Wall clock time and date at job start Mon Mar 30 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 111.00061 * 2 1 4 4 H 1.09010 * 109.52129 * 325.08087 * 3 2 1 5 5 C 1.53040 * 109.49883 * 205.00203 * 3 2 1 6 6 C 1.53036 * 109.53955 * 178.68014 * 5 3 2 7 7 H 1.09005 * 109.49523 * 181.34699 * 6 5 3 8 8 C 1.52998 * 109.50134 * 301.41349 * 6 5 3 9 9 C 1.53191 * 109.31266 * 61.36671 * 6 5 3 10 10 N 1.46933 * 108.77323 * 305.36451 * 9 6 5 11 11 C 1.36937 * 120.63006 * 233.58559 * 10 9 6 12 12 H 1.08000 * 120.00244 * 151.84314 * 11 10 9 13 13 C 1.38815 * 119.99912 * 331.84401 * 11 10 9 14 14 N 1.31612 * 120.00090 * 343.08116 * 13 11 10 15 15 Si 1.86795 * 119.99858 * 163.08060 * 13 11 10 16 16 H 1.48499 * 109.47515 * 60.00174 * 15 13 11 17 17 H 1.48498 * 109.47316 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47577 * 299.99882 * 15 13 11 19 19 C 1.46925 * 118.73962 * 53.60777 * 10 9 6 20 20 H 1.09005 * 109.46637 * 300.00295 * 1 2 3 21 21 H 1.08997 * 109.47476 * 59.99855 * 1 2 3 22 22 H 1.08997 * 109.47099 * 180.02562 * 1 2 3 23 23 H 1.00897 * 111.00027 * 236.04574 * 2 1 3 24 24 H 1.08999 * 109.45672 * 298.70234 * 5 3 2 25 25 H 1.09000 * 109.45872 * 58.65749 * 5 3 2 26 26 H 1.09007 * 109.47114 * 59.99628 * 8 6 5 27 27 H 1.08992 * 109.47248 * 179.97438 * 8 6 5 28 28 H 1.09006 * 109.46711 * 300.00312 * 8 6 5 29 29 H 1.09002 * 109.58604 * 65.14708 * 9 6 5 30 30 H 1.08999 * 109.58928 * 185.43455 * 9 6 5 31 31 H 0.97004 * 120.00272 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.58678 * 186.60030 * 19 10 9 33 33 H 1.09003 * 109.58789 * 66.17779 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3395 2.0134 -0.5881 5 6 3.3992 1.3798 -0.6097 6 6 3.9354 2.8128 -0.6403 7 1 4.9253 2.8211 -1.0966 8 6 2.9892 3.6949 -1.4573 9 6 4.0270 3.3502 0.7913 10 7 2.7128 3.2112 1.4335 11 6 2.1035 4.2902 2.0164 12 1 1.0260 4.3359 2.0742 13 6 2.8708 5.3253 2.5329 14 7 4.1520 5.1398 2.7700 15 14 2.0848 6.9814 2.8915 16 1 0.9983 6.8082 3.8888 17 1 3.1103 7.9093 3.4323 18 1 1.5211 7.5438 1.6380 19 6 2.0650 1.8925 1.4389 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8306 -0.5261 -0.7813 24 1 4.0605 0.7573 -0.0070 25 1 3.3562 0.9863 -1.6253 26 1 1.9997 3.6871 -1.0001 27 1 3.3713 4.7154 -1.4784 28 1 2.9221 3.3104 -2.4751 29 1 4.7686 2.7786 1.3494 30 1 4.3161 4.4009 0.7694 31 1 4.6882 5.8629 3.1313 32 1 1.0572 1.9821 1.8442 33 1 2.6467 1.2021 2.0497 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108012213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:12 Heat of formation + Delta-G solvation = 14.901970 kcal Electronic energy + Delta-G solvation = -13583.150466 eV Core-core repulsion = 11451.021357 eV Total energy + Delta-G solvation = -2132.129109 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.37268 -34.91909 -33.06540 -30.81314 -28.92545 -26.07582 -25.31564 -24.32582 -21.71248 -20.78765 -18.19512 -16.60827 -15.45739 -14.63249 -14.37318 -14.34129 -13.49232 -13.15693 -12.97430 -12.64463 -12.45300 -12.08022 -11.40124 -11.32767 -10.97449 -10.80800 -10.57916 -10.43855 -10.16734 -10.09807 -9.77825 -9.51847 -9.26222 -8.44480 -8.04689 -6.58514 -5.73587 -3.15348 3.40843 3.46446 3.47580 4.45963 4.66109 5.38446 5.40801 5.57973 5.64886 5.70304 5.73055 5.82688 6.05816 6.09251 6.15133 6.24785 6.44285 6.48648 6.59665 6.74027 6.89000 6.94075 7.03684 7.12434 7.38695 7.50521 7.71731 7.73819 7.84372 8.51414 9.27433 9.91314 10.48575 11.35067 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041205 B = 0.011817 C = 0.010540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.361154 B = 2368.856106 C = 2655.963501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.692 5.692 3 C 0.066 3.934 4 H 0.045 0.955 5 C -0.104 4.104 6 C -0.116 4.116 7 H 0.056 0.944 8 C -0.132 4.132 9 C 0.175 3.825 10 N -0.589 5.589 11 C -0.250 4.250 12 H 0.063 0.937 13 C 0.003 3.997 14 N -0.903 5.903 15 Si 0.900 3.100 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.285 1.285 19 C 0.162 3.838 20 H 0.065 0.935 21 H 0.015 0.985 22 H 0.059 0.941 23 H 0.332 0.668 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.029 0.971 29 H 0.017 0.983 30 H 0.087 0.913 31 H 0.253 0.747 32 H 0.047 0.953 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.086 -6.222 -7.279 10.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.323 5.323 3 C -0.044 4.044 4 H 0.063 0.937 5 C -0.142 4.142 6 C -0.137 4.137 7 H 0.074 0.926 8 C -0.189 4.189 9 C 0.049 3.951 10 N -0.312 5.312 11 C -0.379 4.379 12 H 0.081 0.919 13 C -0.196 4.196 14 N -0.547 5.547 15 Si 0.730 3.270 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.211 1.211 19 C 0.035 3.965 20 H 0.084 0.916 21 H 0.034 0.966 22 H 0.078 0.922 23 H 0.149 0.851 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.931 -6.158 -6.493 9.417 hybrid contribution -0.541 1.119 -0.737 1.446 sum -3.473 -5.039 -7.230 9.472 Atomic orbital electron populations 1.22185 0.88545 1.00810 1.00362 1.60430 1.07159 1.15488 1.49197 1.22250 0.94949 0.87193 1.00023 0.93733 1.21589 0.96434 0.97703 0.98476 1.21777 0.97464 0.94042 1.00441 0.92553 1.21698 1.01140 0.98987 0.97096 1.20818 0.86559 1.01254 0.86425 1.43985 1.19345 1.03968 1.63881 1.19106 0.90659 0.96560 1.31600 0.91947 1.25008 0.96142 0.99702 0.98703 1.70023 1.06171 1.31527 1.46985 0.86404 0.78291 0.84214 0.78074 1.20932 1.21660 1.21117 1.20792 0.96589 0.87417 0.91749 0.91598 0.96609 0.92213 0.85126 0.92008 0.94049 0.91710 0.93396 0.95174 0.96482 0.89461 0.93651 0.93422 0.95770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.50 60.07 0.63 1.06 16 2 N -0.69 -10.83 6.67 -113.88 -0.76 -11.59 16 3 C 0.07 1.22 2.30 -67.59 -0.16 1.06 16 4 H 0.04 0.86 6.00 -51.92 -0.31 0.55 16 5 C -0.10 -1.83 4.71 -26.69 -0.13 -1.96 16 6 C -0.12 -2.27 3.21 -90.50 -0.29 -2.56 16 7 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 8 C -0.13 -2.48 8.70 37.16 0.32 -2.16 16 9 C 0.18 4.25 4.69 -3.71 -0.02 4.24 16 10 N -0.59 -15.00 2.43 -172.32 -0.42 -15.42 16 11 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 12 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 13 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 14 N -0.90 -26.47 11.19 55.49 0.62 -25.85 16 15 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.16 3.60 5.99 -3.71 -0.02 3.57 16 20 H 0.07 0.97 7.57 -51.93 -0.39 0.58 16 21 H 0.02 0.21 8.06 -51.93 -0.42 -0.21 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.33 4.52 8.42 -39.29 -0.33 4.19 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.04 0.63 8.10 -51.93 -0.42 0.21 16 26 H 0.06 1.34 5.97 -51.93 -0.31 1.03 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 2.35 6.07 -51.93 -0.31 2.04 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.05 1.06 7.41 -51.93 -0.39 0.68 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 256.58 15.07 3.87 3.87 Total: -1.00 -29.03 256.58 -7.00 -36.02 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.39 Total: -0.10 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 0.11 Total: -3.82 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.56 Total: -52.85 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.03 -7.00 -36.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.926 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds