Wall clock time and date at job start Mon Mar 30 2020 02:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.90539 * 2 1 4 4 C 1.53988 * 109.91864 * 238.90100 * 2 1 3 5 5 C 1.54593 * 105.13853 * 239.22282 * 4 2 1 6 6 H 1.09001 * 110.73014 * 96.40304 * 5 4 2 7 7 N 1.46903 * 110.87670 * 219.61098 * 5 4 2 8 8 C 1.46906 * 110.99985 * 200.03983 * 7 5 4 9 9 C 1.50698 * 109.47144 * 180.02562 * 8 7 5 10 10 H 1.08009 * 119.99773 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00364 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99701 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00262 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47195 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47072 * 120.00342 * 13 11 9 16 16 H 1.48502 * 109.47183 * 240.00172 * 13 11 9 17 17 C 1.54936 * 102.92368 * 338.04121 * 5 4 2 18 18 N 1.48064 * 110.15825 * 121.05867 * 2 1 3 19 19 C 1.46902 * 111.16437 * 265.17176 * 18 2 1 20 20 H 1.09000 * 109.47188 * 181.09812 * 1 2 3 21 21 H 1.08991 * 109.47308 * 301.10239 * 1 2 3 22 22 H 1.09004 * 109.46940 * 61.10527 * 1 2 3 23 23 H 1.09005 * 110.31083 * 120.30603 * 4 2 1 24 24 H 1.08997 * 110.31160 * 358.13786 * 4 2 1 25 25 H 1.00895 * 111.00149 * 323.99846 * 7 5 4 26 26 H 1.08996 * 109.47214 * 300.00193 * 8 7 5 27 27 H 1.09004 * 109.46855 * 60.00562 * 8 7 5 28 28 H 0.97001 * 120.00378 * 179.97438 * 12 11 9 29 29 H 1.09002 * 110.66947 * 155.84927 * 17 5 4 30 30 H 1.09001 * 110.66952 * 278.81668 * 17 5 4 31 31 H 1.08995 * 109.46825 * 302.48131 * 19 18 2 32 32 H 1.08996 * 109.46826 * 62.47988 * 19 18 2 33 33 H 1.08994 * 109.46848 * 182.47652 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7478 -1.2397 5 6 2.9101 -1.9073 -0.6797 6 1 2.3284 -2.8279 -0.6321 7 7 4.1216 -2.1016 -1.4876 8 6 4.6820 -3.4439 -1.2816 9 6 5.9210 -3.6056 -2.1241 10 1 6.2586 -2.7924 -2.7496 11 6 6.6236 -4.7916 -2.0964 12 7 6.2122 -5.7819 -1.3352 13 14 8.1598 -4.9918 -3.1402 14 1 8.4082 -3.7406 -3.9005 15 1 9.3223 -5.2752 -2.2607 16 1 7.9704 -6.1186 -4.0887 17 6 3.2734 -1.4140 0.7434 18 7 2.0403 -0.7171 1.1907 19 6 2.3313 0.2159 2.2874 20 1 -0.3633 -1.0275 0.0197 21 1 -0.3633 0.5308 0.8798 22 1 -0.3633 0.4966 -0.8998 23 1 2.6685 -0.0850 -1.8497 24 1 1.2230 -1.1398 -1.8252 25 1 3.9353 -1.9335 -2.4648 26 1 4.9386 -3.5731 -0.2302 27 1 3.9453 -4.1934 -1.5707 28 1 6.7062 -6.6165 -1.3159 29 1 3.4975 -2.2569 1.3972 30 1 4.1148 -0.7221 0.7077 31 1 3.0525 0.9600 1.9496 32 1 1.4117 0.7142 2.5941 33 1 2.7454 -0.3343 3.1322 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148018054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:54 Heat of formation + Delta-G solvation = -2.262249 kcal Electronic energy + Delta-G solvation = -12807.691709 eV Core-core repulsion = 10674.818304 eV Total energy + Delta-G solvation = -2132.873405 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.97721 -34.88826 -32.52465 -31.65389 -29.54899 -26.29164 -25.70719 -23.98189 -21.74397 -20.03884 -19.84884 -16.42934 -15.63776 -15.16167 -14.58171 -14.45555 -13.94869 -13.53506 -13.09814 -12.63146 -12.34674 -12.18555 -12.04211 -11.50379 -11.25752 -11.06578 -10.88006 -10.80052 -10.57047 -10.47126 -10.23150 -9.80809 -9.13373 -8.48328 -8.24225 -7.32328 -6.02527 -4.04625 3.31324 3.38481 3.43537 4.15337 4.44346 4.86993 4.96126 5.20009 5.29937 5.33522 5.47142 5.57194 5.58206 5.74068 5.82494 5.89973 5.94029 6.07993 6.12952 6.24614 6.35082 6.47275 6.53617 7.05466 7.26213 7.32657 7.43566 7.80103 8.14174 8.40008 8.61845 9.05026 9.60368 11.08627 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068789 B = 0.006841 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.946304 B = 4092.198026 C = 4231.087085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.064 3.936 3 H 0.048 0.952 4 C -0.129 4.129 5 C 0.083 3.917 6 H 0.048 0.952 7 N -0.683 5.683 8 C 0.194 3.806 9 C -0.514 4.514 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.899 3.101 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.049 3.951 18 N -0.523 5.523 19 C 0.020 3.980 20 H 0.061 0.939 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.331 0.669 26 H 0.028 0.972 27 H -0.013 1.013 28 H 0.261 0.739 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.063 0.937 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.887 10.431 2.963 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.045 4.045 3 H 0.066 0.934 4 C -0.167 4.167 5 C -0.028 4.028 6 H 0.066 0.934 7 N -0.315 5.315 8 C 0.067 3.933 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.537 5.537 13 Si 0.727 3.273 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.079 4.079 18 N -0.248 5.248 19 C -0.129 4.129 20 H 0.080 0.920 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.148 0.852 26 H 0.047 0.953 27 H 0.005 0.995 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.807 10.178 3.687 13.955 hybrid contribution 0.857 -0.214 -1.164 1.461 sum -7.950 9.964 2.523 12.994 Atomic orbital electron populations 1.21746 0.94392 1.02242 1.00708 1.22340 0.95777 0.96002 0.90352 0.93366 1.22651 0.99370 0.97830 0.96871 1.22305 0.90966 0.96118 0.93418 0.93393 1.60706 1.26033 1.33597 1.11129 1.19600 0.93839 0.82301 0.97553 1.21232 1.09637 0.98986 1.25434 0.91952 1.24996 0.97978 0.95804 0.95835 1.69975 1.39953 1.04400 1.39363 0.86432 0.82842 0.78004 0.80068 1.19681 1.20996 1.21082 1.23197 0.90381 0.98217 0.96098 1.64655 1.27625 1.25973 1.06535 1.22460 1.00089 0.95226 0.95161 0.91968 0.93146 0.92711 0.90799 0.91374 0.85207 0.95345 0.99506 0.92958 0.90417 0.92794 0.95599 0.91866 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.33 37.16 0.35 -1.19 16 2 C 0.06 0.88 3.09 -66.55 -0.21 0.67 16 3 H 0.05 0.63 7.70 -51.93 -0.40 0.23 16 4 C -0.13 -1.92 6.08 -25.38 -0.15 -2.08 16 5 C 0.08 1.55 3.35 -65.85 -0.22 1.33 16 6 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 7 N -0.68 -14.86 6.31 -106.02 -0.67 -15.53 16 8 C 0.19 5.15 5.30 -4.97 -0.03 5.12 16 9 C -0.51 -14.72 9.32 -34.44 -0.32 -15.04 16 10 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 13 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 17 C 0.05 0.87 6.17 -1.90 -0.01 0.86 16 18 N -0.52 -7.91 5.20 -230.65 -1.20 -9.11 16 19 C 0.02 0.25 9.42 60.07 0.57 0.81 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 1.08 8.01 -51.93 -0.42 0.67 16 24 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 25 H 0.33 6.83 8.46 -39.29 -0.33 6.49 16 26 H 0.03 0.81 8.13 -51.93 -0.42 0.39 16 27 H -0.01 -0.36 8.09 -51.93 -0.42 -0.78 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.05 0.99 7.99 -51.93 -0.42 0.58 16 31 H 0.03 0.32 8.00 -51.93 -0.42 -0.10 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 270.09 15.07 4.07 4.07 Total: -1.00 -29.92 270.09 -7.92 -37.84 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.71 Total: 0.32 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -0.12 Total: -8.02 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -1.13 Total: -51.00 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.92 -7.92 -37.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148018054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.573 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds