Wall clock time and date at job start Mon Mar 30 2020 02:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.41990 * 2 1 4 4 C 1.54907 * 110.37067 * 122.31269 * 2 1 3 5 5 C 1.55144 * 101.65071 * 155.90111 * 4 2 1 6 6 H 1.09000 * 110.70871 * 82.72682 * 5 4 2 7 7 C 1.52996 * 110.70382 * 205.96104 * 5 4 2 8 8 N 1.46904 * 109.47154 * 180.02562 * 7 5 4 9 9 C 1.54320 * 103.01592 * 324.34201 * 5 4 2 10 10 N 1.47436 * 107.23579 * 22.28922 * 9 5 4 11 11 C 1.46895 * 111.00519 * 123.25181 * 10 9 5 12 12 C 1.50702 * 109.46770 * 69.87249 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72214 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 H 1.08994 * 109.46990 * 180.86295 * 1 2 3 21 21 H 1.09002 * 109.47037 * 300.86148 * 1 2 3 22 22 H 1.08996 * 109.47140 * 60.85948 * 1 2 3 23 23 H 1.09000 * 110.99387 * 37.80517 * 4 2 1 24 24 H 1.09006 * 110.98952 * 273.98959 * 4 2 1 25 25 H 1.08998 * 109.47275 * 300.05144 * 7 5 4 26 26 H 1.09008 * 109.47069 * 60.05365 * 7 5 4 27 27 H 1.00896 * 111.00031 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99728 * 303.95681 * 8 7 5 29 29 H 1.08994 * 109.88888 * 262.87689 * 9 5 4 30 30 H 1.09003 * 110.02061 * 141.76550 * 9 5 4 31 31 H 1.09004 * 109.47258 * 309.87573 * 11 10 9 32 32 H 1.08994 * 109.47601 * 189.87165 * 11 10 9 33 33 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0693 -0.7763 1.2273 5 6 3.4786 -1.1995 0.7358 6 1 4.1942 -0.3888 0.8729 7 6 3.9465 -2.4640 1.4590 8 7 5.2815 -2.8397 0.9745 9 6 3.2535 -1.4808 -0.7647 10 7 2.0448 -0.7409 -1.1713 11 6 2.3357 0.1716 -2.2850 12 6 2.6029 -0.6289 -3.5336 13 1 2.5604 -1.7076 -3.5029 14 6 2.8955 0.0161 -4.7166 15 7 2.9469 1.3297 -4.7541 16 14 3.2191 -0.9759 -6.2660 17 1 3.1012 -2.4243 -5.9601 18 1 2.2252 -0.6076 -7.3062 19 1 4.5876 -0.6845 -6.7637 20 1 -0.3633 -1.0275 0.0155 21 1 -0.3633 0.5272 0.8822 22 1 -0.3633 0.5004 -0.8976 23 1 1.4515 -1.6487 1.4398 24 1 2.1388 -0.1270 2.1002 25 1 3.9889 -2.2745 2.5316 26 1 3.2467 -3.2759 1.2608 27 1 5.6128 -3.6729 1.4370 28 1 5.2823 -2.9580 -0.0276 29 1 3.1056 -2.5489 -0.9236 30 1 4.1113 -1.1355 -1.3419 31 1 3.2131 0.7716 -2.0435 32 1 1.4811 0.8277 -2.4500 33 1 3.1532 1.7834 -5.5863 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126933334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:12 Heat of formation + Delta-G solvation = -33.603932 kcal Electronic energy + Delta-G solvation = -13086.377226 eV Core-core repulsion = 10952.144743 eV Total energy + Delta-G solvation = -2134.232482 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.25130 -36.11190 -34.93049 -32.60225 -31.57565 -28.46021 -26.51629 -25.56481 -23.47100 -21.41447 -20.41832 -18.36328 -17.48453 -16.94456 -16.34737 -15.66994 -15.38767 -14.80288 -14.48448 -14.18873 -13.99979 -13.68623 -13.16314 -13.09647 -12.88127 -12.72289 -12.34997 -12.11303 -11.87407 -11.67651 -11.49944 -11.43853 -11.19623 -10.64600 -9.59134 -9.01479 -8.22542 -6.33372 1.38403 1.39169 1.53052 2.38387 3.09220 3.32870 3.53428 3.78499 3.86183 4.13706 4.32251 4.45378 4.54140 4.64181 4.73060 4.81581 4.91597 4.95609 5.01098 5.09015 5.12592 5.17729 5.30160 5.42533 5.45275 5.65474 6.05053 6.21241 6.36666 6.60888 6.63234 6.83534 7.36806 8.88753 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033641 B = 0.010255 C = 0.008431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.120644 B = 2729.637160 C = 3320.331902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 H 0.026 0.974 4 C -0.102 4.102 5 C -0.105 4.105 6 H 0.063 0.937 7 C 0.083 3.917 8 N -0.862 5.862 9 C 0.063 3.937 10 N -0.535 5.535 11 C 0.208 3.792 12 C -0.521 4.521 13 H 0.060 0.940 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.972 3.028 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.277 1.277 20 H 0.062 0.938 21 H 0.080 0.920 22 H 0.029 0.971 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.351 0.649 28 H 0.341 0.659 29 H 0.063 0.937 30 H 0.027 0.973 31 H -0.043 1.043 32 H -0.002 1.002 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 -7.158 12.004 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.056 4.056 3 H 0.044 0.956 4 C -0.140 4.140 5 C -0.125 4.125 6 H 0.081 0.919 7 C -0.048 4.048 8 N -0.393 5.393 9 C -0.065 4.065 10 N -0.259 5.259 11 C 0.081 3.919 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.796 3.204 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.203 1.203 20 H 0.081 0.919 21 H 0.099 0.901 22 H 0.049 0.951 23 H 0.107 0.893 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.054 0.946 27 H 0.165 0.835 28 H 0.153 0.847 29 H 0.081 0.919 30 H 0.045 0.955 31 H -0.026 1.026 32 H 0.016 0.984 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.430 -6.663 12.005 13.737 hybrid contribution 0.412 -0.111 -1.365 1.430 sum -0.017 -6.773 10.640 12.613 Atomic orbital electron populations 1.21601 0.93236 1.02176 1.00999 1.22706 0.96969 0.95292 0.90642 0.95615 1.22717 0.94496 1.00460 0.96335 1.22421 0.97198 0.98677 0.94198 0.91866 1.21660 0.89147 0.94529 0.99422 1.58719 1.26377 1.43094 1.11129 1.22616 0.91107 0.98285 0.94465 1.63537 1.29109 1.26881 1.06394 1.19481 0.92260 0.90638 0.89478 1.21473 1.46687 0.93565 0.94249 0.92216 1.25970 0.95155 0.96036 1.02735 1.70104 1.50309 1.09109 1.28091 0.85300 0.77814 0.78944 0.78350 1.18699 1.20261 1.20267 0.91855 0.90135 0.95127 0.89317 0.88999 0.89516 0.94630 0.83497 0.84710 0.91885 0.95482 1.02559 0.98357 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 9.59 71.98 0.69 -3.24 16 2 C 0.05 1.92 3.01 45.39 0.14 2.06 16 3 H 0.03 1.04 7.81 -2.39 -0.02 1.02 16 4 C -0.10 -2.80 5.94 31.98 0.19 -2.61 16 5 C -0.11 -3.21 3.20 -9.61 -0.03 -3.24 16 6 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 7 C 0.08 1.97 6.16 86.30 0.53 2.50 16 8 N -0.86 -20.41 9.62 -186.71 -1.80 -22.21 16 9 C 0.06 2.52 5.16 86.65 0.45 2.96 16 10 N -0.53 -24.20 4.80 -865.19 -4.15 -28.35 16 11 C 0.21 11.71 4.30 85.56 0.37 12.08 16 12 C -0.52 -30.79 8.66 25.60 0.22 -30.57 16 13 H 0.06 3.47 7.78 -2.91 -0.02 3.45 16 14 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 15 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16 16 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 17 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 21 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.09 2.17 7.96 -2.39 -0.02 2.15 16 24 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.04 0.80 8.06 -2.38 -0.02 0.78 16 27 H 0.35 6.33 9.08 -89.70 -0.81 5.52 16 28 H 0.34 8.72 8.21 -89.69 -0.74 7.98 16 29 H 0.06 2.38 7.76 -2.39 -0.02 2.36 16 30 H 0.03 1.23 7.31 -2.39 -0.02 1.21 16 31 H -0.04 -2.66 7.96 -2.38 -0.02 -2.68 16 32 H 0.00 -0.10 8.07 -2.39 -0.02 -0.12 16 33 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -67.12 267.22 -1.09 -68.21 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -0.47 Total: 12.31 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 3.02 Total: -19.66 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -5.67 Total: -108.30 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -67.12 -1.09 -68.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126933334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.607 kcal (2) G-P(sol) polarization free energy of solvation -67.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds