Wall clock time and date at job start Mon Mar 30 2020 02:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.50370 * 2 1 4 4 C 1.53120 * 109.50265 * 120.07731 * 2 1 3 5 5 C 1.53120 * 109.15835 * 177.63149 * 4 2 1 6 6 H 1.08999 * 109.53597 * 62.30972 * 5 4 2 7 7 N 1.46903 * 109.50464 * 182.40405 * 5 4 2 8 8 C 1.53041 * 109.28215 * 302.34563 * 5 4 2 9 9 N 1.46846 * 109.52003 * 59.17728 * 8 5 4 10 10 C 1.46901 * 110.99738 * 174.15981 * 9 8 5 11 11 C 1.50701 * 109.46921 * 66.04780 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.46839 * 111.20112 * 298.26039 * 9 8 5 20 20 H 1.09008 * 109.46748 * 299.92243 * 1 2 3 21 21 H 1.08992 * 109.47084 * 59.92032 * 1 2 3 22 22 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.52534 * 57.73227 * 4 2 1 24 24 H 1.08995 * 109.52402 * 297.53367 * 4 2 1 25 25 H 1.00893 * 111.00554 * 179.80777 * 7 5 4 26 26 H 1.00905 * 111.00075 * 303.76299 * 7 5 4 27 27 H 1.09002 * 109.45916 * 299.16269 * 8 5 4 28 28 H 1.08994 * 109.46318 * 179.19673 * 8 5 4 29 29 H 1.09002 * 109.47401 * 306.04808 * 10 9 8 30 30 H 1.09001 * 109.46874 * 186.04821 * 10 9 8 31 31 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.46586 * 181.75949 * 19 9 8 33 33 H 1.09001 * 109.46136 * 301.72478 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7707 1.2114 6 1 3.9678 0.2444 1.2308 7 7 4.0677 -1.5135 2.3775 8 6 4.0238 -1.4717 -0.0715 9 7 3.5100 -0.7413 -1.2372 10 6 4.0387 -1.3049 -2.4865 11 6 3.5034 -2.7011 -2.6738 12 1 2.8367 -3.1270 -1.9385 13 6 3.8638 -3.4344 -3.7843 14 7 4.6752 -2.9156 -4.6799 15 14 3.1997 -5.1648 -4.0168 16 1 1.9245 -5.1078 -4.7757 17 1 4.1882 -5.9774 -4.7703 18 1 2.9583 -5.7849 -2.6893 19 6 2.0417 -0.7234 -1.2478 20 1 -0.3633 0.5127 0.8908 21 1 -0.3633 0.5150 -0.8892 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6458 -1.7389 1.2693 24 1 1.7152 -0.1866 2.1399 25 1 5.0755 -1.5613 2.3736 26 1 3.7283 -1.1071 3.2365 27 1 3.6389 -2.4914 -0.0832 28 1 5.1129 -1.4944 -0.1081 29 1 5.1272 -1.3365 -2.4389 30 1 3.7297 -0.6816 -3.3256 31 1 4.9291 -3.4317 -5.4610 32 1 1.6913 -0.2025 -2.1388 33 1 1.6661 -1.7466 -1.2541 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087042054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:05 Heat of formation + Delta-G solvation = -37.097215 kcal Electronic energy + Delta-G solvation = -13277.676246 eV Core-core repulsion = 11143.292283 eV Total energy + Delta-G solvation = -2134.383963 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19876 -36.18095 -34.91969 -34.10358 -29.73864 -28.55986 -27.42741 -25.78807 -22.64705 -21.98647 -20.60648 -18.49907 -16.91521 -16.63885 -16.22233 -16.05119 -15.65246 -15.13205 -14.54998 -14.29840 -13.79147 -13.39446 -13.20618 -12.94227 -12.83799 -12.68793 -12.46377 -12.14428 -12.04225 -11.81956 -11.51116 -11.33473 -11.01602 -10.63617 -9.57684 -9.05702 -8.17998 -6.38066 1.34304 1.34903 1.46032 2.35089 3.06113 3.18254 3.68967 3.91833 4.04857 4.15414 4.30551 4.52157 4.62663 4.74411 4.79358 4.91926 4.96541 5.04394 5.08406 5.18392 5.23845 5.26550 5.30408 5.38541 5.55791 5.71483 6.02720 6.22635 6.24214 6.55360 6.69643 6.82704 7.33353 8.84322 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036362 B = 0.010403 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.845671 B = 2690.767735 C = 2894.957598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 H 0.077 0.923 4 C -0.099 4.099 5 C 0.102 3.898 6 H 0.043 0.957 7 N -0.850 5.850 8 C 0.077 3.923 9 N -0.542 5.542 10 C 0.200 3.800 11 C -0.557 4.557 12 H 0.053 0.947 13 C 0.011 3.989 14 N -0.925 5.925 15 Si 0.958 3.042 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.271 1.271 19 C 0.070 3.930 20 H 0.077 0.923 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.347 0.653 26 H 0.354 0.646 27 H 0.014 0.986 28 H 0.048 0.952 29 H 0.003 0.997 30 H 0.006 0.994 31 H 0.266 0.734 32 H 0.053 0.947 33 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 4.723 12.070 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 H 0.095 0.905 4 C -0.137 4.137 5 C -0.010 4.010 6 H 0.061 0.939 7 N -0.383 5.383 8 C -0.052 4.052 9 N -0.266 5.266 10 C 0.074 3.926 11 C -0.596 4.596 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.565 5.565 15 Si 0.782 3.218 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.195 1.195 19 C -0.058 4.058 20 H 0.096 0.904 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.160 0.840 26 H 0.168 0.832 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.021 0.979 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -5.739 4.566 11.641 13.759 hybrid contribution 0.336 -0.989 -0.605 1.207 sum -5.403 3.578 11.036 12.798 Atomic orbital electron populations 1.21724 0.93301 1.01811 1.02652 1.21163 0.96439 0.99516 0.93212 0.90455 1.21592 0.93659 1.00425 0.98025 1.21209 0.95797 0.94557 0.89435 0.93913 1.58541 1.15831 1.59279 1.04599 1.21760 0.98224 0.94992 0.90265 1.62317 1.08326 1.52910 1.03001 1.19400 0.93960 0.92223 0.87052 1.21952 1.29166 1.01542 1.06958 0.92917 1.25827 0.95104 1.02382 0.95497 1.70061 1.35460 1.39173 1.11794 0.85561 0.78408 0.79498 0.78287 1.19646 1.20324 1.19527 1.21970 0.87751 0.97982 0.98100 0.90419 0.92361 0.93360 0.93008 0.89635 0.84040 0.83204 0.96745 0.93346 0.97859 0.97543 0.92514 0.92838 0.96675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.20 71.98 0.66 -2.64 16 2 C -0.08 -2.51 2.88 -10.74 -0.03 -2.54 16 3 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.10 -2.78 4.83 30.67 0.15 -2.63 16 5 C 0.10 3.12 3.41 44.97 0.15 3.27 16 6 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 7 N -0.85 -21.64 9.25 -168.45 -1.56 -23.20 16 8 C 0.08 3.16 4.71 86.33 0.41 3.57 16 9 N -0.54 -24.53 4.86 -900.94 -4.38 -28.91 16 10 C 0.20 11.05 5.13 85.56 0.44 11.49 16 11 C -0.56 -32.19 7.74 25.60 0.20 -31.99 16 12 H 0.05 3.05 5.84 -2.91 -0.02 3.03 16 13 C 0.01 0.66 5.46 84.66 0.46 1.12 16 14 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 15 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 19 C 0.07 2.85 4.30 86.33 0.37 3.22 16 20 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 21 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.35 8.13 9.04 -89.70 -0.81 7.32 16 26 H 0.35 6.85 9.00 -89.69 -0.81 6.05 16 27 H 0.01 0.67 7.03 -2.39 -0.02 0.66 16 28 H 0.05 2.05 8.06 -2.39 -0.02 2.03 16 29 H 0.00 0.19 8.06 -2.39 -0.02 0.17 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.05 2.23 8.12 -2.39 -0.02 2.21 16 33 H 0.01 0.68 6.57 -2.39 -0.02 0.66 16 Total: -1.00 -64.33 261.08 -1.34 -65.67 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.53 Total: 12.36 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 2.81 Total: -17.13 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -5.65 Total: -108.08 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.33 -1.34 -65.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087042054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.575 kcal (2) G-P(sol) polarization free energy of solvation -64.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds