Wall clock time and date at job start Mon Mar 30 2020 02:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47128 * 2 1 4 4 H 1.09002 * 109.50134 * 304.93620 * 3 2 1 5 5 C 1.53200 * 109.49917 * 65.00234 * 3 2 1 6 6 N 1.46923 * 108.77283 * 174.58448 * 5 3 2 7 7 C 1.36940 * 120.62634 * 126.41583 * 6 5 3 8 8 H 1.08001 * 120.00319 * 332.59199 * 7 6 5 9 9 C 1.38813 * 119.99903 * 152.59432 * 7 6 5 10 10 N 1.31624 * 120.00070 * 159.34992 * 9 7 6 11 11 Si 1.86800 * 120.00077 * 339.35529 * 9 7 6 12 12 H 1.48494 * 109.47321 * 92.87851 * 11 9 7 13 13 H 1.48501 * 109.47194 * 212.88430 * 11 9 7 14 14 H 1.48509 * 109.46983 * 332.87654 * 11 9 7 15 15 C 1.46921 * 118.74178 * 306.38862 * 6 5 3 16 16 C 1.53190 * 108.89311 * 53.54201 * 15 6 5 17 17 C 1.53035 * 109.49604 * 184.83752 * 3 2 1 18 18 H 1.08996 * 109.46541 * 298.69133 * 17 3 2 19 19 N 1.46903 * 109.46110 * 58.66716 * 17 3 2 20 20 H 1.09004 * 109.46841 * 299.99982 * 1 2 3 21 21 H 1.09001 * 109.47198 * 59.99397 * 1 2 3 22 22 H 1.09002 * 109.47366 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46841 * 240.00018 * 2 1 3 24 24 H 1.08998 * 109.46805 * 120.00261 * 2 1 3 25 25 H 1.09004 * 109.58249 * 54.79604 * 5 3 2 26 26 H 1.08996 * 109.57976 * 294.37011 * 5 3 2 27 27 H 0.97001 * 119.99914 * 180.02562 * 10 9 7 28 28 H 1.08999 * 109.58764 * 173.40193 * 15 6 5 29 29 H 1.09004 * 109.58573 * 293.68132 * 15 6 5 30 30 H 1.08992 * 109.50042 * 65.38545 * 16 15 6 31 31 H 1.09002 * 109.50087 * 185.48915 * 16 15 6 32 32 H 1.00900 * 110.99967 * 179.97438 * 19 17 3 33 33 H 1.00907 * 110.99293 * 303.95144 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6351 2.1280 1.3089 6 7 2.2416 3.4656 1.3493 7 6 1.4695 4.5754 1.5672 8 1 0.4283 4.5736 1.2806 9 6 2.0252 5.7027 2.1565 10 7 1.4475 6.8759 2.0073 11 14 3.5931 5.5547 3.1611 12 1 4.7665 5.8123 2.2883 13 1 3.5695 6.5481 4.2647 14 1 3.6897 4.1860 3.7292 15 6 3.6922 3.5898 1.1522 16 6 4.0774 2.8872 -0.1534 17 6 3.5655 1.4448 -0.1217 18 1 3.9989 0.9269 0.7339 19 7 3.9588 0.7588 -1.3597 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.9908 1.5396 2.1547 26 1 0.5497 2.2174 1.3538 27 1 1.8360 7.6637 2.4188 28 1 3.9642 4.6437 1.0940 29 1 4.2157 3.1229 1.9866 30 1 3.6272 3.4124 -0.9957 31 1 5.1621 2.8883 -0.2610 32 1 4.9624 0.7473 -1.4636 33 1 3.5810 -0.1763 -1.3906 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147465685.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:30 Heat of formation + Delta-G solvation = -12.177882 kcal Electronic energy + Delta-G solvation = -13500.976373 eV Core-core repulsion = 11367.672994 eV Total energy + Delta-G solvation = -2133.303379 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.09930 -36.40144 -34.54407 -33.68957 -30.94957 -29.79230 -26.39272 -25.19744 -23.14951 -22.13406 -20.58841 -18.75609 -17.37668 -16.76196 -16.20128 -15.90839 -15.31414 -15.17208 -14.60737 -14.27861 -14.25082 -13.60920 -13.47617 -13.05832 -12.83792 -12.62773 -12.49022 -12.13687 -11.76057 -11.65782 -11.47961 -11.30550 -11.01464 -10.66785 -9.52918 -8.94498 -8.17813 -5.49480 1.28280 1.39151 1.49009 2.40529 3.03275 3.32185 3.60613 3.85794 3.93095 4.10560 4.29961 4.39873 4.51107 4.54960 4.66150 4.72980 4.82247 4.90395 4.96268 5.02460 5.15368 5.21259 5.28117 5.39149 5.46352 5.61604 5.85331 6.11202 6.32611 6.71828 6.90708 7.61414 8.02239 9.02286 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041889 B = 0.012394 C = 0.010552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.278557 B = 2258.671339 C = 2652.868495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.090 4.090 4 H 0.051 0.949 5 C 0.150 3.850 6 N -0.621 5.621 7 C -0.250 4.250 8 H 0.049 0.951 9 C -0.037 4.037 10 N -0.958 5.958 11 Si 0.950 3.050 12 H -0.274 1.274 13 H -0.309 1.309 14 H -0.261 1.261 15 C 0.120 3.880 16 C -0.119 4.119 17 C 0.110 3.890 18 H 0.037 0.963 19 N -0.848 5.848 20 H 0.045 0.955 21 H 0.046 0.954 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.262 0.738 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.347 0.653 33 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 -15.580 -3.640 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.110 4.110 4 H 0.070 0.930 5 C 0.025 3.975 6 N -0.345 5.345 7 C -0.380 4.380 8 H 0.067 0.933 9 C -0.231 4.231 10 N -0.604 5.604 11 Si 0.779 3.221 12 H -0.201 1.201 13 H -0.238 1.238 14 H -0.186 1.186 15 C -0.005 4.005 16 C -0.159 4.159 17 C -0.001 4.001 18 H 0.055 0.945 19 N -0.381 5.381 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.161 0.839 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.117 -14.875 -3.972 16.224 hybrid contribution 0.821 0.159 1.186 1.451 sum 5.938 -14.715 -2.785 16.111 Atomic orbital electron populations 1.21779 0.95675 1.02044 1.01362 1.21497 0.96300 0.94491 1.02442 1.21573 0.94867 0.96853 0.97755 0.93048 1.21185 0.96929 0.84118 0.95243 1.44493 1.03361 1.02986 1.83681 1.18870 0.94732 0.91438 1.32939 0.93334 1.25927 1.01768 0.94991 1.00440 1.69978 1.44031 0.98847 1.47535 0.85857 0.80319 0.77303 0.78669 1.20097 1.23775 1.18569 1.21391 0.84341 0.98741 0.96046 1.21932 1.00461 0.96091 0.97412 1.21057 0.94811 0.93428 0.90850 0.94531 1.58687 1.17209 1.24064 1.38144 0.93582 0.93522 0.91013 0.90247 0.91431 0.94992 0.92713 0.92928 0.93327 0.94854 0.93235 0.90398 0.83910 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.67 71.98 0.70 -2.87 16 2 C -0.11 -2.59 5.18 30.59 0.16 -2.43 16 3 C -0.09 -2.90 2.07 -10.72 -0.02 -2.93 16 4 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 5 C 0.15 5.97 5.41 86.37 0.47 6.43 16 6 N -0.62 -30.31 2.77 -699.10 -1.94 -32.25 16 7 C -0.25 -14.72 10.03 84.03 0.84 -13.88 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 9 C -0.04 -2.21 5.23 84.86 0.44 -1.76 16 10 N -0.96 -61.66 13.97 21.65 0.30 -61.36 16 11 Si 0.95 47.61 24.34 68.60 1.67 49.28 16 12 H -0.27 -12.97 6.62 99.48 0.66 -12.32 16 13 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 14 H -0.26 -12.49 6.64 99.48 0.66 -11.83 16 15 C 0.12 5.25 4.20 86.36 0.36 5.61 16 16 C -0.12 -4.23 5.67 30.68 0.17 -4.05 16 17 C 0.11 3.25 2.74 44.95 0.12 3.37 16 18 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 19 N -0.85 -19.75 9.21 -168.51 -1.55 -21.30 16 20 H 0.05 1.20 6.70 -2.39 -0.02 1.18 16 21 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.08 1.59 6.31 -2.39 -0.02 1.57 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 2.25 6.65 -2.39 -0.02 2.23 16 27 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 28 H 0.05 2.35 4.50 -2.39 -0.01 2.34 16 29 H 0.03 1.39 7.07 -2.38 -0.02 1.37 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.35 6.73 9.03 -89.69 -0.81 5.92 16 33 H 0.35 6.61 6.89 -89.69 -0.62 5.99 16 Total: -1.00 -67.33 249.50 1.30 -66.03 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -0.43 Total: 12.11 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 3.25 Total: -12.51 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -3.19 Total: -114.91 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.67 Total: 49.28 kcal Total: -67.33 1.30 -66.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147465685.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.853 kcal (2) G-P(sol) polarization free energy of solvation -67.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds