3 21 21 H 1.08992 * 109.47084 * 59.92032 * 1 2 3 22 22 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.52534 * 57.73227 * 4 2 1 24 24 H 1.08995 * 109.52402 * 297.53367 * 4 2 1 25 25 H 1.00893 * 111.00554 * 179.80777 * 7 5 4 26 26 H 1.00905 * 111.00075 * 303.76299 * 7 5 4 27 27 H 1.09002 * 109.45916 * 299.16269 * 8 5 4 28 28 H 1.08994 * 109.46318 * 179.19673 * 8 5 4 29 29 H 1.09002 * 109.47401 * 306.04808 * 10 9 8 30 30 H 1.09001 * 109.46874 * 186.04821 * 10 9 8 31 31 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.46586 * 181.75949 * 19 9 8 33 33 H 1.09001 * 109.46136 * 301.72478 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7707 1.2114 6 1 3.9678 0.2444 1.2308 7 7 4.0677 -1.5135 2.3775 8 6 4.0238 -1.4717 -0.0715 9 7 3.5100 -0.7413 -1.2372 10 6 4.0387 -1.3049 -2.4865 11 6 3.5034 -2.7011 -2.6738 12 1 2.8367 -3.1270 -1.9385 13 6 3.8638 -3.4344 -3.7843 14 7 4.6752 -2.9156 -4.6799 15 14 3.1997 -5.1648 -4.0168 16 1 1.9245 -5.1078 -4.7757 17 1 4.1882 -5.9774 -4.7703 18 1 2.9583 -5.7849 -2.6893 19 6 2.0417 -0.7234 -1.2478 20 1 -0.3633 0.5127 0.8908 21 1 -0.3633 0.5150 -0.8892 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6458 -1.7389 1.2693 24 1 1.7152 -0.1866 2.1399 25 1 5.0755 -1.5613 2.3736 26 1 3.7283 -1.1071 3.2365 27 1 3.6389 -2.4914 -0.0832 28 1 5.1129 -1.4944 -0.1081 29 1 5.1272 -1.3365 -2.4389 30 1 3.7297 -0.6816 -3.3256 31 1 4.9291 -3.4317 -5.4610 32 1 1.6913 -0.2025 -2.1388 33 1 1.6661 -1.7466 -1.2541 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087042054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:05 Heat of formation + Delta-G solvation = -14.838794 kcal Electronic energy + Delta-G solvation = -13276.711048 eV Core-core repulsion = 11143.292283 eV Total energy + Delta-G solvation = -2133.418765 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.65276 -34.46456 -33.57140 -32.08233 -28.26090 -26.67683 -26.06659 -23.85093 -20.90153 -20.57011 -19.06921 -16.36477 -15.35931 -15.07589 -14.73120 -14.52430 -14.09599 -13.45455 -12.99175 -12.59000 -12.14261 -12.01104 -11.58772 -11.35900 -11.12368 -10.89966 -10.84224 -10.33578 -10.25592 -10.04898 -9.87090 -9.75388 -9.39063 -8.42105 -8.40687 -7.12854 -5.99889 -4.08873 3.29419 3.36089 3.40150 4.43258 4.60390 5.08318 5.23235 5.31122 5.36129 5.52583 5.64655 5.85393 5.96273 6.01366 6.12884 6.21725 6.29524 6.49093 6.52806 6.57903 6.71747 6.84477 6.96402 7.27630 7.45080 7.54802 7.66024 7.92733 8.10703 8.32567 8.36202 9.01609 9.57892 11.05005 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036362 B = 0.010403 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.845671 B = 2690.767735 C = 2894.957598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.103 4.103 5 C 0.091 3.909 6 H 0.035 0.965 7 N -0.848 5.848 8 C 0.073 3.927 9 N -0.544 5.544 10 C 0.188 3.812 11 C -0.548 4.548 12 H 0.057 0.943 13 C 0.064 3.936 14 N -0.892 5.892 15 Si 0.888 3.112 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.070 3.930 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.339 0.661 26 H 0.334 0.666 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 4.684 10.370 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.141 4.141 5 C -0.021 4.021 6 H 0.053 0.947 7 N -0.378 5.378 8 C -0.056 4.056 9 N -0.268 5.268 10 C 0.063 3.937 11 C -0.587 4.587 12 H 0.076 0.924 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.059 4.059 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.152 0.848 26 H 0.146 0.854 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.512 4.515 9.910 11.788 hybrid contribution -0.080 -1.006 -0.082 1.012 sum -4.592 3.509 9.828 11.402 Atomic orbital electron populations 1.21758 0.95601 1.01609 1.01032 1.21203 0.94598 0.99921 0.95395 0.91257 1.21603 0.94710 1.00789 0.97019 1.21415 0.94926 0.94821 0.90896 0.94678 1.58648 1.15079 1.59473 1.04554 1.21756 0.98964 0.96159 0.88700 1.62363 1.06860 1.53448 1.04102 1.19731 0.95542 0.92867 0.85572 1.21772 1.29224 1.00779 1.06898 0.92444 1.24963 0.94911 0.98096 0.95861 1.69946 1.34430 1.37438 1.11252 0.86649 0.78755 0.84740 0.78234 1.20646 1.21149 1.19906 1.21900 0.89358 0.98828 0.95796 0.93279 0.92687 0.92840 0.91631 0.93164 0.84847 0.85391 0.93712 0.92264 0.95251 0.95040 0.92857 0.91775 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.20 37.16 0.34 -1.57 16 2 C -0.09 -1.46 2.88 -90.54 -0.26 -1.72 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.10 -1.59 4.83 -26.61 -0.13 -1.72 16 5 C 0.09 1.47 3.41 -67.63 -0.23 1.24 16 6 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 7 N -0.85 -11.77 9.25 -4.60 -0.04 -11.82 16 8 C 0.07 1.49 4.71 -3.83 -0.02 1.48 16 9 N -0.54 -12.02 4.86 -236.12 -1.15 -13.17 16 10 C 0.19 4.97 5.13 -4.97 -0.03 4.94 16 11 C -0.55 -15.36 7.74 -34.44 -0.27 -15.63 16 12 H 0.06 1.62 5.84 -52.49 -0.31 1.31 16 13 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 14 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 19 C 0.07 1.40 4.30 -3.84 -0.02 1.38 16 20 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.34 4.30 9.04 -39.30 -0.36 3.95 16 26 H 0.33 3.81 9.00 -39.29 -0.35 3.46 16 27 H 0.04 1.03 7.03 -51.93 -0.37 0.66 16 28 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 29 H 0.03 0.83 8.06 -51.93 -0.42 0.41 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.06 1.31 8.12 -51.93 -0.42 0.89 16 33 H 0.04 0.87 6.57 -51.93 -0.34 0.53 16 LS Contribution 261.08 15.07 3.93 3.93 Total: -1.00 -29.44 261.08 -7.74 -37.17 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.50 Total: 2.76 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -0.70 Total: -9.85 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.45 Total: -50.82 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.44 -7.74 -37.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087042054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.336 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds