Wall clock time and date at job start Mon Mar 30 2020 02:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99858 * 2 1 4 4 H 1.09003 * 109.52462 * 34.92078 * 3 2 1 5 5 C 1.53043 * 109.49970 * 155.00129 * 3 2 1 6 6 C 1.53036 * 109.54325 * 181.31728 * 5 3 2 7 7 H 1.09005 * 109.49477 * 58.58557 * 6 5 3 8 8 C 1.52997 * 109.50052 * 178.68014 * 6 5 3 9 9 C 1.53191 * 109.31166 * 298.63432 * 6 5 3 10 10 N 1.46926 * 108.89452 * 54.56289 * 9 6 5 11 11 C 1.36934 * 120.63630 * 126.46229 * 10 9 6 12 12 H 1.08000 * 119.99464 * 331.92669 * 11 10 9 13 13 C 1.38810 * 120.00385 * 151.92945 * 11 10 9 14 14 N 1.31619 * 119.99689 * 343.17004 * 13 11 10 15 15 Si 1.86795 * 119.99988 * 163.17171 * 13 11 10 16 16 H 1.48503 * 109.47611 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47271 * 120.00121 * 15 13 11 18 18 H 1.48496 * 109.47355 * 239.99904 * 15 13 11 19 19 C 1.46973 * 118.71425 * 306.64410 * 10 9 6 20 20 H 1.08999 * 109.46707 * 299.99795 * 1 2 3 21 21 H 1.09002 * 109.46856 * 60.00025 * 1 2 3 22 22 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 23 23 H 1.00902 * 110.99800 * 236.04374 * 2 1 3 24 24 H 1.09004 * 109.45856 * 61.29045 * 5 3 2 25 25 H 1.09008 * 109.45970 * 301.33602 * 5 3 2 26 26 H 1.09001 * 109.47135 * 179.83499 * 8 6 5 27 27 H 1.09000 * 109.47303 * 299.83931 * 8 6 5 28 28 H 1.09003 * 109.47094 * 59.84089 * 8 6 5 29 29 H 1.09000 * 109.58954 * 174.41929 * 9 6 5 30 30 H 1.08996 * 109.58649 * 294.70243 * 9 6 5 31 31 H 0.97000 * 119.99637 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.46458 * 293.56938 * 19 10 9 33 33 H 1.08992 * 109.71060 * 173.28601 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3395 2.0134 0.5881 5 6 3.3992 1.3798 0.6097 6 6 3.9354 2.8128 0.6403 7 1 3.2612 3.4412 1.2223 8 6 5.3252 2.8245 1.2799 9 6 4.0269 3.3501 -0.7914 10 7 2.7143 3.2109 -1.4367 11 6 2.1062 4.2895 -2.0213 12 1 2.3086 5.2861 -1.6578 13 6 1.2297 4.1020 -3.0812 14 7 1.2270 2.9621 -3.7392 15 14 0.0540 5.4675 -3.5737 16 1 0.2541 6.6385 -2.6825 17 1 0.3177 5.8645 -4.9801 18 1 -1.3449 4.9851 -3.4495 19 6 2.0649 1.8924 -1.4389 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8306 -0.5262 -0.7814 24 1 4.0605 0.7573 0.0070 25 1 3.3563 0.9864 1.6254 26 1 5.7080 3.8449 1.2988 27 1 5.2596 2.4420 2.2985 28 1 5.9983 2.1947 0.6980 29 1 4.3135 4.4016 -0.7695 30 1 4.7704 2.7803 -1.3487 31 1 0.6147 2.8312 -4.4801 32 1 2.6466 1.2020 -2.0498 33 1 1.0573 1.9796 -1.8450 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108012206.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:07 Heat of formation + Delta-G solvation = -11.009214 kcal Electronic energy + Delta-G solvation = -13463.446565 eV Core-core repulsion = 11330.193863 eV Total energy + Delta-G solvation = -2133.252702 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.83341 -36.34772 -35.39139 -32.57943 -30.87408 -27.38051 -27.19395 -25.64341 -23.45249 -22.02443 -20.66845 -18.74993 -17.15303 -16.28675 -15.96798 -15.47174 -15.42853 -15.21710 -14.46529 -14.27409 -13.68106 -13.38709 -13.12406 -12.92430 -12.75391 -12.69446 -12.45971 -12.29056 -12.01524 -11.85682 -11.46384 -11.30318 -11.17753 -10.60533 -9.45744 -8.67599 -7.91089 -5.38502 1.41352 1.43189 1.54179 2.46287 3.19501 3.29428 3.76765 4.03075 4.19824 4.25240 4.31121 4.53929 4.57157 4.70546 4.84027 4.85128 4.88719 4.99711 5.04669 5.09309 5.16344 5.27548 5.42941 5.44234 5.52708 5.60682 5.67670 6.08754 6.34686 6.45218 7.09416 7.80970 8.33070 9.13396 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029972 B = 0.013656 C = 0.010219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.971611 B = 2049.942393 C = 2739.253358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.682 5.682 3 C 0.069 3.931 4 H 0.055 0.945 5 C -0.082 4.082 6 C -0.102 4.102 7 H 0.057 0.943 8 C -0.132 4.132 9 C 0.147 3.853 10 N -0.611 5.611 11 C -0.264 4.264 12 H 0.067 0.933 13 C -0.052 4.052 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.265 1.265 17 H -0.290 1.290 18 H -0.290 1.290 19 C 0.163 3.837 20 H 0.064 0.936 21 H 0.002 0.998 22 H 0.087 0.913 23 H 0.339 0.661 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.012 0.988 31 H 0.249 0.751 32 H -0.008 1.008 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.549 -3.253 8.739 9.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.311 5.311 3 C -0.042 4.042 4 H 0.074 0.926 5 C -0.120 4.120 6 C -0.123 4.123 7 H 0.076 0.924 8 C -0.190 4.190 9 C 0.021 3.979 10 N -0.335 5.335 11 C -0.394 4.394 12 H 0.084 0.916 13 C -0.247 4.247 14 N -0.581 5.581 15 Si 0.794 3.206 16 H -0.189 1.189 17 H -0.217 1.217 18 H -0.217 1.217 19 C 0.036 3.964 20 H 0.083 0.917 21 H 0.021 0.979 22 H 0.105 0.895 23 H 0.156 0.844 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.010 0.990 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.502 -3.353 9.301 10.198 hybrid contribution -0.977 0.895 -1.823 2.254 sum 1.525 -2.458 7.477 8.017 Atomic orbital electron populations 1.22207 0.87798 1.02319 0.99619 1.60772 1.08095 1.13255 1.49014 1.22130 0.96888 0.88679 0.96515 0.92639 1.21352 0.94201 0.95914 1.00560 1.21533 0.98027 0.96387 0.96334 0.92414 1.21677 0.94634 1.02049 1.00600 1.21145 0.86212 0.98405 0.92089 1.44291 1.17592 1.06575 1.64996 1.19579 1.22071 0.88156 1.09620 0.91574 1.25817 1.03378 0.99492 0.95999 1.70196 1.39269 1.26841 1.21834 0.85219 0.78538 0.79265 0.77552 1.18946 1.21700 1.21677 1.21214 0.96865 0.85422 0.92906 0.91741 0.97930 0.89469 0.84364 0.92944 0.90861 0.92208 0.91261 0.92588 0.93088 0.97037 0.94173 0.99009 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 10.50 127.69 1.34 2.29 16 2 N -0.68 -23.23 6.61 -514.20 -3.40 -26.63 16 3 C 0.07 2.73 2.62 44.99 0.12 2.85 16 4 H 0.06 2.33 7.80 -2.39 -0.02 2.31 16 5 C -0.08 -2.80 4.77 30.62 0.15 -2.65 16 6 C -0.10 -3.49 2.87 -10.72 -0.03 -3.52 16 7 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 8 C -0.13 -3.40 9.20 71.98 0.66 -2.74 16 9 C 0.15 6.27 5.79 86.36 0.50 6.77 16 10 N -0.61 -31.74 3.00 -699.01 -2.10 -33.84 16 11 C -0.26 -14.93 9.58 84.03 0.81 -14.13 16 12 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 13 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 14 N -0.94 -56.33 11.20 21.65 0.24 -56.08 16 15 Si 0.97 45.60 29.59 68.60 2.03 47.63 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 19 C 0.16 8.07 4.55 86.35 0.39 8.47 16 20 H 0.06 1.92 8.06 -2.39 -0.02 1.90 16 21 H 0.00 0.07 7.57 -2.39 -0.02 0.06 16 22 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 23 H 0.34 11.38 8.50 -89.69 -0.76 10.62 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 32 H -0.01 -0.43 8.04 -2.39 -0.02 -0.45 16 33 H 0.05 2.76 5.55 -2.39 -0.01 2.75 16 Total: -1.00 -62.90 261.30 1.43 -61.47 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.30 Total: 12.65 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 4.35 Total: -5.19 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -5.25 Total: -116.55 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -62.90 1.43 -61.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012206.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.456 kcal (2) G-P(sol) polarization free energy of solvation -62.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds