Wall clock time and date at job start Mon Mar 30 2020 02:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47128 * 2 1 4 4 H 1.09002 * 109.50134 * 304.93620 * 3 2 1 5 5 C 1.53200 * 109.49917 * 65.00234 * 3 2 1 6 6 N 1.46923 * 108.77283 * 174.58448 * 5 3 2 7 7 C 1.36940 * 120.62634 * 126.41583 * 6 5 3 8 8 H 1.08001 * 120.00319 * 332.59199 * 7 6 5 9 9 C 1.38813 * 119.99903 * 152.59432 * 7 6 5 10 10 N 1.31624 * 120.00070 * 159.34992 * 9 7 6 11 11 Si 1.86800 * 120.00077 * 339.35529 * 9 7 6 12 12 H 1.48494 * 109.47321 * 92.87851 * 11 9 7 13 13 H 1.48501 * 109.47194 * 212.88430 * 11 9 7 14 14 H 1.48509 * 109.46983 * 332.87654 * 11 9 7 15 15 C 1.46921 * 118.74178 * 306.38862 * 6 5 3 16 16 C 1.53190 * 108.89311 * 53.54201 * 15 6 5 17 17 C 1.53035 * 109.49604 * 184.83752 * 3 2 1 18 18 H 1.08996 * 109.46541 * 298.69133 * 17 3 2 19 19 N 1.46903 * 109.46110 * 58.66716 * 17 3 2 20 20 H 1.09004 * 109.46841 * 299.99982 * 1 2 3 21 21 H 1.09001 * 109.47198 * 59.99397 * 1 2 3 22 22 H 1.09002 * 109.47366 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46841 * 240.00018 * 2 1 3 24 24 H 1.08998 * 109.46805 * 120.00261 * 2 1 3 25 25 H 1.09004 * 109.58249 * 54.79604 * 5 3 2 26 26 H 1.08996 * 109.57976 * 294.37011 * 5 3 2 27 27 H 0.97001 * 119.99914 * 180.02562 * 10 9 7 28 28 H 1.08999 * 109.58764 * 173.40193 * 15 6 5 29 29 H 1.09004 * 109.58573 * 293.68132 * 15 6 5 30 30 H 1.08992 * 109.50042 * 65.38545 * 16 15 6 31 31 H 1.09002 * 109.50087 * 185.48915 * 16 15 6 32 32 H 1.00900 * 110.99967 * 179.97438 * 19 17 3 33 33 H 1.00907 * 110.99293 * 303.95144 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6351 2.1280 1.3089 6 7 2.2416 3.4656 1.3493 7 6 1.4695 4.5754 1.5672 8 1 0.4283 4.5736 1.2806 9 6 2.0252 5.7027 2.1565 10 7 1.4475 6.8759 2.0073 11 14 3.5931 5.5547 3.1611 12 1 4.7665 5.8123 2.2883 13 1 3.5695 6.5481 4.2647 14 1 3.6897 4.1860 3.7292 15 6 3.6922 3.5898 1.1522 16 6 4.0774 2.8872 -0.1534 17 6 3.5655 1.4448 -0.1217 18 1 3.9989 0.9269 0.7339 19 7 3.9588 0.7588 -1.3597 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.9908 1.5396 2.1547 26 1 0.5497 2.2174 1.3538 27 1 1.8360 7.6637 2.4188 28 1 3.9642 4.6437 1.0940 29 1 4.2157 3.1229 1.9866 30 1 3.6272 3.4124 -0.9957 31 1 5.1621 2.8883 -0.2610 32 1 4.9624 0.7473 -1.4636 33 1 3.5810 -0.1763 -1.3906 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147465685.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:30 Heat of formation + Delta-G solvation = 10.484512 kcal Electronic energy + Delta-G solvation = -13499.993658 eV Core-core repulsion = 11367.672994 eV Total energy + Delta-G solvation = -2132.320664 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.59716 -34.69960 -33.29190 -31.62146 -29.37937 -28.33496 -24.59049 -23.71833 -21.40665 -20.73890 -19.13344 -16.69105 -15.71137 -15.35715 -14.69650 -14.33820 -13.83868 -13.36964 -13.20535 -12.79399 -12.57424 -12.06302 -11.72406 -11.56833 -11.27752 -11.23293 -10.87585 -10.27812 -10.23179 -10.10259 -9.71185 -9.67297 -9.35364 -8.57865 -8.42509 -6.92920 -5.91177 -3.26241 3.34422 3.50199 3.53636 4.56372 4.75533 4.93717 5.16945 5.25965 5.29485 5.46941 5.62420 5.70277 5.88180 5.91109 6.02259 6.17011 6.24358 6.26147 6.36884 6.40657 6.47829 6.58352 6.67548 6.73672 6.86190 7.06903 7.43805 7.64864 8.00798 8.36990 8.98584 9.76411 10.14951 11.24980 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041889 B = 0.012394 C = 0.010552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.278557 B = 2258.671339 C = 2652.868495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.098 4.098 4 H 0.078 0.922 5 C 0.155 3.845 6 N -0.606 5.606 7 C -0.257 4.257 8 H 0.085 0.915 9 C 0.022 3.978 10 N -0.909 5.909 11 Si 0.883 3.117 12 H -0.289 1.289 13 H -0.304 1.304 14 H -0.272 1.272 15 C 0.126 3.874 16 C -0.126 4.126 17 C 0.103 3.897 18 H 0.025 0.975 19 N -0.849 5.849 20 H 0.059 0.941 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.019 0.981 26 H 0.066 0.934 27 H 0.262 0.738 28 H 0.073 0.927 29 H 0.021 0.979 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.333 0.667 33 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -12.941 -3.491 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.118 4.118 4 H 0.097 0.903 5 C 0.028 3.972 6 N -0.329 5.329 7 C -0.386 4.386 8 H 0.103 0.897 9 C -0.176 4.176 10 N -0.552 5.552 11 Si 0.714 3.286 12 H -0.217 1.217 13 H -0.232 1.232 14 H -0.197 1.197 15 C 0.000 4.000 16 C -0.165 4.165 17 C -0.008 4.008 18 H 0.043 0.957 19 N -0.379 5.379 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.264 -12.174 -3.801 13.165 hybrid contribution 1.470 -0.625 1.211 2.004 sum 4.733 -12.799 -2.591 13.890 Atomic orbital electron populations 1.21776 0.95863 1.00749 1.02405 1.21543 0.96161 0.97100 1.00794 1.21732 0.93944 0.95120 1.01034 0.90344 1.21008 0.97556 0.85712 0.92891 1.44351 1.02598 1.02608 1.83318 1.18934 0.95610 0.89902 1.34125 0.89713 1.25273 0.97836 0.95451 0.99086 1.69844 1.41548 0.98021 1.45828 0.86943 0.83818 0.77233 0.80644 1.21677 1.23189 1.19686 1.21328 0.85563 0.99504 0.93608 1.22056 0.98790 0.94991 1.00693 1.21257 0.95759 0.94651 0.89143 0.95672 1.58850 1.15906 1.23183 1.39959 0.92187 0.92716 0.93507 0.92368 0.92775 0.96339 0.91586 0.92826 0.90857 0.96070 0.90980 0.93207 0.85492 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 37.16 0.36 -1.57 16 2 C -0.12 -1.59 5.18 -26.73 -0.14 -1.73 16 3 C -0.10 -1.67 2.07 -90.50 -0.19 -1.86 16 4 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 5 C 0.15 3.13 5.41 -3.71 -0.02 3.11 16 6 N -0.61 -14.81 2.77 -172.32 -0.48 -15.29 16 7 C -0.26 -7.36 10.03 -15.06 -0.15 -7.51 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 10 N -0.91 -28.32 13.97 55.49 0.78 -27.54 16 11 Si 0.88 22.83 24.34 -169.99 -4.14 18.69 16 12 H -0.29 -7.22 6.62 56.52 0.37 -6.84 16 13 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 14 H -0.27 -6.92 6.64 56.52 0.38 -6.54 16 15 C 0.13 2.85 4.20 -3.71 -0.02 2.84 16 16 C -0.13 -2.36 5.67 -26.59 -0.15 -2.52 16 17 C 0.10 1.68 2.74 -67.65 -0.19 1.50 16 18 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 19 N -0.85 -11.53 9.21 -4.62 -0.04 -11.57 16 20 H 0.06 0.81 6.70 -51.93 -0.35 0.46 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.71 6.31 -51.93 -0.33 0.38 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 1.34 6.65 -51.93 -0.35 0.99 16 27 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 28 H 0.07 1.81 4.50 -51.93 -0.23 1.58 16 29 H 0.02 0.48 7.07 -51.93 -0.37 0.11 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.33 3.96 9.03 -39.29 -0.35 3.60 16 33 H 0.33 3.93 6.89 -39.29 -0.27 3.66 16 LS Contribution 249.50 15.07 3.76 3.76 Total: -1.00 -30.64 249.50 -5.94 -36.59 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.24 Total: 2.53 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.58 Total: -7.17 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.26 Total: -54.41 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.14 Total: 18.69 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.64 -5.94 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147465685.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.072 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds