Wall clock time and date at job start Mon Mar 30 2020 02:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47253 * 2 1 4 4 N 1.46901 * 109.47130 * 239.99552 * 2 1 3 5 5 C 1.53005 * 109.46862 * 119.99956 * 2 1 3 6 6 H 1.08995 * 110.78365 * 59.84083 * 5 2 1 7 7 C 1.54597 * 110.72305 * 183.09019 * 5 2 1 8 8 C 1.53989 * 105.13786 * 140.31548 * 7 5 2 9 9 N 1.47898 * 107.06096 * 1.22519 * 8 7 5 10 10 C 1.46902 * 110.99842 * 214.15721 * 9 8 7 11 11 C 1.50706 * 109.47020 * 175.80267 * 10 9 8 12 12 H 1.08003 * 119.99853 * 5.05705 * 11 10 9 13 13 C 1.37876 * 120.00085 * 185.05431 * 11 10 9 14 14 N 1.31507 * 119.99892 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99817 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47242 * 60.00726 * 15 13 11 17 17 H 1.48499 * 109.46983 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47379 * 300.00409 * 15 13 11 19 19 C 1.48528 * 105.81925 * 334.67120 * 9 8 7 20 20 H 1.09000 * 109.47011 * 300.00055 * 1 2 3 21 21 H 1.08992 * 109.47000 * 59.99797 * 1 2 3 22 22 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 23 23 H 1.00892 * 110.99919 * 183.26894 * 4 2 1 24 24 H 1.00896 * 110.99828 * 307.23119 * 4 2 1 25 25 H 1.09003 * 110.30445 * 21.39759 * 7 5 2 26 26 H 1.09005 * 110.39241 * 259.27654 * 7 5 2 27 27 H 1.09002 * 109.91780 * 241.86875 * 8 7 5 28 28 H 1.09002 * 109.91595 * 120.58094 * 8 7 5 29 29 H 1.09000 * 109.47111 * 295.79546 * 10 9 8 30 30 H 1.08995 * 109.47584 * 55.80071 * 10 9 8 31 31 H 0.97002 * 120.00107 * 179.97438 * 14 13 11 32 32 H 1.08998 * 110.66980 * 157.64459 * 19 9 8 33 33 H 1.09007 * 110.66872 * 280.76777 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0400 -0.7213 1.2493 6 1 1.6862 -1.7519 1.2723 7 6 3.5836 -0.6710 1.3182 8 6 3.9124 -0.4363 2.8041 9 7 2.6253 -0.3893 3.5312 10 6 2.6881 0.5583 4.6520 11 6 1.3328 0.6560 5.3037 12 1 0.5288 0.0133 4.9767 13 6 1.1193 1.5658 6.3174 14 7 2.0982 2.3486 6.7153 15 14 -0.5609 1.6873 7.1247 16 1 -0.9121 0.3803 7.7360 17 1 -0.5296 2.7341 8.1775 18 1 -1.5767 2.0445 6.1022 19 6 1.6112 0.0343 2.5321 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.0269 -0.7528 -1.1963 24 1 1.6029 -1.6075 -1.2840 25 1 3.9627 0.1519 0.7122 26 1 4.0098 -1.6160 0.9811 27 1 4.4406 0.5098 2.9226 28 1 4.5233 -1.2556 3.1832 29 1 3.4181 0.2093 5.3823 30 1 2.9849 1.5396 4.2820 31 1 1.9479 2.9890 7.4282 32 1 0.6127 -0.2723 2.8436 33 1 1.6523 1.1123 2.3755 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157387377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:50 Heat of formation + Delta-G solvation = -34.524140 kcal Electronic energy + Delta-G solvation = -13051.008896 eV Core-core repulsion = 10916.736511 eV Total energy + Delta-G solvation = -2134.272386 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.23875 -36.87193 -34.89572 -32.08804 -30.62633 -28.63268 -28.23102 -24.76025 -22.87766 -21.64219 -20.89668 -18.56353 -17.06162 -16.99563 -16.38652 -16.02785 -15.40048 -14.75527 -14.42483 -14.28466 -14.08397 -13.53948 -13.06025 -12.96082 -12.88543 -12.55688 -12.41209 -12.13600 -12.10894 -11.85041 -11.56154 -11.50206 -11.23133 -10.66846 -9.57841 -9.14711 -8.25805 -6.37017 1.38047 1.41700 1.49786 2.36990 3.07298 3.33057 3.55655 3.74737 3.95025 3.99565 4.28039 4.39265 4.46194 4.58147 4.72332 4.78435 4.86257 4.99433 5.01485 5.03146 5.16381 5.17828 5.27072 5.34709 5.42532 5.58563 5.94339 6.20447 6.27829 6.51024 6.67242 6.79612 7.33624 8.86116 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044217 B = 0.009069 C = 0.007870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.093247 B = 3086.533168 C = 3556.758162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.104 3.896 3 H 0.066 0.934 4 N -0.840 5.840 5 C -0.114 4.114 6 H 0.084 0.916 7 C -0.114 4.114 8 C 0.027 3.973 9 N -0.532 5.532 10 C 0.199 3.801 11 C -0.531 4.531 12 H 0.063 0.937 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.971 3.029 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.265 1.265 19 C 0.065 3.935 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.346 0.654 24 H 0.346 0.654 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.021 0.979 28 H 0.074 0.926 29 H -0.002 1.002 30 H -0.035 1.035 31 H 0.266 0.734 32 H 0.063 0.937 33 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 -5.890 -13.065 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.009 4.009 3 H 0.084 0.916 4 N -0.369 5.369 5 C -0.135 4.135 6 H 0.102 0.898 7 C -0.151 4.151 8 C -0.101 4.101 9 N -0.256 5.256 10 C 0.073 3.927 11 C -0.569 4.569 12 H 0.081 0.919 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.795 3.205 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.064 4.064 20 H 0.069 0.931 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.160 0.840 24 H 0.160 0.840 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.039 0.961 28 H 0.093 0.907 29 H 0.016 0.984 30 H -0.018 1.018 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -1.302 -5.654 -13.132 14.356 hybrid contribution 0.192 0.576 1.448 1.571 sum -1.110 -5.078 -11.683 12.787 Atomic orbital electron populations 1.21805 0.94099 1.02492 1.01844 1.21308 0.95770 0.97221 0.86562 0.91580 1.59024 1.12787 1.26055 1.39083 1.22962 0.95568 1.00182 0.94824 0.89814 1.22406 0.95488 1.02982 0.94270 1.22922 0.92610 0.99665 0.94926 1.64729 1.04838 1.47887 1.08128 1.19521 0.96512 0.87687 0.89026 1.21433 0.97132 1.19666 1.18645 0.91896 1.25968 1.01459 0.94875 0.97349 1.70083 1.34208 1.23377 1.29823 0.85411 0.78857 0.78123 0.78123 1.19191 1.20598 1.19006 1.22912 0.96326 0.96252 0.90875 0.93062 0.91537 0.91814 0.84000 0.84043 0.90760 0.89022 0.96054 0.90717 0.98374 1.01777 0.92544 0.91811 0.96319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.24 71.98 0.66 -2.73 16 2 C 0.10 2.51 2.84 44.92 0.13 2.64 16 3 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 4 N -0.84 -16.15 9.28 -168.67 -1.57 -17.72 16 5 C -0.11 -3.22 2.81 -9.59 -0.03 -3.25 16 6 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 7 C -0.11 -3.04 5.60 31.47 0.18 -2.86 16 8 C 0.03 1.00 6.70 86.45 0.58 1.57 16 9 N -0.53 -24.15 5.34 -887.59 -4.74 -28.90 16 10 C 0.20 11.18 4.60 85.56 0.39 11.57 16 11 C -0.53 -31.03 8.55 25.60 0.22 -30.81 16 12 H 0.06 3.58 7.03 -2.91 -0.02 3.56 16 13 C 0.00 0.10 5.46 84.66 0.46 0.56 16 14 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 15 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 C 0.06 2.57 4.20 86.65 0.36 2.94 16 20 H 0.05 1.36 7.31 -2.39 -0.02 1.34 16 21 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.35 5.89 8.01 -89.70 -0.72 5.18 16 24 H 0.35 5.66 8.95 -89.70 -0.80 4.86 16 25 H 0.07 1.83 7.74 -2.39 -0.02 1.81 16 26 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.02 0.84 7.67 -2.39 -0.02 0.82 16 28 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H -0.04 -2.16 7.97 -2.39 -0.02 -2.18 16 31 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.06 2.64 7.34 -2.39 -0.02 2.62 16 33 H 0.02 0.80 7.92 -2.38 -0.02 0.78 16 Total: -1.00 -65.50 263.99 -1.48 -66.97 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -0.44 Total: 10.42 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 2.96 Total: -20.37 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -6.02 Total: -103.87 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.50 -1.48 -66.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157387377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.449 kcal (2) G-P(sol) polarization free energy of solvation -65.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds