Wall clock time and date at job start Mon Mar 30 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 111.00061 * 2 1 4 4 H 1.09010 * 109.52129 * 325.08087 * 3 2 1 5 5 C 1.53040 * 109.49883 * 205.00203 * 3 2 1 6 6 C 1.53036 * 109.53955 * 178.68014 * 5 3 2 7 7 H 1.09005 * 109.49523 * 181.34699 * 6 5 3 8 8 C 1.52998 * 109.50134 * 301.41349 * 6 5 3 9 9 C 1.53191 * 109.31266 * 61.36671 * 6 5 3 10 10 N 1.46933 * 108.77323 * 305.36451 * 9 6 5 11 11 C 1.36937 * 120.63006 * 233.58559 * 10 9 6 12 12 H 1.08000 * 120.00244 * 151.84314 * 11 10 9 13 13 C 1.38815 * 119.99912 * 331.84401 * 11 10 9 14 14 N 1.31612 * 120.00090 * 343.08116 * 13 11 10 15 15 Si 1.86795 * 119.99858 * 163.08060 * 13 11 10 16 16 H 1.48499 * 109.47515 * 60.00174 * 15 13 11 17 17 H 1.48498 * 109.47316 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47577 * 299.99882 * 15 13 11 19 19 C 1.46925 * 118.73962 * 53.60777 * 10 9 6 20 20 H 1.09005 * 109.46637 * 300.00295 * 1 2 3 21 21 H 1.08997 * 109.47476 * 59.99855 * 1 2 3 22 22 H 1.08997 * 109.47099 * 180.02562 * 1 2 3 23 23 H 1.00897 * 111.00027 * 236.04574 * 2 1 3 24 24 H 1.08999 * 109.45672 * 298.70234 * 5 3 2 25 25 H 1.09000 * 109.45872 * 58.65749 * 5 3 2 26 26 H 1.09007 * 109.47114 * 59.99628 * 8 6 5 27 27 H 1.08992 * 109.47248 * 179.97438 * 8 6 5 28 28 H 1.09006 * 109.46711 * 300.00312 * 8 6 5 29 29 H 1.09002 * 109.58604 * 65.14708 * 9 6 5 30 30 H 1.08999 * 109.58928 * 185.43455 * 9 6 5 31 31 H 0.97004 * 120.00272 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.58678 * 186.60030 * 19 10 9 33 33 H 1.09003 * 109.58789 * 66.17779 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3395 2.0134 -0.5881 5 6 3.3992 1.3798 -0.6097 6 6 3.9354 2.8128 -0.6403 7 1 4.9253 2.8211 -1.0966 8 6 2.9892 3.6949 -1.4573 9 6 4.0270 3.3502 0.7913 10 7 2.7128 3.2112 1.4335 11 6 2.1035 4.2902 2.0164 12 1 1.0260 4.3359 2.0742 13 6 2.8708 5.3253 2.5329 14 7 4.1520 5.1398 2.7700 15 14 2.0848 6.9814 2.8915 16 1 0.9983 6.8082 3.8888 17 1 3.1103 7.9093 3.4323 18 1 1.5211 7.5438 1.6380 19 6 2.0650 1.8925 1.4389 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8306 -0.5261 -0.7813 24 1 4.0605 0.7573 -0.0070 25 1 3.3562 0.9863 -1.6253 26 1 1.9997 3.6871 -1.0001 27 1 3.3713 4.7154 -1.4784 28 1 2.9221 3.3104 -2.4751 29 1 4.7686 2.7786 1.3494 30 1 4.3161 4.4009 0.7694 31 1 4.6882 5.8629 3.1313 32 1 1.0572 1.9821 1.8442 33 1 2.6467 1.2021 2.0497 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108012213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:12 Heat of formation + Delta-G solvation = -4.550725 kcal Electronic energy + Delta-G solvation = -13583.993998 eV Core-core repulsion = 11451.021357 eV Total energy + Delta-G solvation = -2132.972641 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.00238 -36.46658 -34.86039 -32.76881 -30.47475 -27.75699 -27.25823 -25.61196 -23.60819 -22.35922 -19.91573 -18.52945 -17.14160 -16.32327 -15.99438 -15.82490 -15.30116 -14.92050 -14.45101 -14.13439 -14.02281 -13.71589 -13.01781 -12.98599 -12.73763 -12.51877 -12.29946 -12.20288 -11.93330 -11.85838 -11.57028 -11.25090 -10.90800 -10.53245 -9.34966 -8.63729 -7.86361 -5.31668 1.45650 1.47825 1.54700 2.50394 3.24926 3.29740 3.84310 3.95178 4.12173 4.27356 4.41835 4.52516 4.59557 4.69352 4.70261 4.89282 4.97620 5.02507 5.08716 5.11749 5.22002 5.24233 5.40837 5.48406 5.58472 5.67683 5.75654 6.11490 6.41063 6.61795 7.16244 7.87556 8.39840 9.19862 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041205 B = 0.011817 C = 0.010540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.361154 B = 2368.856106 C = 2655.963501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.696 5.696 3 C 0.082 3.918 4 H 0.040 0.960 5 C -0.098 4.098 6 C -0.111 4.111 7 H 0.076 0.924 8 C -0.124 4.124 9 C 0.181 3.819 10 N -0.604 5.604 11 C -0.261 4.261 12 H 0.061 0.939 13 C -0.048 4.048 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.276 1.276 17 H -0.293 1.293 18 H -0.277 1.277 19 C 0.161 3.839 20 H 0.048 0.952 21 H 0.024 0.976 22 H 0.086 0.914 23 H 0.349 0.651 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.065 0.935 29 H -0.011 1.011 30 H 0.054 0.946 31 H 0.250 0.750 32 H 0.038 0.962 33 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.951 -7.014 -9.001 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.329 5.329 3 C -0.029 4.029 4 H 0.058 0.942 5 C -0.136 4.136 6 C -0.131 4.131 7 H 0.095 0.905 8 C -0.181 4.181 9 C 0.055 3.945 10 N -0.327 5.327 11 C -0.391 4.391 12 H 0.079 0.921 13 C -0.244 4.244 14 N -0.580 5.580 15 Si 0.793 3.207 16 H -0.202 1.202 17 H -0.219 1.219 18 H -0.204 1.204 19 C 0.034 3.966 20 H 0.067 0.933 21 H 0.043 0.957 22 H 0.104 0.896 23 H 0.168 0.832 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -3.815 -6.985 -8.238 11.454 hybrid contribution -0.288 1.294 -0.162 1.335 sum -4.103 -5.691 -8.400 10.944 Atomic orbital electron populations 1.22227 0.87214 1.02458 0.99956 1.60280 1.08478 1.13746 1.50370 1.21875 0.95760 0.88582 0.96669 0.94202 1.21537 0.95395 0.96164 1.00477 1.21660 0.99122 0.95335 0.96989 0.90542 1.21606 0.99418 0.98421 0.98667 1.20650 0.85438 0.99084 0.89283 1.44194 1.19702 1.04686 1.64131 1.19400 0.90848 0.97562 1.31309 0.92101 1.25757 0.96651 1.02916 0.99027 1.70183 1.07462 1.32209 1.48171 0.85384 0.77360 0.79920 0.78065 1.20222 1.21898 1.20352 1.20855 0.95299 0.85840 0.94559 0.93269 0.95720 0.89552 0.83153 0.92522 0.90253 0.93809 0.94558 0.91587 0.99251 0.92719 0.94098 0.94302 0.97540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.50 127.69 1.34 2.11 16 2 N -0.70 -19.93 6.67 -514.19 -3.43 -23.35 16 3 C 0.08 2.87 2.30 44.99 0.10 2.97 16 4 H 0.04 1.46 6.00 -2.38 -0.01 1.45 16 5 C -0.10 -3.18 4.71 30.62 0.14 -3.03 16 6 C -0.11 -4.14 3.21 -10.72 -0.03 -4.17 16 7 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 8 C -0.12 -4.41 8.70 71.98 0.63 -3.79 16 9 C 0.18 8.97 4.69 86.36 0.41 9.38 16 10 N -0.60 -31.35 2.43 -699.08 -1.70 -33.05 16 11 C -0.26 -14.76 9.58 84.03 0.81 -13.96 16 12 H 0.06 3.39 7.88 -2.91 -0.02 3.36 16 13 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 14 N -0.93 -56.39 11.19 21.65 0.24 -56.15 16 15 Si 0.96 45.65 29.59 68.60 2.03 47.68 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 19 C 0.16 7.21 5.99 86.36 0.52 7.72 16 20 H 0.05 1.38 7.57 -2.38 -0.02 1.36 16 21 H 0.02 0.57 8.06 -2.39 -0.02 0.55 16 22 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.35 8.15 8.42 -89.70 -0.75 7.40 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 26 H 0.04 1.74 5.97 -2.38 -0.01 1.72 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.05 3.05 6.07 -2.39 -0.01 3.03 16 31 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.04 1.76 7.41 -2.39 -0.02 1.74 16 33 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -63.39 256.58 1.79 -61.60 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.32 Total: 8.36 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 4.33 Total: -5.09 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -4.88 Total: -112.55 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -63.39 1.79 -61.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.047 kcal (2) G-P(sol) polarization free energy of solvation -63.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds