Wall clock time and date at job start Mon Mar 30 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.90908 * 2 1 4 4 C 1.54000 * 109.91357 * 238.90071 * 2 1 3 5 5 C 1.54598 * 105.22213 * 239.17275 * 4 2 1 6 6 H 1.09003 * 110.72246 * 96.45403 * 5 4 2 7 7 C 1.53005 * 110.72373 * 219.73164 * 5 4 2 8 8 N 1.46899 * 109.47256 * 185.00415 * 7 5 4 9 9 C 1.55092 * 102.84998 * 338.15300 * 5 4 2 10 10 N 1.47897 * 110.08505 * 121.21407 * 2 1 3 11 11 C 1.46906 * 110.99555 * 265.28696 * 10 2 1 12 12 C 1.50703 * 109.46769 * 169.99928 * 11 10 2 13 13 H 1.08001 * 120.00143 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00002 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99454 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00160 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46990 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46922 * 119.99837 * 16 14 12 19 19 H 1.48497 * 109.47395 * 239.99790 * 16 14 12 20 20 H 1.09001 * 109.47504 * 181.10148 * 1 2 3 21 21 H 1.09001 * 109.46784 * 301.10173 * 1 2 3 22 22 H 1.09004 * 109.47389 * 61.10142 * 1 2 3 23 23 H 1.09002 * 110.31026 * 358.14029 * 4 2 1 24 24 H 1.09000 * 110.30915 * 120.21058 * 4 2 1 25 25 H 1.09002 * 109.46977 * 305.00602 * 7 5 4 26 26 H 1.09001 * 109.46574 * 65.00226 * 7 5 4 27 27 H 1.00894 * 110.99950 * 56.04580 * 8 7 5 28 28 H 1.00901 * 110.99867 * 180.02562 * 8 7 5 29 29 H 1.09003 * 110.59460 * 278.87433 * 9 5 4 30 30 H 1.08995 * 110.83386 * 155.84768 * 9 5 4 31 31 H 1.08995 * 109.46892 * 289.99567 * 11 10 2 32 32 H 1.09001 * 109.47127 * 50.00138 * 11 10 2 33 33 H 0.97007 * 119.99729 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0545 -0.7479 -1.2398 5 6 2.9115 -1.9074 -0.6820 6 1 2.3305 -2.8285 -0.6353 7 6 4.1726 -2.1032 -1.5260 8 7 4.9043 -3.2833 -1.0466 9 6 3.2733 -1.4142 0.7432 10 7 2.0378 -0.7198 1.1879 11 6 2.3244 0.2130 2.2860 12 6 2.6014 -0.5649 3.5466 13 1 2.5675 -1.6443 3.5335 14 6 2.8981 0.1013 4.7168 15 7 2.9399 1.4157 4.7325 16 14 3.2407 -0.8630 6.2795 17 1 3.1325 -2.3170 5.9977 18 1 4.6107 -0.5534 6.7618 19 1 2.2521 -0.4851 7.3211 20 1 -0.3634 -1.0275 0.0198 21 1 -0.3633 0.5309 0.8800 22 1 -0.3634 0.4966 -0.8997 23 1 1.2227 -1.1398 -1.8253 24 1 2.6669 -0.0847 -1.8507 25 1 3.8926 -2.2483 -2.5694 26 1 4.8080 -1.2218 -1.4395 27 1 4.3152 -4.1024 -1.0560 28 1 5.7422 -3.4339 -1.5881 29 1 4.1129 -0.7201 0.7071 30 1 3.4990 -2.2553 1.3988 31 1 3.1963 0.8160 2.0322 32 1 1.4649 0.8648 2.4427 33 1 3.1483 1.8844 5.5558 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126933154.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:10 Heat of formation + Delta-G solvation = -8.772908 kcal Electronic energy + Delta-G solvation = -13046.513303 eV Core-core repulsion = 10913.357575 eV Total energy + Delta-G solvation = -2133.155728 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.64301 -34.78938 -32.90175 -30.81897 -30.28725 -26.43150 -25.11288 -23.89257 -21.53713 -19.90462 -19.20349 -16.26985 -15.80767 -15.05419 -14.64264 -14.37429 -13.92266 -13.70137 -12.90811 -12.74745 -12.03347 -11.91228 -11.64454 -11.45625 -11.15009 -10.89311 -10.52349 -10.33705 -10.28437 -10.16648 -10.04384 -9.69134 -9.07531 -8.55443 -8.35754 -7.22710 -5.95296 -3.95583 3.36459 3.43268 3.49502 4.49483 4.59863 4.90709 5.13837 5.28789 5.39344 5.42892 5.49315 5.76107 5.80930 5.99560 6.03605 6.10464 6.25722 6.32033 6.47635 6.60318 6.77322 6.81202 6.92206 7.20627 7.31183 7.41077 7.50290 7.89688 8.12973 8.29542 8.62782 9.13008 9.68363 11.15895 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034174 B = 0.010009 C = 0.008293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.144175 B = 2796.684881 C = 3375.629024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 H 0.041 0.959 4 C -0.119 4.119 5 C -0.095 4.095 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.847 5.847 9 C 0.070 3.930 10 N -0.514 5.514 11 C 0.186 3.814 12 C -0.500 4.500 13 H 0.063 0.937 14 C 0.052 3.948 15 N -0.901 5.901 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.285 1.285 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.044 0.956 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.020 0.980 26 H 0.070 0.930 27 H 0.339 0.661 28 H 0.336 0.664 29 H 0.034 0.966 30 H 0.079 0.921 31 H -0.009 1.009 32 H 0.028 0.972 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -5.498 -12.363 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.052 4.052 3 H 0.059 0.941 4 C -0.158 4.158 5 C -0.114 4.114 6 H 0.093 0.907 7 C -0.058 4.058 8 N -0.376 5.376 9 C -0.058 4.058 10 N -0.239 5.239 11 C 0.060 3.940 12 C -0.539 4.539 13 H 0.081 0.919 14 C -0.148 4.148 15 N -0.541 5.541 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.211 1.211 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.039 0.961 26 H 0.088 0.912 27 H 0.151 0.849 28 H 0.148 0.852 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.009 0.991 32 H 0.046 0.954 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.179 -5.293 -11.342 12.518 hybrid contribution 0.653 -0.068 -0.286 0.716 sum 0.474 -5.361 -11.628 12.813 Atomic orbital electron populations 1.21695 0.94988 1.01602 1.00400 1.22292 0.95802 0.96189 0.90898 0.94064 1.22476 0.98879 0.97002 0.97435 1.22170 0.94548 0.98402 0.96303 0.90708 1.21825 0.95069 0.93899 0.95023 1.58613 1.10292 1.06951 1.61767 1.22926 0.91698 0.98323 0.92814 1.64786 1.26129 1.27922 1.05042 1.19864 0.95221 0.90609 0.88285 1.21195 1.45878 0.93633 0.93167 0.91880 1.24999 0.95815 0.94887 0.99102 1.69978 1.50001 1.06706 1.27452 0.86448 0.77649 0.80295 0.83092 1.19623 1.21169 1.21108 0.92539 0.92617 0.93738 0.91744 0.92306 0.96149 0.91178 0.84874 0.85181 0.94777 0.90296 0.99094 0.95407 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.32 37.15 0.35 -1.83 16 2 C 0.06 1.08 3.04 -66.65 -0.20 0.88 16 3 H 0.04 0.82 7.77 -51.93 -0.40 0.42 16 4 C -0.12 -1.81 6.14 -25.37 -0.16 -1.96 16 5 C -0.09 -1.48 3.22 -88.67 -0.29 -1.77 16 6 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 7 C 0.07 0.95 6.10 -3.82 -0.02 0.93 16 8 N -0.85 -10.35 9.55 -10.37 -0.10 -10.45 16 9 C 0.07 1.44 5.50 -1.81 -0.01 1.43 16 10 N -0.51 -11.64 4.87 -223.90 -1.09 -12.73 16 11 C 0.19 5.06 4.47 -4.97 -0.02 5.04 16 12 C -0.50 -14.64 8.91 -34.44 -0.31 -14.95 16 13 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 16 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.87 7.69 -51.93 -0.40 0.47 16 24 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16 27 H 0.34 3.70 8.99 -39.30 -0.35 3.34 16 28 H 0.34 3.31 9.08 -39.29 -0.36 2.96 16 29 H 0.03 0.74 7.61 -51.93 -0.40 0.35 16 30 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 31 H -0.01 -0.25 7.83 -51.93 -0.41 -0.66 16 32 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 268.61 15.07 4.05 4.05 Total: -1.00 -31.13 268.61 -7.82 -38.95 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.64 Total: 0.46 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -0.76 Total: -10.79 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.45 Total: -50.02 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.13 -7.82 -38.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126933154.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.179 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds