Wall clock time and date at job start Mon Mar 30 2020 02:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46893 * 110.99958 * 2 1 4 4 H 1.09000 * 109.49986 * 324.93531 * 3 2 1 5 5 C 1.53041 * 109.49696 * 204.84101 * 3 2 1 6 6 C 1.53070 * 109.65895 * 178.74766 * 5 3 2 7 7 H 1.08996 * 109.39171 * 301.27441 * 6 5 3 8 8 C 1.53005 * 109.62481 * 181.16640 * 6 5 3 9 9 C 1.53192 * 109.29486 * 61.15317 * 6 5 3 10 10 N 1.46923 * 108.89086 * 305.57609 * 9 6 5 11 11 C 1.36938 * 120.62890 * 233.55909 * 10 9 6 12 12 H 1.08011 * 119.99821 * 151.82869 * 11 10 9 13 13 C 1.38810 * 120.00150 * 331.82504 * 11 10 9 14 14 N 1.31613 * 120.00273 * 343.07447 * 13 11 10 15 15 Si 1.86803 * 119.99828 * 163.06738 * 13 11 10 16 16 H 1.48503 * 109.47179 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47229 * 120.00279 * 15 13 11 18 18 H 1.48502 * 109.47136 * 240.00365 * 15 13 11 19 19 C 1.46928 * 118.73969 * 53.53853 * 10 9 6 20 20 H 1.08999 * 109.47026 * 60.00451 * 1 2 3 21 21 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47032 * 299.99816 * 1 2 3 23 23 H 1.00898 * 110.99932 * 123.95370 * 2 1 3 24 24 H 1.09004 * 109.45782 * 298.70128 * 5 3 2 25 25 H 1.08998 * 109.46417 * 58.67463 * 5 3 2 26 26 H 1.09001 * 109.47329 * 300.11068 * 8 6 5 27 27 H 1.09001 * 109.46800 * 60.10275 * 8 6 5 28 28 H 1.08994 * 109.47415 * 180.11057 * 8 6 5 29 29 H 1.09002 * 109.58742 * 185.72218 * 9 6 5 30 30 H 1.08998 * 109.59351 * 65.43846 * 9 6 5 31 31 H 0.96997 * 120.00271 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.58144 * 66.18005 * 19 10 9 33 33 H 1.08998 * 109.58393 * 186.45981 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3407 2.0124 -0.5903 5 6 3.4007 1.3791 -0.6061 6 6 3.9406 2.8111 -0.6365 7 1 3.2694 3.4385 -1.2230 8 6 5.3337 2.8218 -1.2691 9 6 4.0249 3.3508 0.7947 10 7 2.7091 3.2125 1.4335 11 6 2.0979 4.2923 2.0129 12 1 1.0201 4.3379 2.0675 13 6 2.8634 5.3283 2.5301 14 7 4.1440 5.1434 2.7715 15 14 2.0761 6.9851 2.8835 16 1 0.6351 6.9342 2.5282 17 1 2.2187 7.3031 4.3271 18 1 2.7486 8.0349 2.0766 19 6 2.0612 1.8938 1.4385 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8306 -0.5261 0.7814 24 1 4.0606 0.7572 -0.0010 25 1 3.3605 0.9849 -1.6215 26 1 6.0038 2.1930 -0.6829 27 1 5.2732 2.4376 -2.2874 28 1 5.7165 3.8421 -1.2878 29 1 4.3116 4.4022 0.7724 30 1 4.7656 2.7820 1.3568 31 1 4.6788 5.8672 3.1332 32 1 2.6413 1.2041 2.0517 33 1 1.0532 1.9835 1.8434 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108012215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:15 Heat of formation + Delta-G solvation = -10.324203 kcal Electronic energy + Delta-G solvation = -13405.278359 eV Core-core repulsion = 11272.055361 eV Total energy + Delta-G solvation = -2133.222998 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.84541 -36.48922 -35.10562 -32.93078 -30.60605 -27.49819 -27.19509 -25.61464 -23.46716 -21.99568 -20.72274 -18.72037 -16.94160 -16.68059 -15.86752 -15.44387 -15.35473 -15.21646 -14.42067 -14.34528 -13.68330 -13.33454 -13.23489 -12.90416 -12.84025 -12.68903 -12.48291 -12.22890 -11.96550 -11.84572 -11.49995 -11.22934 -11.18121 -10.60077 -9.47484 -8.65066 -7.89944 -5.38073 1.42986 1.44641 1.55462 2.46980 3.22285 3.26152 3.75600 3.99177 4.16219 4.26874 4.32758 4.50421 4.55575 4.67365 4.74662 4.90376 4.91246 4.99160 5.03525 5.06652 5.17654 5.20794 5.39572 5.45774 5.52666 5.65754 5.78362 6.07834 6.35867 6.49225 7.10766 7.81136 8.33332 9.14723 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033939 B = 0.012208 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.815387 B = 2293.064544 C = 2894.947707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.686 5.686 3 C 0.081 3.919 4 H 0.062 0.938 5 C -0.081 4.081 6 C -0.111 4.111 7 H 0.052 0.948 8 C -0.131 4.131 9 C 0.185 3.815 10 N -0.610 5.610 11 C -0.268 4.268 12 H 0.062 0.938 13 C -0.048 4.048 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.268 1.268 17 H -0.290 1.290 18 H -0.287 1.287 19 C 0.124 3.876 20 H 0.061 0.939 21 H 0.086 0.914 22 H 0.014 0.986 23 H 0.343 0.657 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.051 0.949 30 H -0.006 1.006 31 H 0.251 0.749 32 H 0.011 0.989 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 -7.345 -6.830 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.316 5.316 3 C -0.031 4.031 4 H 0.080 0.920 5 C -0.119 4.119 6 C -0.132 4.132 7 H 0.071 0.929 8 C -0.189 4.189 9 C 0.060 3.940 10 N -0.333 5.333 11 C -0.399 4.399 12 H 0.080 0.920 13 C -0.244 4.244 14 N -0.578 5.578 15 Si 0.795 3.205 16 H -0.192 1.192 17 H -0.217 1.217 18 H -0.213 1.213 19 C -0.003 4.003 20 H 0.080 0.920 21 H 0.105 0.895 22 H 0.033 0.967 23 H 0.161 0.839 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.012 0.988 31 H 0.060 0.940 32 H 0.029 0.971 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.808 -7.326 -7.443 10.814 hybrid contribution -0.362 1.343 1.604 2.123 sum -3.170 -5.983 -5.838 8.941 Atomic orbital electron populations 1.22250 0.87263 1.02564 1.00075 1.60666 1.08464 1.12849 1.49592 1.21916 0.96732 0.88867 0.95544 0.92008 1.21332 0.94544 0.95307 1.00745 1.21677 0.97492 0.96797 0.97212 0.92940 1.21647 0.95219 1.01366 1.00635 1.20660 0.85110 0.98997 0.89244 1.44274 1.19925 1.04602 1.64496 1.19508 0.90934 0.97692 1.31720 0.92045 1.25818 0.96712 1.03057 0.98806 1.70192 1.07569 1.32178 1.47826 0.85213 0.78330 0.79908 0.77027 1.19200 1.21698 1.21347 1.21695 0.95644 0.87148 0.95836 0.91992 0.89492 0.96720 0.83904 0.92932 0.90802 0.92867 0.90885 0.93451 0.93021 0.98828 0.93968 0.97087 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.50 127.69 1.34 2.03 16 2 N -0.69 -19.72 6.61 -514.22 -3.40 -23.11 16 3 C 0.08 2.86 2.62 44.99 0.12 2.98 16 4 H 0.06 2.34 7.80 -2.39 -0.02 2.32 16 5 C -0.08 -2.77 4.78 30.63 0.15 -2.62 16 6 C -0.11 -4.28 2.87 -10.70 -0.03 -4.31 16 7 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 8 C -0.13 -4.14 9.21 71.98 0.66 -3.48 16 9 C 0.19 9.20 4.58 86.36 0.40 9.59 16 10 N -0.61 -31.77 3.00 -699.10 -2.09 -33.86 16 11 C -0.27 -15.24 9.58 84.03 0.81 -14.43 16 12 H 0.06 3.43 7.89 -2.90 -0.02 3.41 16 13 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 14 N -0.93 -56.01 11.20 21.65 0.24 -55.77 16 15 Si 0.97 45.52 29.59 68.60 2.03 47.55 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 19 C 0.12 5.35 5.77 86.36 0.50 5.85 16 20 H 0.06 1.52 8.06 -2.39 -0.02 1.50 16 21 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.01 0.38 7.56 -2.39 -0.02 0.36 16 23 H 0.34 9.26 8.50 -89.70 -0.76 8.50 16 24 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 2.90 6.06 -2.39 -0.01 2.88 16 30 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.01 0.49 8.05 -2.39 -0.02 0.47 16 33 H 0.04 1.83 7.41 -2.39 -0.02 1.82 16 Total: -1.00 -62.76 261.30 1.44 -61.32 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.30 Total: 10.59 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 4.35 Total: -6.72 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -5.25 Total: -112.74 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -62.76 1.44 -61.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.996 kcal (2) G-P(sol) polarization free energy of solvation -62.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds