Wall clock time and date at job start Mon Mar 30 2020 02:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47304 * 2 1 4 4 H 1.09003 * 109.52608 * 305.07729 * 3 2 1 5 5 C 1.53043 * 109.50061 * 184.99702 * 3 2 1 6 6 C 1.53035 * 109.52722 * 178.67493 * 5 3 2 7 7 H 1.09010 * 109.49509 * 181.35804 * 6 5 3 8 8 N 1.46903 * 109.49945 * 301.42047 * 6 5 3 9 9 C 1.53191 * 109.31572 * 61.37570 * 6 5 3 10 10 N 1.46928 * 108.77050 * 305.36588 * 9 6 5 11 11 C 1.36941 * 120.62702 * 233.62997 * 10 9 6 12 12 H 1.07994 * 120.00102 * 151.82006 * 11 10 9 13 13 C 1.38820 * 119.99871 * 331.81795 * 11 10 9 14 14 N 1.31615 * 119.99827 * 343.08311 * 13 11 10 15 15 Si 1.86798 * 119.99672 * 163.08106 * 13 11 10 16 16 H 1.48499 * 109.47331 * 60.00031 * 15 13 11 17 17 H 1.48500 * 109.46947 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47173 * 299.99718 * 15 13 11 19 19 C 1.46922 * 118.74606 * 53.60540 * 10 9 6 20 20 H 1.09003 * 109.47129 * 300.00222 * 1 2 3 21 21 H 1.09003 * 109.46908 * 59.99967 * 1 2 3 22 22 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47324 * 239.99276 * 2 1 3 24 24 H 1.09003 * 109.46908 * 120.00033 * 2 1 3 25 25 H 1.09005 * 109.45923 * 58.65896 * 5 3 2 26 26 H 1.09002 * 109.45594 * 298.69104 * 5 3 2 27 27 H 1.00904 * 110.99968 * 180.02562 * 8 6 5 28 28 H 1.00896 * 110.99783 * 303.95623 * 8 6 5 29 29 H 1.08997 * 109.58676 * 65.14654 * 9 6 5 30 30 H 1.08998 * 109.58908 * 185.57652 * 9 6 5 31 31 H 0.97000 * 119.99811 * 180.02562 * 14 13 11 32 32 H 1.09005 * 109.58544 * 66.17685 * 19 10 9 33 33 H 1.08995 * 109.58863 * 186.46190 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6049 1.9828 -0.8408 5 6 3.5653 1.4450 -0.1257 6 6 4.0734 2.8882 -0.1590 7 1 5.1575 2.8896 -0.2727 8 7 3.4608 3.5977 -1.2900 9 6 3.6950 3.5889 1.1497 10 7 2.2449 3.4642 1.3507 11 6 1.4731 4.5737 1.5706 12 1 0.4344 4.5762 1.2750 13 6 2.0258 5.6953 2.1737 14 7 3.1632 5.5970 2.8287 15 14 1.1554 7.3438 2.0553 16 1 -0.1938 7.2362 2.6663 17 1 1.9454 8.3736 2.7769 18 1 1.0230 7.7324 0.6282 19 6 1.6385 2.1265 1.3106 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 3.8547 0.9368 -1.0455 26 1 4.0008 0.9262 0.7283 27 1 3.7812 4.5536 -1.3336 28 1 3.6401 3.1166 -2.1586 29 1 4.2208 3.1192 1.9809 30 1 3.9666 4.6429 1.0916 31 1 3.5492 6.3806 3.2504 32 1 1.9967 1.5375 2.1550 33 1 0.5534 2.2155 1.3613 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108005701.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:18 Heat of formation + Delta-G solvation = -13.688616 kcal Electronic energy + Delta-G solvation = -13551.464723 eV Core-core repulsion = 11418.095834 eV Total energy + Delta-G solvation = -2133.368890 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.76102 -35.79289 -35.16658 -32.74128 -30.46548 -29.01884 -27.17787 -24.63099 -23.51258 -21.48041 -20.11280 -18.60027 -16.84514 -16.45480 -16.06315 -15.67147 -15.45803 -14.68064 -14.45242 -14.11172 -13.80564 -13.61755 -13.01435 -12.75527 -12.68917 -12.39680 -12.25147 -12.11426 -11.99671 -11.62681 -11.33183 -11.04812 -10.98169 -10.47128 -9.24175 -8.54213 -7.79719 -5.21716 1.47338 1.49917 1.56748 2.56092 3.33204 3.69639 3.90963 4.03168 4.15158 4.21948 4.46102 4.61112 4.67426 4.71126 4.80651 4.92636 5.06514 5.09573 5.22184 5.25349 5.28261 5.38817 5.49625 5.56815 5.62960 5.72419 5.84615 6.41591 6.52540 6.86913 7.23187 7.96598 8.48604 9.26052 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039229 B = 0.012083 C = 0.010554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.578820 B = 2316.844778 C = 2652.309849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.085 4.085 4 H 0.067 0.933 5 C -0.094 4.094 6 C 0.072 3.928 7 H 0.029 0.971 8 N -0.830 5.830 9 C 0.184 3.816 10 N -0.593 5.593 11 C -0.242 4.242 12 H 0.056 0.944 13 C -0.054 4.054 14 N -0.940 5.940 15 Si 0.964 3.036 16 H -0.279 1.279 17 H -0.295 1.295 18 H -0.280 1.280 19 C 0.153 3.847 20 H 0.042 0.958 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.335 0.665 28 H 0.339 0.661 29 H -0.008 1.008 30 H 0.053 0.947 31 H 0.247 0.753 32 H 0.002 0.998 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.136 -8.767 -7.872 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.105 4.105 4 H 0.085 0.915 5 C -0.132 4.132 6 C -0.041 4.041 7 H 0.047 0.953 8 N -0.361 5.361 9 C 0.058 3.942 10 N -0.315 5.315 11 C -0.373 4.373 12 H 0.074 0.926 13 C -0.248 4.248 14 N -0.587 5.587 15 Si 0.793 3.207 16 H -0.205 1.205 17 H -0.222 1.222 18 H -0.206 1.206 19 C 0.027 3.973 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.766 -8.797 -7.400 11.521 hybrid contribution 0.788 1.301 0.074 1.523 sum 0.021 -7.496 -7.325 10.481 Atomic orbital electron populations 1.21763 0.95739 1.01735 1.01365 1.21515 0.96158 0.95312 1.01939 1.21390 0.95250 0.95553 0.98273 0.91478 1.21464 0.96105 0.94418 1.01203 1.21880 0.94136 0.95094 0.92961 0.95305 1.58430 1.66824 1.05644 1.05188 1.20573 0.83952 0.98604 0.91095 1.43956 1.03572 1.01631 1.82347 1.19350 0.94619 0.92781 1.30502 0.92621 1.25659 0.98981 1.02193 0.97946 1.70177 1.22238 1.28880 1.37422 0.85390 0.77791 0.80043 0.77509 1.20475 1.22178 1.20640 1.21067 0.95991 0.85532 0.94678 0.93901 0.93035 0.91408 0.90829 0.92432 0.90899 0.92792 0.85307 0.84757 0.99028 0.92904 0.94416 0.98058 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.68 71.98 0.70 -3.09 16 2 C -0.11 -2.99 5.40 30.59 0.17 -2.83 16 3 C -0.08 -2.93 2.19 -10.71 -0.02 -2.95 16 4 H 0.07 2.53 7.53 -2.39 -0.02 2.52 16 5 C -0.09 -3.08 4.83 30.62 0.15 -2.93 16 6 C 0.07 2.72 3.60 44.99 0.16 2.89 16 7 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 8 N -0.83 -29.22 8.32 -168.35 -1.40 -30.62 16 9 C 0.18 9.16 4.91 86.36 0.42 9.58 16 10 N -0.59 -30.93 2.91 -699.10 -2.04 -32.96 16 11 C -0.24 -13.86 9.58 84.03 0.81 -13.05 16 12 H 0.06 3.18 7.88 -2.91 -0.02 3.15 16 13 C -0.05 -3.08 4.92 84.86 0.42 -2.67 16 14 N -0.94 -57.05 11.20 21.65 0.24 -56.80 16 15 Si 0.96 46.49 29.59 68.60 2.03 48.52 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 C 0.15 6.70 5.41 86.36 0.47 7.17 16 20 H 0.04 1.21 6.70 -2.39 -0.02 1.20 16 21 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.33 12.01 9.04 -89.69 -0.81 11.20 16 28 H 0.34 9.55 8.99 -89.70 -0.81 8.74 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.05 2.95 6.06 -2.39 -0.01 2.94 16 31 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 33 H 0.04 1.97 6.66 -2.39 -0.02 1.96 16 Total: -1.00 -64.07 258.30 1.57 -62.50 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.53 Total: 17.25 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 3.26 Total: -7.88 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -3.19 Total: -120.39 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -64.07 1.57 -62.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005701.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.812 kcal (2) G-P(sol) polarization free energy of solvation -64.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds