Wall clock time and date at job start Mon Mar 30 2020 02:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.90702 * 2 1 4 4 C 1.53992 * 109.92111 * 121.30599 * 2 1 3 5 5 C 1.54595 * 105.13863 * 120.57653 * 4 2 1 6 6 H 1.08996 * 110.72898 * 263.60045 * 5 4 2 7 7 N 1.46909 * 110.72329 * 140.31925 * 5 4 2 8 8 C 1.46896 * 111.00138 * 160.04402 * 7 5 4 9 9 C 1.50705 * 109.47099 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99696 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99726 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00312 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47253 * 59.99508 * 13 11 9 15 15 H 1.48500 * 109.47123 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46872 * 300.00075 * 13 11 9 17 17 C 1.54937 * 102.92295 * 21.96311 * 5 4 2 18 18 N 1.47902 * 109.91941 * 238.89826 * 2 1 3 19 19 C 1.46906 * 111.00239 * 94.80316 * 18 2 1 20 20 H 1.09002 * 109.46915 * 179.64467 * 1 2 3 21 21 H 1.08991 * 109.46854 * 299.64789 * 1 2 3 22 22 H 1.08998 * 109.46880 * 59.65252 * 1 2 3 23 23 H 1.09004 * 110.30284 * 1.66597 * 4 2 1 24 24 H 1.08996 * 110.31234 * 239.49825 * 4 2 1 25 25 H 1.00898 * 110.99661 * 284.00108 * 7 5 4 26 26 H 1.09002 * 109.47003 * 300.00139 * 8 7 5 27 27 H 1.08995 * 109.47097 * 60.00282 * 8 7 5 28 28 H 0.97001 * 120.00292 * 180.02562 * 12 11 9 29 29 H 1.09003 * 110.66707 * 81.01719 * 17 5 4 30 30 H 1.08998 * 110.66657 * 203.98085 * 17 5 4 31 31 H 1.08996 * 109.47130 * 177.26969 * 19 18 2 32 32 H 1.09000 * 109.46656 * 297.27025 * 19 18 2 33 33 H 1.08996 * 109.47192 * 57.27065 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0547 -0.7523 1.2370 5 6 2.9059 -1.9128 0.6727 6 1 2.3215 -2.8316 0.6238 7 7 4.1180 -2.1084 1.4794 8 6 4.6783 -3.4503 1.2709 9 6 5.9173 -3.6138 2.1132 10 1 6.2544 -2.8022 2.7409 11 6 6.6202 -4.7994 2.0824 12 7 6.2094 -5.7878 1.3184 13 14 8.1556 -5.0023 3.1270 14 1 7.8058 -4.8297 4.5598 15 1 8.7227 -6.3583 2.9152 16 1 9.1590 -3.9799 2.7358 17 6 3.2682 -1.4171 -0.7498 18 7 2.0339 -0.7183 -1.1906 19 6 2.3212 0.2164 -2.2870 20 1 -0.3633 -1.0277 -0.0064 21 1 -0.3633 0.5083 0.8931 22 1 -0.3633 0.5192 -0.8868 23 1 1.2228 -1.1434 1.8229 24 1 2.6714 -0.0928 1.8475 25 1 4.8036 -1.3954 1.2805 26 1 3.9418 -4.2003 1.5592 27 1 4.9342 -3.5777 0.2191 28 1 6.7038 -6.6221 1.2970 29 1 4.1098 -0.7253 -0.7134 30 1 3.4918 -2.2588 -1.4052 31 1 2.7357 -0.3321 -3.1328 32 1 1.4000 0.7128 -2.5920 33 1 3.0411 0.9619 -1.9495 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148017853.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:52 Heat of formation + Delta-G solvation = -2.414401 kcal Electronic energy + Delta-G solvation = -12818.057128 eV Core-core repulsion = 10685.177125 eV Total energy + Delta-G solvation = -2132.880003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.07231 -34.89878 -32.52005 -31.69082 -29.52461 -26.18813 -25.76361 -23.97555 -21.68937 -20.49640 -19.68529 -16.49133 -15.60676 -15.33177 -14.63899 -14.41947 -13.75194 -13.26675 -13.18792 -12.71119 -12.38554 -12.22946 -12.03180 -11.47730 -11.27061 -11.06411 -10.99847 -10.83981 -10.64174 -10.51106 -10.20528 -9.84493 -9.17032 -8.48209 -8.32718 -7.28631 -6.02390 -4.04738 3.33956 3.37834 3.40942 4.11232 4.44058 4.84172 5.02005 5.17788 5.32910 5.34770 5.42763 5.53550 5.59760 5.68500 5.74994 5.86600 5.90498 6.03950 6.06095 6.21193 6.34139 6.48356 6.57100 7.03229 7.19835 7.29164 7.43886 7.78919 8.13570 8.38558 8.60981 9.04167 9.60118 11.08571 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.069220 B = 0.006838 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.407399 B = 4093.914052 C = 4226.138179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.059 3.941 3 H 0.047 0.953 4 C -0.118 4.118 5 C 0.088 3.912 6 H 0.085 0.915 7 N -0.680 5.680 8 C 0.194 3.806 9 C -0.517 4.517 10 H 0.061 0.939 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.007 3.993 18 N -0.518 5.518 19 C 0.018 3.982 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.328 0.672 26 H 0.028 0.972 27 H -0.012 1.012 28 H 0.262 0.738 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 10.799 -4.181 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.050 4.050 3 H 0.065 0.935 4 C -0.157 4.157 5 C -0.024 4.024 6 H 0.103 0.897 7 N -0.309 5.309 8 C 0.068 3.932 9 C -0.555 4.555 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.122 4.122 18 N -0.242 5.242 19 C -0.131 4.131 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.145 0.855 26 H 0.046 0.954 27 H 0.006 0.994 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.661 10.046 -3.855 13.813 hybrid contribution 1.878 0.487 -0.241 1.955 sum -6.783 10.534 -4.096 13.181 Atomic orbital electron populations 1.21738 0.94312 1.02300 1.00669 1.22436 0.96032 0.95936 0.90581 0.93511 1.22511 0.99610 0.97463 0.96074 1.22449 0.93716 0.97686 0.88576 0.89705 1.60744 1.07065 1.07190 1.55900 1.19579 0.94574 0.84213 0.94880 1.21158 1.09119 0.99671 1.25579 0.92075 1.24986 0.97969 0.95819 0.95750 1.69951 1.40034 1.04495 1.39195 0.86543 0.82880 0.77036 0.80819 1.20145 1.21321 1.20309 1.24048 0.90732 0.98194 0.99274 1.64627 1.27165 1.25915 1.06534 1.22485 1.00177 0.95198 0.95251 0.91881 0.92636 0.93284 0.91010 0.91054 0.85476 0.95352 0.99422 0.92836 0.93938 0.90180 0.91538 0.91748 0.95740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.32 37.16 0.35 -1.19 16 2 C 0.06 0.79 3.09 -66.65 -0.21 0.59 16 3 H 0.05 0.60 7.69 -51.93 -0.40 0.21 16 4 C -0.12 -1.79 6.31 -25.38 -0.16 -1.95 16 5 C 0.09 1.61 3.34 -65.85 -0.22 1.39 16 6 H 0.08 1.67 7.90 -51.93 -0.41 1.26 16 7 N -0.68 -14.70 6.28 -106.02 -0.67 -15.37 16 8 C 0.19 5.12 5.30 -4.98 -0.03 5.10 16 9 C -0.52 -14.76 9.32 -34.44 -0.32 -15.08 16 10 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 13 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.01 0.12 6.10 -1.90 -0.01 0.11 16 18 N -0.52 -7.64 5.18 -230.79 -1.20 -8.83 16 19 C 0.02 0.22 9.41 60.07 0.57 0.78 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 1.05 7.69 -51.93 -0.40 0.65 16 24 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 25 H 0.33 6.81 8.30 -39.29 -0.33 6.48 16 26 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 27 H -0.01 -0.33 8.13 -51.93 -0.42 -0.76 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.04 0.71 7.68 -51.93 -0.40 0.31 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.02 0.29 7.99 -51.93 -0.41 -0.13 16 LS Contribution 269.73 15.07 4.06 4.06 Total: -1.00 -29.60 269.73 -7.90 -37.51 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.69 Total: 0.85 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -0.13 Total: -8.73 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -1.13 Total: -50.47 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.60 -7.90 -37.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148017853.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.092 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds