Wall clock time and date at job start Mon Mar 30 2020 02:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.90702 * 2 1 4 4 C 1.53992 * 109.92111 * 121.30599 * 2 1 3 5 5 C 1.54595 * 105.13863 * 120.57653 * 4 2 1 6 6 H 1.08996 * 110.72898 * 263.60045 * 5 4 2 7 7 N 1.46909 * 110.72329 * 140.31925 * 5 4 2 8 8 C 1.46896 * 111.00138 * 160.04402 * 7 5 4 9 9 C 1.50705 * 109.47099 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99696 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99726 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00312 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47253 * 59.99508 * 13 11 9 15 15 H 1.48500 * 109.47123 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46872 * 300.00075 * 13 11 9 17 17 C 1.54937 * 102.92295 * 21.96311 * 5 4 2 18 18 N 1.47902 * 109.91941 * 238.89826 * 2 1 3 19 19 C 1.46906 * 111.00239 * 94.80316 * 18 2 1 20 20 H 1.09002 * 109.46915 * 179.64467 * 1 2 3 21 21 H 1.08991 * 109.46854 * 299.64789 * 1 2 3 22 22 H 1.08998 * 109.46880 * 59.65252 * 1 2 3 23 23 H 1.09004 * 110.30284 * 1.66597 * 4 2 1 24 24 H 1.08996 * 110.31234 * 239.49825 * 4 2 1 25 25 H 1.00898 * 110.99661 * 284.00108 * 7 5 4 26 26 H 1.09002 * 109.47003 * 300.00139 * 8 7 5 27 27 H 1.08995 * 109.47097 * 60.00282 * 8 7 5 28 28 H 0.97001 * 120.00292 * 180.02562 * 12 11 9 29 29 H 1.09003 * 110.66707 * 81.01719 * 17 5 4 30 30 H 1.08998 * 110.66657 * 203.98085 * 17 5 4 31 31 H 1.08996 * 109.47130 * 177.26969 * 19 18 2 32 32 H 1.09000 * 109.46656 * 297.27025 * 19 18 2 33 33 H 1.08996 * 109.47192 * 57.27065 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0547 -0.7523 1.2370 5 6 2.9059 -1.9128 0.6727 6 1 2.3215 -2.8316 0.6238 7 7 4.1180 -2.1084 1.4794 8 6 4.6783 -3.4503 1.2709 9 6 5.9173 -3.6138 2.1132 10 1 6.2544 -2.8022 2.7409 11 6 6.6202 -4.7994 2.0824 12 7 6.2094 -5.7878 1.3184 13 14 8.1556 -5.0023 3.1270 14 1 7.8058 -4.8297 4.5598 15 1 8.7227 -6.3583 2.9152 16 1 9.1590 -3.9799 2.7358 17 6 3.2682 -1.4171 -0.7498 18 7 2.0339 -0.7183 -1.1906 19 6 2.3212 0.2164 -2.2870 20 1 -0.3633 -1.0277 -0.0064 21 1 -0.3633 0.5083 0.8931 22 1 -0.3633 0.5192 -0.8868 23 1 1.2228 -1.1434 1.8229 24 1 2.6714 -0.0928 1.8475 25 1 4.8036 -1.3954 1.2805 26 1 3.9418 -4.2003 1.5592 27 1 4.9342 -3.5777 0.2191 28 1 6.7038 -6.6221 1.2970 29 1 4.1098 -0.7253 -0.7134 30 1 3.4918 -2.2588 -1.4052 31 1 2.7357 -0.3321 -3.1328 32 1 1.4000 0.7128 -2.5920 33 1 3.0411 0.9619 -1.9495 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148017853.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:52 Heat of formation + Delta-G solvation = -24.091102 kcal Electronic energy + Delta-G solvation = -12818.997100 eV Core-core repulsion = 10685.177125 eV Total energy + Delta-G solvation = -2133.819975 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.35097 -36.64645 -34.54272 -32.82809 -31.10095 -28.03663 -26.96785 -25.25723 -23.70640 -21.93639 -20.87584 -18.57657 -17.05985 -16.87109 -16.30351 -15.79939 -15.14233 -14.75324 -14.46089 -14.45070 -13.81364 -13.62971 -13.39561 -13.05558 -12.77495 -12.74039 -12.42043 -12.23635 -12.12613 -12.02380 -11.75167 -11.53136 -11.19933 -10.66601 -9.48639 -9.10342 -8.22749 -6.34725 1.41223 1.45016 1.53123 2.39743 2.93388 3.10435 3.54719 3.74060 3.84914 4.14267 4.17809 4.40973 4.48431 4.51521 4.54410 4.80267 4.82782 4.93231 4.94425 5.02121 5.05967 5.15852 5.21499 5.30928 5.44321 5.60237 5.85488 6.01785 6.11982 6.43301 6.69620 6.87333 7.36380 8.88646 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.069220 B = 0.006838 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.407399 B = 4093.914052 C = 4226.138179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.061 3.939 3 H 0.061 0.939 4 C -0.110 4.110 5 C 0.081 3.919 6 H 0.062 0.938 7 N -0.677 5.677 8 C 0.211 3.789 9 C -0.539 4.539 10 H 0.065 0.935 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.975 3.025 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.266 1.266 17 C 0.016 3.984 18 N -0.528 5.528 19 C 0.017 3.983 20 H 0.051 0.949 21 H 0.073 0.927 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.335 0.665 26 H -0.003 1.003 27 H -0.037 1.037 28 H 0.266 0.734 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 12.431 -3.773 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.047 4.047 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.031 4.031 6 H 0.081 0.919 7 N -0.306 5.306 8 C 0.083 3.917 9 C -0.577 4.577 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.799 3.201 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.190 1.190 17 C -0.114 4.114 18 N -0.253 5.253 19 C -0.132 4.132 20 H 0.070 0.930 21 H 0.092 0.908 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.153 0.847 26 H 0.015 0.985 27 H -0.019 1.019 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.638 11.710 -3.454 14.955 hybrid contribution 1.797 -0.003 -0.411 1.843 sum -6.841 11.707 -3.865 14.099 Atomic orbital electron populations 1.21713 0.92556 1.02057 1.02220 1.22503 0.97355 0.95981 0.88896 0.92080 1.22462 0.99146 0.96151 0.97083 1.22485 0.92455 0.98290 0.89837 0.91929 1.60637 1.07874 1.05034 1.57084 1.19192 0.93466 0.86040 0.93003 1.21533 1.09987 1.00170 1.26042 0.91673 1.25976 1.01515 0.95301 0.96932 1.70088 1.41616 1.05087 1.40637 0.85358 0.78471 0.77329 0.78963 1.19284 1.20766 1.19039 1.23798 0.91981 0.97914 0.97686 1.64639 1.25730 1.27234 1.07659 1.22563 1.01466 0.94857 0.94287 0.93021 0.90839 0.92020 0.90385 0.90731 0.84736 0.98502 1.01901 0.92573 0.93703 0.92170 0.91505 0.89674 0.95131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.32 71.98 0.67 -1.93 16 2 C 0.06 1.51 3.09 45.06 0.14 1.64 16 3 H 0.06 1.37 7.69 -2.39 -0.02 1.35 16 4 C -0.11 -3.20 6.31 31.47 0.20 -3.00 16 5 C 0.08 3.00 3.34 46.12 0.15 3.15 16 6 H 0.06 2.58 7.90 -2.39 -0.02 2.56 16 7 N -0.68 -29.78 6.28 -489.35 -3.08 -32.85 16 8 C 0.21 11.55 5.30 85.56 0.45 12.00 16 9 C -0.54 -31.20 9.32 25.60 0.24 -30.96 16 10 H 0.07 3.64 7.81 -2.91 -0.02 3.61 16 11 C 0.00 0.06 5.46 84.65 0.46 0.52 16 12 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 13 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 17 C 0.02 0.55 6.10 86.65 0.53 1.08 16 18 N -0.53 -14.83 5.18 -884.08 -4.58 -19.41 16 19 C 0.02 0.37 9.41 127.69 1.20 1.57 16 20 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.08 2.17 7.69 -2.38 -0.02 2.15 16 24 H 0.07 2.13 8.05 -2.39 -0.02 2.11 16 25 H 0.33 13.93 8.30 -89.70 -0.74 13.18 16 26 H 0.00 -0.19 8.09 -2.39 -0.02 -0.21 16 27 H -0.04 -2.15 8.13 -2.39 -0.02 -2.17 16 28 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.04 1.47 7.68 -2.39 -0.02 1.46 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 0.65 7.99 -2.39 -0.02 0.63 16 Total: -1.00 -63.60 269.73 -0.99 -64.58 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.32 Total: 13.97 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 4.05 Total: -15.92 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -7.37 Total: -109.22 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.60 -0.99 -64.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148017853.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.490 kcal (2) G-P(sol) polarization free energy of solvation -63.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds