Wall clock time and date at job start Mon Mar 30 2020 02:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99888 * 2 1 4 4 H 1.09001 * 109.49788 * 35.06761 * 3 2 1 5 5 C 1.53046 * 109.52103 * 155.14619 * 3 2 1 6 6 C 1.53045 * 109.53654 * 181.33433 * 5 3 2 7 7 H 1.09001 * 109.49746 * 178.64878 * 6 5 3 8 8 C 1.53005 * 109.49944 * 58.58311 * 6 5 3 9 9 C 1.53185 * 109.31091 * 298.63489 * 6 5 3 10 10 N 1.46923 * 108.78168 * 54.63614 * 9 6 5 11 11 C 1.36938 * 120.63698 * 126.38907 * 10 9 6 12 12 H 1.07997 * 120.00251 * 207.68916 * 11 10 9 13 13 C 1.38810 * 119.99502 * 27.68819 * 11 10 9 14 14 N 1.31613 * 120.00470 * 17.35474 * 13 11 10 15 15 Si 1.86802 * 119.99489 * 197.36146 * 13 11 10 16 16 H 1.48494 * 109.47648 * 89.99858 * 15 13 11 17 17 H 1.48507 * 109.46657 * 209.99707 * 15 13 11 18 18 H 1.48497 * 109.47094 * 329.99277 * 15 13 11 19 19 C 1.46935 * 118.73527 * 306.39226 * 10 9 6 20 20 H 1.08999 * 109.46767 * 59.99911 * 1 2 3 21 21 H 1.09003 * 109.46994 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47426 * 300.00121 * 1 2 3 23 23 H 1.00901 * 111.00620 * 236.04394 * 2 1 3 24 24 H 1.09005 * 109.46169 * 301.34849 * 5 3 2 25 25 H 1.08998 * 109.46446 * 61.32678 * 5 3 2 26 26 H 1.09008 * 109.46759 * 60.00010 * 8 6 5 27 27 H 1.08997 * 109.47090 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47145 * 300.00245 * 8 6 5 29 29 H 1.09003 * 109.58952 * 174.42329 * 9 6 5 30 30 H 1.09001 * 109.59059 * 294.84281 * 9 6 5 31 31 H 0.97000 * 120.00650 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.58540 * 293.81760 * 19 10 9 33 33 H 1.08995 * 109.58391 * 173.39126 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3406 2.0125 0.5903 5 6 3.4006 1.3798 0.6063 6 6 3.9362 2.8132 0.6370 7 1 4.9272 2.8216 1.0908 8 6 2.9914 3.6940 1.4571 9 6 4.0239 3.3520 -0.7943 10 7 2.7083 3.2130 -1.4335 11 6 2.0968 4.2923 -2.0134 12 1 1.0194 4.3338 -2.0753 13 6 2.8618 5.3331 -2.5217 14 7 4.1429 5.1517 -2.7626 15 14 2.0728 6.9915 -2.8635 16 1 2.1673 7.8441 -1.6514 17 1 2.7792 7.6528 -3.9901 18 1 0.6449 6.7961 -3.2212 19 6 2.0612 1.8939 -1.4386 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8307 -0.5261 -0.7813 24 1 3.3604 0.9855 1.6217 25 1 4.0609 0.7586 0.0013 26 1 2.9271 3.3085 2.4748 27 1 3.3730 4.7147 1.4783 28 1 2.0009 3.6861 1.0023 29 1 4.3100 4.4035 -0.7721 30 1 4.7645 2.7815 -1.3548 31 1 4.6775 5.8791 -3.1174 32 1 2.6417 1.2045 -2.0516 33 1 1.0523 1.9834 -1.8413 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108012209.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:10 Heat of formation + Delta-G solvation = -5.407531 kcal Electronic energy + Delta-G solvation = -13592.179133 eV Core-core repulsion = 11459.169338 eV Total energy + Delta-G solvation = -2133.009795 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.02909 -36.45605 -34.91119 -32.73854 -30.45199 -27.73850 -27.16273 -25.59554 -23.46814 -22.66124 -19.99266 -18.54356 -17.02589 -16.64266 -15.95985 -15.51253 -15.07363 -14.79836 -14.76952 -14.27809 -14.09879 -13.47768 -13.00861 -12.94161 -12.79914 -12.51792 -12.34983 -12.24202 -11.95612 -11.80792 -11.51717 -11.23759 -11.02106 -10.55323 -9.44680 -8.61838 -7.87257 -5.33902 1.44294 1.46025 1.54278 2.48717 3.25396 3.29997 3.78647 3.99749 4.18161 4.29034 4.39132 4.50056 4.57320 4.65040 4.72162 4.91981 4.98086 5.04871 5.08010 5.10657 5.20407 5.27123 5.40348 5.51916 5.57261 5.68479 5.75744 6.10606 6.38051 6.50944 7.13452 7.84277 8.36321 9.17286 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040942 B = 0.011860 C = 0.010582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.724042 B = 2360.277549 C = 2645.284727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.688 5.688 3 C 0.080 3.920 4 H 0.070 0.930 5 C -0.083 4.083 6 C -0.112 4.112 7 H 0.074 0.926 8 C -0.123 4.123 9 C 0.182 3.818 10 N -0.601 5.601 11 C -0.261 4.261 12 H 0.062 0.938 13 C -0.047 4.047 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.284 1.284 17 H -0.294 1.294 18 H -0.270 1.270 19 C 0.124 3.876 20 H 0.014 0.986 21 H 0.085 0.915 22 H 0.062 0.938 23 H 0.342 0.658 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.054 0.946 30 H -0.010 1.010 31 H 0.250 0.750 32 H 0.009 0.991 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 -7.027 6.919 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.317 5.317 3 C -0.031 4.031 4 H 0.088 0.912 5 C -0.121 4.121 6 C -0.133 4.133 7 H 0.092 0.908 8 C -0.180 4.180 9 C 0.056 3.944 10 N -0.324 5.324 11 C -0.391 4.391 12 H 0.079 0.921 13 C -0.243 4.243 14 N -0.579 5.579 15 Si 0.792 3.208 16 H -0.211 1.211 17 H -0.221 1.221 18 H -0.195 1.195 19 C -0.004 4.004 20 H 0.032 0.968 21 H 0.104 0.896 22 H 0.081 0.919 23 H 0.160 0.840 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.009 0.991 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.989 -7.007 7.529 11.031 hybrid contribution -0.254 1.332 -1.621 2.113 sum -4.243 -5.675 5.908 9.226 Atomic orbital electron populations 1.22241 0.87312 1.02497 1.00070 1.60670 1.08421 1.13094 1.49558 1.21971 0.96788 0.88780 0.95577 0.91155 1.21308 0.94908 0.95176 1.00735 1.21687 0.99056 0.95664 0.96875 0.90781 1.21594 0.99430 0.98277 0.98728 1.20665 0.85285 0.99141 0.89304 1.44150 1.19642 1.04386 1.64267 1.19435 0.90813 0.97353 1.31487 0.92073 1.25738 0.96656 1.02847 0.99059 1.70185 1.07555 1.31910 1.48275 0.85323 0.78097 0.80339 0.77055 1.21085 1.22110 1.19469 1.21700 0.95590 0.87205 0.95884 0.96756 0.89620 0.91938 0.84027 0.90826 0.93144 0.91710 0.94651 0.93694 0.92712 0.99143 0.94084 0.97281 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.50 127.69 1.34 2.03 16 2 N -0.69 -19.55 6.61 -514.21 -3.40 -22.95 16 3 C 0.08 2.77 2.27 44.99 0.10 2.87 16 4 H 0.07 2.58 6.00 -2.39 -0.01 2.56 16 5 C -0.08 -2.80 5.04 30.62 0.15 -2.65 16 6 C -0.11 -4.26 3.21 -10.71 -0.03 -4.30 16 7 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 8 C -0.12 -4.46 8.70 71.98 0.63 -3.83 16 9 C 0.18 8.91 4.70 86.36 0.41 9.32 16 10 N -0.60 -30.52 2.43 -699.10 -1.70 -32.22 16 11 C -0.26 -14.51 9.58 84.03 0.81 -13.70 16 12 H 0.06 3.36 7.89 -2.91 -0.02 3.33 16 13 C -0.05 -2.68 4.91 84.86 0.42 -2.26 16 14 N -0.93 -55.78 11.19 21.65 0.24 -55.54 16 15 Si 0.96 45.31 29.59 68.60 2.03 47.34 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 C 0.12 5.24 5.77 86.36 0.50 5.73 16 20 H 0.01 0.37 7.56 -2.39 -0.02 0.35 16 21 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.06 1.51 8.06 -2.39 -0.02 1.49 16 23 H 0.34 9.19 8.50 -89.69 -0.76 8.42 16 24 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 1.79 5.97 -2.39 -0.01 1.77 16 29 H 0.05 3.04 6.04 -2.39 -0.01 3.02 16 30 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.01 0.40 8.05 -2.39 -0.02 0.38 16 33 H 0.04 1.79 7.40 -2.39 -0.02 1.77 16 Total: -1.00 -61.45 256.58 1.80 -59.64 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.31 Total: 10.50 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 4.32 Total: -6.78 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -4.85 Total: -110.70 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -61.45 1.80 -59.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012209.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.236 kcal (2) G-P(sol) polarization free energy of solvation -61.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds