Wall clock time and date at job start Mon Mar 30 2020 02:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47304 * 2 1 4 4 H 1.09003 * 109.52608 * 305.07729 * 3 2 1 5 5 C 1.53043 * 109.50061 * 184.99702 * 3 2 1 6 6 C 1.53035 * 109.52722 * 178.67493 * 5 3 2 7 7 H 1.09010 * 109.49509 * 181.35804 * 6 5 3 8 8 N 1.46903 * 109.49945 * 301.42047 * 6 5 3 9 9 C 1.53191 * 109.31572 * 61.37570 * 6 5 3 10 10 N 1.46928 * 108.77050 * 305.36588 * 9 6 5 11 11 C 1.36941 * 120.62702 * 233.62997 * 10 9 6 12 12 H 1.07994 * 120.00102 * 151.82006 * 11 10 9 13 13 C 1.38820 * 119.99871 * 331.81795 * 11 10 9 14 14 N 1.31615 * 119.99827 * 343.08311 * 13 11 10 15 15 Si 1.86798 * 119.99672 * 163.08106 * 13 11 10 16 16 H 1.48499 * 109.47331 * 60.00031 * 15 13 11 17 17 H 1.48500 * 109.46947 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47173 * 299.99718 * 15 13 11 19 19 C 1.46922 * 118.74606 * 53.60540 * 10 9 6 20 20 H 1.09003 * 109.47129 * 300.00222 * 1 2 3 21 21 H 1.09003 * 109.46908 * 59.99967 * 1 2 3 22 22 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47324 * 239.99276 * 2 1 3 24 24 H 1.09003 * 109.46908 * 120.00033 * 2 1 3 25 25 H 1.09005 * 109.45923 * 58.65896 * 5 3 2 26 26 H 1.09002 * 109.45594 * 298.69104 * 5 3 2 27 27 H 1.00904 * 110.99968 * 180.02562 * 8 6 5 28 28 H 1.00896 * 110.99783 * 303.95623 * 8 6 5 29 29 H 1.08997 * 109.58676 * 65.14654 * 9 6 5 30 30 H 1.08998 * 109.58908 * 185.57652 * 9 6 5 31 31 H 0.97000 * 119.99811 * 180.02562 * 14 13 11 32 32 H 1.09005 * 109.58544 * 66.17685 * 19 10 9 33 33 H 1.08995 * 109.58863 * 186.46190 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6049 1.9828 -0.8408 5 6 3.5653 1.4450 -0.1257 6 6 4.0734 2.8882 -0.1590 7 1 5.1575 2.8896 -0.2727 8 7 3.4608 3.5977 -1.2900 9 6 3.6950 3.5889 1.1497 10 7 2.2449 3.4642 1.3507 11 6 1.4731 4.5737 1.5706 12 1 0.4344 4.5762 1.2750 13 6 2.0258 5.6953 2.1737 14 7 3.1632 5.5970 2.8287 15 14 1.1554 7.3438 2.0553 16 1 -0.1938 7.2362 2.6663 17 1 1.9454 8.3736 2.7769 18 1 1.0230 7.7324 0.6282 19 6 1.6385 2.1265 1.3106 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 3.8547 0.9368 -1.0455 26 1 4.0008 0.9262 0.7283 27 1 3.7812 4.5536 -1.3336 28 1 3.6401 3.1166 -2.1586 29 1 4.2208 3.1192 1.9809 30 1 3.9666 4.6429 1.0916 31 1 3.5492 6.3806 3.2504 32 1 1.9967 1.5375 2.1550 33 1 0.5534 2.2155 1.3613 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108005701.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:18 Heat of formation + Delta-G solvation = 6.361649 kcal Electronic energy + Delta-G solvation = -13550.595278 eV Core-core repulsion = 11418.095834 eV Total energy + Delta-G solvation = -2132.499445 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.11812 -34.17524 -33.44061 -30.79843 -28.99548 -27.34468 -25.17023 -23.23277 -21.61859 -20.01603 -18.45570 -16.60837 -15.00647 -14.76176 -14.47356 -14.01925 -13.81709 -13.02715 -12.97274 -12.56464 -12.21224 -11.89573 -11.44756 -10.98341 -10.87917 -10.73986 -10.65735 -10.39078 -10.21077 -9.93632 -9.68743 -9.45293 -9.31135 -8.33958 -7.76073 -6.46799 -5.64989 -3.03558 3.46500 3.51336 3.54162 4.61676 5.20988 5.36750 5.44143 5.52863 5.57253 5.72123 5.86098 5.92315 6.07217 6.20462 6.23657 6.38001 6.47950 6.53253 6.54837 6.63380 6.75316 6.99919 7.03780 7.23048 7.39550 7.68234 7.91873 7.99372 8.21251 8.60375 9.36394 10.01195 10.58979 11.43946 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039229 B = 0.012083 C = 0.010554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.578820 B = 2316.844778 C = 2652.309849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.097 4.097 4 H 0.080 0.920 5 C -0.097 4.097 6 C 0.063 3.937 7 H 0.014 0.986 8 N -0.823 5.823 9 C 0.179 3.821 10 N -0.577 5.577 11 C -0.230 4.230 12 H 0.061 0.939 13 C -0.004 4.004 14 N -0.910 5.910 15 Si 0.900 3.100 16 H -0.285 1.285 17 H -0.293 1.293 18 H -0.285 1.285 19 C 0.157 3.843 20 H 0.058 0.942 21 H 0.051 0.949 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.336 0.664 28 H 0.318 0.682 29 H 0.018 0.982 30 H 0.086 0.914 31 H 0.251 0.749 32 H 0.010 0.990 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 -7.630 -6.349 9.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.117 4.117 4 H 0.098 0.902 5 C -0.135 4.135 6 C -0.049 4.049 7 H 0.031 0.969 8 N -0.352 5.352 9 C 0.052 3.948 10 N -0.298 5.298 11 C -0.360 4.360 12 H 0.078 0.922 13 C -0.201 4.201 14 N -0.556 5.556 15 Si 0.731 3.269 16 H -0.211 1.211 17 H -0.219 1.219 18 H -0.212 1.212 19 C 0.030 3.970 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.129 0.871 29 H 0.036 0.964 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.027 0.973 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.411 -7.626 -5.849 9.619 hybrid contribution 0.696 0.984 -0.424 1.278 sum 0.285 -6.642 -6.272 9.140 Atomic orbital electron populations 1.21777 0.96371 1.00384 1.02165 1.21567 0.95615 0.97778 1.00623 1.21570 0.94703 0.93899 1.01542 0.90176 1.21463 0.96805 0.95684 0.99533 1.22124 0.93130 0.94429 0.95257 0.96869 1.58535 1.66717 1.05485 1.04463 1.20757 0.84658 1.00233 0.89122 1.43720 1.03195 1.00813 1.82070 1.19096 0.94418 0.91558 1.30978 0.92150 1.24955 0.98080 0.99157 0.97898 1.70020 1.20802 1.28450 1.36371 0.86395 0.78800 0.84182 0.77555 1.21118 1.21932 1.21206 1.20914 0.96517 0.86886 0.92656 0.92280 0.93018 0.93814 0.93220 0.92775 0.94233 0.92790 0.85148 0.87115 0.96396 0.89633 0.93915 0.97258 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.68 37.16 0.36 -1.73 16 2 C -0.12 -1.77 5.40 -26.73 -0.14 -1.91 16 3 C -0.10 -1.77 2.19 -90.50 -0.20 -1.97 16 4 H 0.08 1.60 7.53 -51.93 -0.39 1.21 16 5 C -0.10 -1.72 4.83 -26.69 -0.13 -1.85 16 6 C 0.06 1.24 3.60 -67.59 -0.24 1.00 16 7 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 8 N -0.82 -15.18 8.32 -4.56 -0.04 -15.21 16 9 C 0.18 4.37 4.91 -3.71 -0.02 4.35 16 10 N -0.58 -14.84 2.91 -172.32 -0.50 -15.35 16 11 C -0.23 -6.51 9.58 -15.05 -0.14 -6.65 16 12 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 13 C 0.00 -0.11 4.92 -17.43 -0.09 -0.19 16 14 N -0.91 -26.95 11.20 55.49 0.62 -26.33 16 15 Si 0.90 22.33 29.59 -169.99 -5.03 17.30 16 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 C 0.16 3.45 5.41 -3.71 -0.02 3.43 16 20 H 0.06 0.88 6.70 -51.93 -0.35 0.53 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.34 6.18 9.04 -39.29 -0.36 5.83 16 28 H 0.32 4.94 8.99 -39.29 -0.35 4.58 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.05 1.12 6.66 -51.93 -0.35 0.77 16 LS Contribution 258.30 15.07 3.89 3.89 Total: -1.00 -29.70 258.30 -7.14 -36.84 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.46 Total: 4.38 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -0.62 Total: -5.53 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.08 Total: -56.88 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.70 -7.14 -36.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005701.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.201 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds