Wall clock time and date at job start Mon Mar 30 2020 02:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46892 * 111.00245 * 2 1 4 4 H 1.08995 * 110.35712 * 327.13831 * 3 2 1 5 5 C 1.54598 * 110.30716 * 89.28624 * 3 2 1 6 6 C 1.54941 * 102.92305 * 140.87289 * 5 3 2 7 7 N 1.48537 * 103.22540 * 322.58295 * 6 5 3 8 8 C 1.46901 * 110.99979 * 159.71859 * 7 6 5 9 9 H 1.09002 * 109.47401 * 297.60407 * 8 7 6 10 10 C 1.53002 * 109.46860 * 177.60459 * 8 7 6 11 11 C 1.50701 * 109.46921 * 57.60379 * 8 7 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 8 7 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 8 7 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.47903 * 105.81847 * 39.20576 * 7 6 5 20 20 H 1.09001 * 109.46842 * 59.99579 * 1 2 3 21 21 H 1.09003 * 109.47481 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46681 * 300.00590 * 1 2 3 23 23 H 1.00903 * 110.99542 * 236.04434 * 2 1 3 24 24 H 1.09006 * 110.72064 * 259.22612 * 5 3 2 25 25 H 1.08991 * 110.72580 * 22.51175 * 5 3 2 26 26 H 1.08997 * 110.67017 * 204.14617 * 6 5 3 27 27 H 1.09006 * 110.66972 * 81.01323 * 6 5 3 28 28 H 1.09000 * 109.46986 * 180.02562 * 10 8 7 29 29 H 1.09002 * 109.47075 * 299.99593 * 10 8 7 30 30 H 1.08996 * 109.47407 * 60.00550 * 10 8 7 31 31 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 32 32 H 1.09005 * 109.91351 * 94.02413 * 19 7 6 33 33 H 1.09002 * 109.91672 * 215.11633 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.3301 2.0329 -0.5545 5 6 2.1709 1.8787 1.4498 6 6 3.4984 2.6748 1.3801 7 7 4.3292 1.8692 0.4488 8 6 5.4175 2.6767 -0.1184 9 1 4.9964 3.4959 -0.7013 10 6 6.2847 1.7996 -1.0237 11 6 6.2619 3.2362 0.9974 12 1 6.0150 3.0139 2.0251 13 6 7.3502 4.0312 0.7063 14 7 7.6510 4.3014 -0.5451 15 14 8.3972 4.7242 2.0893 16 1 7.8521 4.2751 3.3956 17 1 9.7935 4.2400 1.9434 18 1 8.3788 6.2078 2.0284 19 6 3.4090 1.4011 -0.6103 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8306 -0.5262 -0.7814 24 1 1.3446 2.5308 1.7328 25 1 2.2587 1.0424 2.1431 26 1 3.9660 2.7300 2.3631 27 1 3.3275 3.6733 0.9775 28 1 7.0925 2.3986 -1.4442 29 1 6.7058 0.9805 -0.4408 30 1 5.6740 1.3949 -1.8307 31 1 8.4165 4.8610 -0.7499 32 1 3.4344 2.0896 -1.4550 33 1 3.6968 0.4019 -0.9371 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150186050.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:15 Heat of formation + Delta-G solvation = -14.541388 kcal Electronic energy + Delta-G solvation = -13148.465037 eV Core-core repulsion = 11015.059169 eV Total energy + Delta-G solvation = -2133.405869 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.10429 -36.79226 -34.85507 -32.50492 -29.73731 -28.95046 -27.14654 -25.15054 -23.24015 -21.58754 -20.89444 -18.45234 -17.26460 -16.68273 -16.30113 -16.05810 -14.96328 -14.80094 -14.67105 -14.25667 -13.55586 -13.31479 -13.16843 -12.92092 -12.77083 -12.55679 -12.25397 -12.18015 -12.02163 -11.85185 -11.68131 -11.58042 -10.90291 -10.54769 -9.38161 -9.02035 -8.13141 -6.25134 1.40632 1.42364 1.54713 2.41828 3.15086 3.29702 3.42367 3.72003 3.94367 4.28882 4.48008 4.54315 4.61308 4.70890 4.75627 4.84837 4.91168 4.95677 5.01095 5.06057 5.07680 5.21497 5.32774 5.45585 5.70883 5.73726 6.11800 6.22316 6.34127 6.49178 6.65455 6.89425 7.44474 8.93496 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.066006 B = 0.008600 C = 0.007904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.104861 B = 3255.113373 C = 3541.810471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.691 5.691 3 C 0.085 3.915 4 H 0.053 0.947 5 C -0.101 4.101 6 C 0.050 3.950 7 N -0.519 5.519 8 C 0.207 3.793 9 H -0.036 1.036 10 C -0.118 4.118 11 C -0.519 4.519 12 H 0.056 0.944 13 C 0.010 3.990 14 N -0.922 5.922 15 Si 0.962 3.038 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.037 3.963 20 H 0.025 0.975 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.346 0.654 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.021 0.979 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.024 0.976 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 -5.338 0.701 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.323 5.323 3 C -0.025 4.025 4 H 0.071 0.929 5 C -0.140 4.140 6 C -0.078 4.078 7 N -0.244 5.244 8 C 0.100 3.900 9 H -0.019 1.019 10 C -0.176 4.176 11 C -0.558 4.558 12 H 0.075 0.925 13 C -0.189 4.189 14 N -0.562 5.562 15 Si 0.788 3.212 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.092 4.092 20 H 0.044 0.956 21 H 0.100 0.900 22 H 0.082 0.918 23 H 0.166 0.834 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.173 -5.755 1.532 12.661 hybrid contribution 0.383 1.577 -1.018 1.916 sum -10.790 -4.177 0.513 11.582 Atomic orbital electron populations 1.22284 0.86601 1.02685 1.00504 1.60511 1.08807 1.12582 1.50410 1.22316 0.93761 0.90096 0.96365 0.92866 1.22523 0.95642 0.99331 0.96495 1.22960 0.93094 0.94420 0.97349 1.64764 1.08763 1.36391 1.14491 1.19258 0.88821 0.88895 0.93038 1.01869 1.21591 1.00268 0.98456 0.97330 1.21434 1.11740 1.29449 0.93163 0.92537 1.25746 0.98592 0.96593 0.97943 1.70026 1.28681 1.38556 1.18905 0.85440 0.78436 0.77868 0.79496 1.19194 1.20474 1.20536 1.23015 0.92115 1.00347 0.93702 0.95628 0.90016 0.91788 0.83447 0.90067 0.90303 0.91581 0.96019 0.92122 0.95077 0.95468 0.92883 0.95718 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.55 127.69 1.35 1.89 16 2 N -0.69 -17.28 6.65 -510.04 -3.39 -20.67 16 3 C 0.09 2.52 3.33 45.80 0.15 2.68 16 4 H 0.05 1.49 7.82 -2.39 -0.02 1.47 16 5 C -0.10 -3.15 6.76 31.80 0.21 -2.94 16 6 C 0.05 2.03 5.69 86.65 0.49 2.52 16 7 N -0.52 -23.31 5.10 -862.18 -4.40 -27.71 16 8 C 0.21 10.99 1.77 44.17 0.08 11.06 16 9 H -0.04 -2.12 7.96 -2.39 -0.02 -2.14 16 10 C -0.12 -6.03 8.95 71.98 0.64 -5.39 16 11 C -0.52 -29.51 8.06 25.60 0.21 -29.30 16 12 H 0.06 3.21 6.81 -2.91 -0.02 3.19 16 13 C 0.01 0.55 5.30 84.66 0.45 0.99 16 14 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 15 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 C 0.04 1.36 5.24 86.45 0.45 1.82 16 20 H 0.03 0.45 8.07 -2.39 -0.02 0.43 16 21 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.35 7.95 8.10 -89.69 -0.73 7.23 16 24 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 25 H 0.08 2.50 8.06 -2.39 -0.02 2.48 16 26 H 0.07 2.78 7.32 -2.39 -0.02 2.77 16 27 H 0.02 0.92 8.02 -2.38 -0.02 0.90 16 28 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 29 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 1.21 7.35 -2.39 -0.02 1.19 16 31 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.02 0.96 7.65 -2.38 -0.02 0.94 16 33 H 0.08 2.74 7.48 -2.39 -0.02 2.73 16 Total: -1.00 -62.00 261.17 -1.13 -63.13 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.35 Total: 9.26 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.04 Total: -16.67 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -7.54 Total: -102.21 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -62.00 -1.13 -63.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150186050.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.589 kcal (2) G-P(sol) polarization free energy of solvation -61.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds