Wall clock time and date at job start Mon Mar 30 2020 02:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47253 * 2 1 4 4 N 1.46901 * 109.47130 * 239.99552 * 2 1 3 5 5 C 1.53005 * 109.46862 * 119.99956 * 2 1 3 6 6 H 1.08995 * 110.78365 * 59.84083 * 5 2 1 7 7 C 1.54597 * 110.72305 * 183.09019 * 5 2 1 8 8 C 1.53989 * 105.13786 * 140.31548 * 7 5 2 9 9 N 1.47898 * 107.06096 * 1.22519 * 8 7 5 10 10 C 1.46902 * 110.99842 * 214.15721 * 9 8 7 11 11 C 1.50706 * 109.47020 * 175.80267 * 10 9 8 12 12 H 1.08003 * 119.99853 * 5.05705 * 11 10 9 13 13 C 1.37876 * 120.00085 * 185.05431 * 11 10 9 14 14 N 1.31507 * 119.99892 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99817 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47242 * 60.00726 * 15 13 11 17 17 H 1.48499 * 109.46983 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47379 * 300.00409 * 15 13 11 19 19 C 1.48528 * 105.81925 * 334.67120 * 9 8 7 20 20 H 1.09000 * 109.47011 * 300.00055 * 1 2 3 21 21 H 1.08992 * 109.47000 * 59.99797 * 1 2 3 22 22 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 23 23 H 1.00892 * 110.99919 * 183.26894 * 4 2 1 24 24 H 1.00896 * 110.99828 * 307.23119 * 4 2 1 25 25 H 1.09003 * 110.30445 * 21.39759 * 7 5 2 26 26 H 1.09005 * 110.39241 * 259.27654 * 7 5 2 27 27 H 1.09002 * 109.91780 * 241.86875 * 8 7 5 28 28 H 1.09002 * 109.91595 * 120.58094 * 8 7 5 29 29 H 1.09000 * 109.47111 * 295.79546 * 10 9 8 30 30 H 1.08995 * 109.47584 * 55.80071 * 10 9 8 31 31 H 0.97002 * 120.00107 * 179.97438 * 14 13 11 32 32 H 1.08998 * 110.66980 * 157.64459 * 19 9 8 33 33 H 1.09007 * 110.66872 * 280.76777 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0400 -0.7213 1.2493 6 1 1.6862 -1.7519 1.2723 7 6 3.5836 -0.6710 1.3182 8 6 3.9124 -0.4363 2.8041 9 7 2.6253 -0.3893 3.5312 10 6 2.6881 0.5583 4.6520 11 6 1.3328 0.6560 5.3037 12 1 0.5288 0.0133 4.9767 13 6 1.1193 1.5658 6.3174 14 7 2.0982 2.3486 6.7153 15 14 -0.5609 1.6873 7.1247 16 1 -0.9121 0.3803 7.7360 17 1 -0.5296 2.7341 8.1775 18 1 -1.5767 2.0445 6.1022 19 6 1.6112 0.0343 2.5321 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.0269 -0.7528 -1.1963 24 1 1.6029 -1.6075 -1.2840 25 1 3.9627 0.1519 0.7122 26 1 4.0098 -1.6160 0.9811 27 1 4.4406 0.5098 2.9226 28 1 4.5233 -1.2556 3.1832 29 1 3.4181 0.2093 5.3823 30 1 2.9849 1.5396 4.2820 31 1 1.9479 2.9890 7.4282 32 1 0.6127 -0.2723 2.8436 33 1 1.6523 1.1123 2.3755 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157387377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:50 Heat of formation + Delta-G solvation = -11.697411 kcal Electronic energy + Delta-G solvation = -13050.019055 eV Core-core repulsion = 10916.736511 eV Total energy + Delta-G solvation = -2133.282544 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.79952 -35.49608 -32.84167 -30.41632 -29.48013 -27.33047 -26.24674 -22.94086 -21.50014 -19.95210 -19.65347 -16.51788 -15.82783 -15.29455 -14.95533 -14.33090 -14.11992 -13.13363 -12.90814 -12.78747 -12.40835 -11.85583 -11.81158 -11.49358 -11.08537 -11.01381 -10.71045 -10.65591 -10.48357 -10.38470 -10.17920 -9.85952 -9.13985 -8.58266 -8.45845 -7.30919 -6.04367 -4.06237 3.32307 3.36301 3.39214 4.41592 4.61747 4.82830 4.99465 5.18648 5.31598 5.34414 5.53192 5.57671 5.66227 5.86006 5.98857 6.08674 6.12116 6.27803 6.33889 6.35153 6.51967 6.67138 6.72225 7.17919 7.22441 7.36164 7.48013 7.75645 7.99495 8.18744 8.51424 9.01824 9.58482 11.06916 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044217 B = 0.009069 C = 0.007870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.093247 B = 3086.533168 C = 3556.758162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.095 3.905 3 H 0.078 0.922 4 N -0.845 5.845 5 C -0.130 4.130 6 H 0.074 0.926 7 C -0.125 4.125 8 C 0.034 3.966 9 N -0.519 5.519 10 C 0.184 3.816 11 C -0.512 4.512 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.066 3.934 20 H 0.067 0.933 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.338 0.662 24 H 0.336 0.664 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.036 0.964 28 H 0.065 0.935 29 H 0.027 0.973 30 H -0.004 1.004 31 H 0.262 0.738 32 H 0.076 0.924 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 -4.825 -11.668 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 H 0.097 0.903 4 N -0.373 5.373 5 C -0.151 4.151 6 H 0.093 0.907 7 C -0.163 4.163 8 C -0.094 4.094 9 N -0.244 5.244 10 C 0.058 3.942 11 C -0.550 4.550 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.063 4.063 20 H 0.086 0.914 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.151 0.849 24 H 0.147 0.853 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.014 0.986 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.398 -4.566 -11.705 12.570 hybrid contribution -0.151 0.262 1.032 1.075 sum -0.549 -4.304 -10.672 11.521 Atomic orbital electron populations 1.21829 0.94492 1.01836 1.02214 1.21482 0.95467 0.97902 0.86867 0.90341 1.59075 1.12045 1.25342 1.40888 1.23022 0.95289 1.00334 0.96498 0.90735 1.22436 0.95847 1.00768 0.97278 1.22785 0.94361 0.99987 0.92303 1.64836 1.02185 1.49631 1.07742 1.19883 0.97879 0.88423 0.88000 1.21130 0.96519 1.19303 1.18084 0.91986 1.24995 0.97117 0.95527 0.96894 1.69948 1.31802 1.22768 1.29255 0.86562 0.84099 0.77750 0.79032 1.20131 1.21290 1.20225 1.22925 0.97461 0.96809 0.89134 0.91445 0.92389 0.92971 0.84929 0.85254 0.92103 0.92157 0.94582 0.91671 0.95446 0.98630 0.92833 0.90570 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.24 37.16 0.34 -1.50 16 2 C 0.09 1.25 2.84 -67.71 -0.19 1.05 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 4 N -0.85 -9.55 9.28 -4.66 -0.04 -9.60 16 5 C -0.13 -1.97 2.81 -88.76 -0.25 -2.22 16 6 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 7 C -0.13 -1.83 5.60 -25.38 -0.14 -1.97 16 8 C 0.03 0.64 6.70 -2.76 -0.02 0.62 16 9 N -0.52 -11.59 5.34 -231.90 -1.24 -12.83 16 10 C 0.18 4.93 4.60 -4.97 -0.02 4.91 16 11 C -0.51 -14.60 8.55 -34.44 -0.29 -14.89 16 12 H 0.06 1.74 7.03 -52.48 -0.37 1.37 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 15 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.07 1.29 4.20 -1.90 -0.01 1.28 16 20 H 0.07 0.91 7.31 -51.93 -0.38 0.53 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.34 3.52 8.01 -39.30 -0.31 3.21 16 24 H 0.34 3.39 8.95 -39.29 -0.35 3.04 16 25 H 0.06 0.83 7.74 -51.93 -0.40 0.43 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.69 7.67 -51.93 -0.40 0.30 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.00 -0.12 7.97 -51.93 -0.41 -0.53 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.08 1.56 7.34 -51.93 -0.38 1.18 16 33 H 0.04 0.82 7.92 -51.93 -0.41 0.41 16 LS Contribution 263.99 15.07 3.98 3.98 Total: -1.00 -29.90 263.99 -7.79 -37.69 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.52 Total: 1.49 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -0.68 Total: -11.21 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.55 Total: -48.70 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.90 -7.79 -37.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157387377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.992 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds