Wall clock time and date at job start Mon Mar 30 2020 02:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.72818 * 2 1 4 4 C 1.54935 * 110.66782 * 236.90238 * 2 1 3 5 5 C 1.54592 * 102.92046 * 204.15031 * 4 2 1 6 6 H 1.08998 * 110.31365 * 263.04219 * 5 4 2 7 7 C 1.53005 * 110.30842 * 140.87586 * 5 4 2 8 8 N 1.46895 * 109.47268 * 177.83305 * 7 5 4 9 9 C 1.53995 * 105.14127 * 21.96206 * 5 4 2 10 10 N 1.47895 * 107.05824 * 1.21857 * 9 5 4 11 11 C 1.46900 * 111.00311 * 214.16047 * 10 9 5 12 12 C 1.50698 * 109.47141 * 64.09916 * 11 10 9 13 13 H 1.07992 * 119.99773 * 355.33405 * 12 11 10 14 14 C 1.37873 * 119.99741 * 175.33307 * 12 11 10 15 15 N 1.31521 * 120.00239 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99945 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47260 * 59.99650 * 16 14 12 18 18 H 1.48499 * 109.47317 * 300.00094 * 16 14 12 19 19 H 1.48497 * 109.47515 * 180.02562 * 16 14 12 20 20 H 1.09006 * 109.46937 * 298.35558 * 1 2 3 21 21 H 1.08995 * 109.46863 * 58.35571 * 1 2 3 22 22 H 1.09001 * 109.47247 * 178.35729 * 1 2 3 23 23 H 1.08998 * 110.72454 * 85.79678 * 4 2 1 24 24 H 1.08997 * 110.72258 * 322.50996 * 4 2 1 25 25 H 1.09004 * 109.47093 * 297.83087 * 7 5 4 26 26 H 1.08997 * 109.47174 * 57.82715 * 7 5 4 27 27 H 1.00893 * 111.00596 * 56.04553 * 8 7 5 28 28 H 1.00906 * 110.99975 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.91559 * 241.86993 * 9 5 4 30 30 H 1.09000 * 109.92089 * 120.58062 * 9 5 4 31 31 H 1.09001 * 109.46543 * 304.10048 * 11 10 9 32 32 H 1.08997 * 109.46969 * 184.10197 * 11 10 9 33 33 H 0.96999 * 119.99792 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0768 -0.7916 -1.2144 5 6 3.4852 -1.2197 -0.7422 6 1 4.2373 -0.5258 -1.1177 7 6 3.7929 -2.6431 -1.2116 8 7 5.1534 -3.0117 -0.7981 9 6 3.4278 -1.1648 0.7957 10 7 2.0542 -0.7589 1.1643 11 6 2.0580 0.0720 2.3758 12 6 2.7941 1.3579 2.1007 13 1 3.2815 1.5080 1.1488 14 6 2.8454 2.3425 3.0644 15 7 2.2522 2.1594 4.2239 16 14 3.7573 3.9367 2.7233 17 1 3.1484 4.6140 1.5503 18 1 5.1839 3.6396 2.4378 19 1 3.6650 4.8237 3.9107 20 1 -0.3633 0.4881 0.9044 21 1 -0.3633 0.5391 -0.8748 22 1 -0.3634 -1.0272 -0.0295 23 1 2.1430 -0.1513 -2.0940 24 1 1.4561 -1.6643 -1.4171 25 1 3.0778 -3.3350 -0.7664 26 1 3.7174 -2.6917 -2.2979 27 1 5.2677 -2.9124 0.1994 28 1 5.3806 -3.9486 -1.0963 29 1 4.1440 -0.4322 1.1681 30 1 3.6486 -2.1481 1.2109 31 1 2.5548 -0.4656 3.1834 32 1 1.0315 0.2959 2.6659 33 1 1.7784 1.3317 4.4009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126932695.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:05 Heat of formation + Delta-G solvation = -35.416062 kcal Electronic energy + Delta-G solvation = -13302.430736 eV Core-core repulsion = 11168.119673 eV Total energy + Delta-G solvation = -2134.311062 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38197 -36.37983 -34.95622 -32.48729 -31.60089 -27.90219 -26.44941 -25.66524 -23.84926 -21.27921 -20.65183 -18.69592 -17.62987 -16.76777 -15.87287 -15.67050 -15.51255 -15.18934 -14.63783 -14.11716 -14.07585 -13.47054 -13.29003 -13.21987 -12.64847 -12.44638 -12.11369 -12.03245 -11.98280 -11.66354 -11.53117 -11.37199 -11.22850 -10.59681 -9.61265 -9.09434 -8.66549 -6.43395 1.47238 1.54531 1.73965 2.50979 3.10525 3.32716 3.57465 3.77636 3.85435 4.13371 4.36017 4.47575 4.59663 4.65741 4.73406 4.77910 4.83560 4.88958 4.96472 5.02639 5.09387 5.16039 5.28658 5.38499 5.45727 5.80452 5.94035 6.16882 6.31819 6.41527 6.47407 6.59857 7.38240 8.67078 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035685 B = 0.010802 C = 0.009702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.461423 B = 2591.601654 C = 2885.196071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 H 0.040 0.960 4 C -0.102 4.102 5 C -0.090 4.090 6 H 0.067 0.933 7 C 0.082 3.918 8 N -0.859 5.859 9 C 0.047 3.953 10 N -0.517 5.517 11 C 0.178 3.822 12 C -0.624 4.624 13 H 0.051 0.949 14 C -0.032 4.032 15 N -0.933 5.933 16 Si 1.111 2.889 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.282 1.282 20 H 0.025 0.975 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.030 0.970 26 H 0.085 0.915 27 H 0.340 0.660 28 H 0.351 0.649 29 H 0.024 0.976 30 H 0.064 0.936 31 H -0.008 1.008 32 H 0.001 0.999 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 -7.347 -11.884 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.056 4.056 3 H 0.058 0.942 4 C -0.140 4.140 5 C -0.110 4.110 6 H 0.086 0.914 7 C -0.049 4.049 8 N -0.390 5.390 9 C -0.081 4.081 10 N -0.241 5.241 11 C 0.051 3.949 12 C -0.663 4.663 13 H 0.069 0.931 14 C -0.231 4.231 15 N -0.571 5.571 16 Si 0.933 3.067 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.207 1.207 20 H 0.044 0.956 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.049 0.951 26 H 0.104 0.896 27 H 0.153 0.847 28 H 0.165 0.835 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.010 0.990 32 H 0.019 0.981 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.683 -5.772 -11.568 13.037 hybrid contribution -0.453 -1.408 0.529 1.571 sum 1.230 -7.180 -11.039 13.226 Atomic orbital electron populations 1.21539 0.93820 1.01825 1.00746 1.22809 0.96127 0.96317 0.90383 0.94223 1.22538 0.94900 1.00105 0.96477 1.21975 0.97485 0.97974 0.93552 0.91429 1.21715 0.88959 0.93556 1.00620 1.58748 1.26651 1.32898 1.20750 1.22735 0.90572 0.98998 0.95810 1.64999 1.18443 1.37084 1.03550 1.19602 0.94577 0.91111 0.89650 1.22720 1.37017 1.03625 1.02908 0.93070 1.27262 0.97020 1.06208 0.92569 1.70920 1.33667 1.28172 1.24302 0.83001 0.75645 0.71858 0.76197 1.19507 1.19730 1.20745 0.95599 0.90617 0.91695 0.89838 0.89613 0.95136 0.89620 0.84749 0.83526 0.95710 0.91818 0.99037 0.98127 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 9.49 71.98 0.68 -3.55 16 2 C 0.05 2.04 2.67 45.26 0.12 2.16 16 3 H 0.04 1.83 5.86 -2.39 -0.01 1.81 16 4 C -0.10 -3.03 6.04 31.80 0.19 -2.83 16 5 C -0.09 -2.82 3.25 -9.91 -0.03 -2.85 16 6 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 7 C 0.08 2.01 5.96 86.31 0.51 2.52 16 8 N -0.86 -19.98 9.62 -186.72 -1.80 -21.77 16 9 C 0.05 1.87 5.55 86.45 0.48 2.35 16 10 N -0.52 -22.91 5.23 -862.79 -4.51 -27.43 16 11 C 0.18 9.64 4.45 85.56 0.38 10.02 16 12 C -0.62 -35.52 6.92 25.60 0.18 -35.35 16 13 H 0.05 2.89 6.04 -2.91 -0.02 2.87 16 14 C -0.03 -1.86 5.46 84.65 0.46 -1.40 16 15 N -0.93 -58.29 13.65 21.45 0.29 -58.00 16 16 Si 1.11 50.97 29.90 68.60 2.05 53.02 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H 0.02 1.02 7.60 -2.38 -0.02 1.00 16 21 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 22 H 0.06 2.05 8.13 -2.39 -0.02 2.03 16 23 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.09 2.24 7.76 -2.39 -0.02 2.22 16 25 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.34 8.35 7.64 -89.70 -0.69 7.66 16 28 H 0.35 6.25 9.08 -89.69 -0.81 5.43 16 29 H 0.02 1.14 6.52 -2.38 -0.02 1.12 16 30 H 0.06 2.34 6.84 -2.39 -0.02 2.32 16 31 H -0.01 -0.49 8.13 -2.39 -0.02 -0.51 16 32 H 0.00 0.04 7.29 -2.39 -0.02 0.02 16 33 H 0.26 16.21 7.19 -92.71 -0.67 15.54 16 Total: -1.00 -65.26 258.31 -1.28 -66.55 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.30 Total: 16.56 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 2.98 Total: -28.93 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -6.02 Total: -107.20 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.02 kcal Total: -65.26 -1.28 -66.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126932695.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.132 kcal (2) G-P(sol) polarization free energy of solvation -65.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds