Wall clock time and date at job start Mon Mar 30 2020 02:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99858 * 2 1 4 4 H 1.09003 * 109.52462 * 34.92078 * 3 2 1 5 5 C 1.53043 * 109.49970 * 155.00129 * 3 2 1 6 6 C 1.53036 * 109.54325 * 181.31728 * 5 3 2 7 7 H 1.09005 * 109.49477 * 58.58557 * 6 5 3 8 8 C 1.52997 * 109.50052 * 178.68014 * 6 5 3 9 9 C 1.53191 * 109.31166 * 298.63432 * 6 5 3 10 10 N 1.46926 * 108.89452 * 54.56289 * 9 6 5 11 11 C 1.36934 * 120.63630 * 126.46229 * 10 9 6 12 12 H 1.08000 * 119.99464 * 331.92669 * 11 10 9 13 13 C 1.38810 * 120.00385 * 151.92945 * 11 10 9 14 14 N 1.31619 * 119.99689 * 343.17004 * 13 11 10 15 15 Si 1.86795 * 119.99988 * 163.17171 * 13 11 10 16 16 H 1.48503 * 109.47611 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47271 * 120.00121 * 15 13 11 18 18 H 1.48496 * 109.47355 * 239.99904 * 15 13 11 19 19 C 1.46973 * 118.71425 * 306.64410 * 10 9 6 20 20 H 1.08999 * 109.46707 * 299.99795 * 1 2 3 21 21 H 1.09002 * 109.46856 * 60.00025 * 1 2 3 22 22 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 23 23 H 1.00902 * 110.99800 * 236.04374 * 2 1 3 24 24 H 1.09004 * 109.45856 * 61.29045 * 5 3 2 25 25 H 1.09008 * 109.45970 * 301.33602 * 5 3 2 26 26 H 1.09001 * 109.47135 * 179.83499 * 8 6 5 27 27 H 1.09000 * 109.47303 * 299.83931 * 8 6 5 28 28 H 1.09003 * 109.47094 * 59.84089 * 8 6 5 29 29 H 1.09000 * 109.58954 * 174.41929 * 9 6 5 30 30 H 1.08996 * 109.58649 * 294.70243 * 9 6 5 31 31 H 0.97000 * 119.99637 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.46458 * 293.56938 * 19 10 9 33 33 H 1.08992 * 109.71060 * 173.28601 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3395 2.0134 0.5881 5 6 3.3992 1.3798 0.6097 6 6 3.9354 2.8128 0.6403 7 1 3.2612 3.4412 1.2223 8 6 5.3252 2.8245 1.2799 9 6 4.0269 3.3501 -0.7914 10 7 2.7143 3.2109 -1.4367 11 6 2.1062 4.2895 -2.0213 12 1 2.3086 5.2861 -1.6578 13 6 1.2297 4.1020 -3.0812 14 7 1.2270 2.9621 -3.7392 15 14 0.0540 5.4675 -3.5737 16 1 0.2541 6.6385 -2.6825 17 1 0.3177 5.8645 -4.9801 18 1 -1.3449 4.9851 -3.4495 19 6 2.0649 1.8924 -1.4389 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8306 -0.5262 -0.7814 24 1 4.0605 0.7573 0.0070 25 1 3.3563 0.9864 1.6254 26 1 5.7080 3.8449 1.2988 27 1 5.2596 2.4420 2.2985 28 1 5.9983 2.1947 0.6980 29 1 4.3135 4.4016 -0.7695 30 1 4.7704 2.7803 -1.3487 31 1 0.6147 2.8312 -4.4801 32 1 2.6466 1.2020 -2.0498 33 1 1.0573 1.9796 -1.8450 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108012206.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:08 Heat of formation + Delta-G solvation = 8.613940 kcal Electronic energy + Delta-G solvation = -13462.595641 eV Core-core repulsion = 11330.193863 eV Total energy + Delta-G solvation = -2132.401778 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.16245 -34.76996 -33.58382 -30.62652 -29.30697 -25.79197 -25.25929 -24.22214 -21.58492 -20.43995 -19.06007 -16.70186 -15.38319 -14.51575 -14.31889 -13.96358 -13.64774 -13.57668 -12.83793 -12.57628 -12.08968 -11.90289 -11.71959 -11.35605 -11.06577 -10.98091 -10.70155 -10.36506 -10.20972 -10.15016 -9.86698 -9.64483 -9.52212 -8.49943 -7.88258 -6.64015 -5.79606 -3.22714 3.35075 3.43133 3.45611 4.47388 4.76449 5.34059 5.50213 5.53552 5.64954 5.75663 5.77506 5.93418 6.02071 6.19164 6.23894 6.30074 6.33539 6.39137 6.47431 6.56576 6.71298 6.85225 6.92998 7.07420 7.23908 7.50790 7.70163 7.77743 7.91901 8.43723 9.19804 9.83809 10.40999 11.27966 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029972 B = 0.013656 C = 0.010219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.971611 B = 2049.942393 C = 2739.253358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.692 5.692 3 C 0.056 3.944 4 H 0.067 0.933 5 C -0.089 4.089 6 C -0.111 4.111 7 H 0.064 0.936 8 C -0.140 4.140 9 C 0.151 3.849 10 N -0.591 5.591 11 C -0.250 4.250 12 H 0.066 0.934 13 C 0.000 4.000 14 N -0.904 5.904 15 Si 0.901 3.099 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.151 3.849 20 H 0.057 0.943 21 H 0.027 0.973 22 H 0.057 0.943 23 H 0.336 0.664 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.017 0.983 31 H 0.252 0.748 32 H 0.016 0.984 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 -3.208 7.162 8.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.321 5.321 3 C -0.055 4.055 4 H 0.086 0.914 5 C -0.127 4.127 6 C -0.132 4.132 7 H 0.083 0.917 8 C -0.198 4.198 9 C 0.025 3.975 10 N -0.313 5.313 11 C -0.380 4.380 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.549 5.549 15 Si 0.731 3.269 16 H -0.202 1.202 17 H -0.217 1.217 18 H -0.216 1.216 19 C 0.024 3.976 20 H 0.076 0.924 21 H 0.046 0.954 22 H 0.076 0.924 23 H 0.153 0.847 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.115 -3.305 7.696 8.639 hybrid contribution -0.888 0.899 -1.318 1.825 sum 1.227 -2.406 6.379 6.927 Atomic orbital electron populations 1.22135 0.88763 1.00625 1.00521 1.60691 1.07221 1.15012 1.49158 1.22368 0.95462 0.87856 0.99786 0.91435 1.21386 0.95907 0.95772 0.99618 1.21648 0.95711 0.96882 0.98923 0.91750 1.21744 0.97246 1.01031 0.99744 1.20967 0.88178 0.98179 0.90177 1.43982 1.15950 1.06729 1.64677 1.19258 1.21791 0.87345 1.09626 0.91587 1.25049 1.01776 0.97199 0.95762 1.70045 1.38552 1.24940 1.21329 0.86235 0.80997 0.81626 0.78036 1.20185 1.21677 1.21615 1.21405 0.99521 0.86086 0.90604 0.92426 0.95439 0.92447 0.84704 0.92957 0.93129 0.93145 0.93461 0.93105 0.92995 0.96528 0.93771 0.96642 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.50 60.07 0.63 1.11 16 2 N -0.69 -12.19 6.61 -113.88 -0.75 -12.94 16 3 C 0.06 1.12 2.62 -67.60 -0.18 0.95 16 4 H 0.07 1.44 7.80 -51.93 -0.41 1.03 16 5 C -0.09 -1.60 4.77 -26.69 -0.13 -1.73 16 6 C -0.11 -2.00 2.87 -90.50 -0.26 -2.26 16 7 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 8 C -0.14 -2.03 9.20 37.16 0.34 -1.69 16 9 C 0.15 3.26 5.79 -3.71 -0.02 3.24 16 10 N -0.59 -15.13 3.00 -172.29 -0.52 -15.64 16 11 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 12 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 13 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 14 N -0.90 -26.49 11.20 55.49 0.62 -25.87 16 15 Si 0.90 21.90 29.59 -169.99 -5.03 16.88 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 C 0.15 3.65 4.55 -3.69 -0.02 3.63 16 20 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 21 H 0.03 0.49 7.57 -51.93 -0.39 0.10 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.34 5.77 8.50 -39.29 -0.33 5.44 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.02 0.40 8.04 -51.93 -0.42 -0.02 16 33 H 0.08 2.28 5.55 -51.93 -0.29 1.99 16 LS Contribution 261.30 15.07 3.94 3.94 Total: -1.00 -29.18 261.30 -7.20 -36.38 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.60 Total: 1.21 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 0.14 Total: -3.95 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.65 Total: -54.46 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.18 -7.20 -36.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012206.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.996 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds