Wall clock time and date at job start Mon Mar 30 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.90908 * 2 1 4 4 C 1.54000 * 109.91357 * 238.90071 * 2 1 3 5 5 C 1.54598 * 105.22213 * 239.17275 * 4 2 1 6 6 H 1.09003 * 110.72246 * 96.45403 * 5 4 2 7 7 C 1.53005 * 110.72373 * 219.73164 * 5 4 2 8 8 N 1.46899 * 109.47256 * 185.00415 * 7 5 4 9 9 C 1.55092 * 102.84998 * 338.15300 * 5 4 2 10 10 N 1.47897 * 110.08505 * 121.21407 * 2 1 3 11 11 C 1.46906 * 110.99555 * 265.28696 * 10 2 1 12 12 C 1.50703 * 109.46769 * 169.99928 * 11 10 2 13 13 H 1.08001 * 120.00143 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00002 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99454 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00160 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46990 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46922 * 119.99837 * 16 14 12 19 19 H 1.48497 * 109.47395 * 239.99790 * 16 14 12 20 20 H 1.09001 * 109.47504 * 181.10148 * 1 2 3 21 21 H 1.09001 * 109.46784 * 301.10173 * 1 2 3 22 22 H 1.09004 * 109.47389 * 61.10142 * 1 2 3 23 23 H 1.09002 * 110.31026 * 358.14029 * 4 2 1 24 24 H 1.09000 * 110.30915 * 120.21058 * 4 2 1 25 25 H 1.09002 * 109.46977 * 305.00602 * 7 5 4 26 26 H 1.09001 * 109.46574 * 65.00226 * 7 5 4 27 27 H 1.00894 * 110.99950 * 56.04580 * 8 7 5 28 28 H 1.00901 * 110.99867 * 180.02562 * 8 7 5 29 29 H 1.09003 * 110.59460 * 278.87433 * 9 5 4 30 30 H 1.08995 * 110.83386 * 155.84768 * 9 5 4 31 31 H 1.08995 * 109.46892 * 289.99567 * 11 10 2 32 32 H 1.09001 * 109.47127 * 50.00138 * 11 10 2 33 33 H 0.97007 * 119.99729 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0545 -0.7479 -1.2398 5 6 2.9115 -1.9074 -0.6820 6 1 2.3305 -2.8285 -0.6353 7 6 4.1726 -2.1032 -1.5260 8 7 4.9043 -3.2833 -1.0466 9 6 3.2733 -1.4142 0.7432 10 7 2.0378 -0.7198 1.1879 11 6 2.3244 0.2130 2.2860 12 6 2.6014 -0.5649 3.5466 13 1 2.5675 -1.6443 3.5335 14 6 2.8981 0.1013 4.7168 15 7 2.9399 1.4157 4.7325 16 14 3.2407 -0.8630 6.2795 17 1 3.1325 -2.3170 5.9977 18 1 4.6107 -0.5534 6.7618 19 1 2.2521 -0.4851 7.3211 20 1 -0.3634 -1.0275 0.0198 21 1 -0.3633 0.5309 0.8800 22 1 -0.3634 0.4966 -0.8997 23 1 1.2227 -1.1398 -1.8253 24 1 2.6669 -0.0847 -1.8507 25 1 3.8926 -2.2483 -2.5694 26 1 4.8080 -1.2218 -1.4395 27 1 4.3152 -4.1024 -1.0560 28 1 5.7422 -3.4339 -1.5881 29 1 4.1129 -0.7201 0.7071 30 1 3.4990 -2.2553 1.3988 31 1 3.1963 0.8160 2.0322 32 1 1.4649 0.8648 2.4427 33 1 3.1483 1.8844 5.5558 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126933154.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:10 Heat of formation + Delta-G solvation = -32.673858 kcal Electronic energy + Delta-G solvation = -13047.549726 eV Core-core repulsion = 10913.357575 eV Total energy + Delta-G solvation = -2134.192151 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.17580 -36.11527 -34.92874 -32.60791 -31.61575 -28.46765 -26.47183 -25.48424 -23.37031 -21.35100 -20.72256 -18.47784 -17.11643 -16.68047 -16.23573 -15.63596 -15.54800 -15.13571 -14.64531 -14.31283 -13.92518 -13.37661 -13.22590 -13.08963 -12.77368 -12.60223 -12.33302 -12.13963 -11.80670 -11.75257 -11.55643 -11.34906 -11.19818 -10.63136 -9.49213 -9.10101 -8.22360 -6.32675 1.38666 1.39546 1.54004 2.39365 3.09462 3.33467 3.57964 3.79471 3.99523 4.17209 4.23680 4.49571 4.54326 4.67801 4.77148 4.78842 4.89216 4.90513 5.02295 5.10370 5.16507 5.18203 5.35253 5.42988 5.47314 5.65605 6.04482 6.30223 6.33209 6.59342 6.70491 6.83660 7.37239 8.89282 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034174 B = 0.010009 C = 0.008293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.144175 B = 2796.684881 C = 3375.629024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.046 3.954 3 H 0.022 0.978 4 C -0.108 4.108 5 C -0.081 4.081 6 H 0.083 0.917 7 C 0.080 3.920 8 N -0.863 5.863 9 C 0.070 3.930 10 N -0.525 5.525 11 C 0.204 3.796 12 C -0.521 4.521 13 H 0.058 0.942 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.972 3.028 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.275 1.275 20 H 0.062 0.938 21 H 0.028 0.972 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.348 0.652 28 H 0.351 0.649 29 H 0.011 0.989 30 H 0.057 0.943 31 H -0.042 1.042 32 H -0.001 1.001 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -7.003 -13.584 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.063 4.063 3 H 0.040 0.960 4 C -0.147 4.147 5 C -0.101 4.101 6 H 0.101 0.899 7 C -0.051 4.051 8 N -0.395 5.395 9 C -0.058 4.058 10 N -0.249 5.249 11 C 0.077 3.923 12 C -0.560 4.560 13 H 0.076 0.924 14 C -0.199 4.199 15 N -0.577 5.577 16 Si 0.796 3.204 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.201 1.201 20 H 0.081 0.919 21 H 0.047 0.953 22 H 0.099 0.901 23 H 0.113 0.887 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.161 0.839 28 H 0.164 0.836 29 H 0.030 0.970 30 H 0.076 0.924 31 H -0.025 1.025 32 H 0.018 0.982 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.342 -6.812 -12.590 14.319 hybrid contribution 0.701 0.431 0.073 0.826 sum 0.359 -6.381 -12.517 14.054 Atomic orbital electron populations 1.21666 0.93319 1.02068 1.00981 1.22512 0.97189 0.95446 0.91140 0.95989 1.22448 0.99939 0.96511 0.95782 1.22107 0.96132 0.98699 0.93157 0.89850 1.21698 0.93551 0.93935 0.95962 1.58553 1.11176 1.07144 1.62580 1.22883 0.90222 0.96806 0.95885 1.64709 1.27080 1.27225 1.05879 1.19469 0.92397 0.90503 0.89908 1.21463 1.46543 0.93531 0.94426 0.92353 1.25969 0.95154 0.95952 1.02826 1.70102 1.50393 1.08444 1.28725 0.85296 0.77866 0.78914 0.78323 1.18812 1.20233 1.20054 0.91887 0.95264 0.90105 0.88664 0.90593 0.93009 0.92278 0.83913 0.83564 0.97024 0.92448 1.02482 0.98241 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 9.32 71.98 0.67 -3.32 16 2 C 0.05 1.71 3.04 45.06 0.14 1.85 16 3 H 0.02 0.90 7.77 -2.39 -0.02 0.88 16 4 C -0.11 -2.98 6.14 31.48 0.19 -2.79 16 5 C -0.08 -2.39 3.22 -9.53 -0.03 -2.42 16 6 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 7 C 0.08 1.87 6.10 86.30 0.53 2.40 16 8 N -0.86 -19.24 9.55 -186.71 -1.78 -21.02 16 9 C 0.07 2.92 5.50 86.70 0.48 3.40 16 10 N -0.52 -24.39 4.87 -862.29 -4.20 -28.60 16 11 C 0.20 11.72 4.47 85.56 0.38 12.10 16 12 C -0.52 -31.55 8.91 25.60 0.23 -31.32 16 13 H 0.06 3.51 7.81 -2.91 -0.02 3.48 16 14 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 15 N -0.94 -58.73 13.29 21.45 0.28 -58.45 16 16 Si 0.97 46.32 29.54 68.60 2.03 48.34 16 17 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.09 2.11 7.69 -2.39 -0.02 2.09 16 24 H 0.08 1.86 7.85 -2.39 -0.02 1.84 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.53 8.00 -2.39 -0.02 1.51 16 27 H 0.35 6.72 8.99 -89.70 -0.81 5.92 16 28 H 0.35 6.10 9.08 -89.69 -0.81 5.28 16 29 H 0.01 0.52 7.61 -2.39 -0.02 0.51 16 30 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 31 H -0.04 -2.66 7.83 -2.39 -0.02 -2.67 16 32 H 0.00 -0.03 8.08 -2.39 -0.02 -0.05 16 33 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 Total: -1.00 -69.40 268.61 -1.17 -70.56 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -0.54 Total: 8.89 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 3.05 Total: -19.73 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -5.70 Total: -108.07 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -69.40 -1.17 -70.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126933154.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.890 kcal (2) G-P(sol) polarization free energy of solvation -69.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds