Wall clock time and date at job start Mon Mar 30 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.45922 * 2 1 4 4 C 1.53037 * 109.46355 * 240.02344 * 2 1 3 5 5 C 1.53117 * 109.27955 * 180.81626 * 4 2 1 6 6 H 1.09002 * 109.52261 * 177.55686 * 5 4 2 7 7 N 1.46507 * 109.52049 * 297.68285 * 5 4 2 8 8 C 1.36932 * 119.99988 * 204.87467 * 7 5 4 9 9 H 1.08009 * 120.00131 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00169 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99591 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00122 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47027 * 89.99921 * 12 10 8 14 14 H 1.48491 * 109.46952 * 209.99962 * 12 10 8 15 15 H 1.48498 * 109.46833 * 329.99948 * 12 10 8 16 16 C 1.53120 * 109.16267 * 57.64819 * 5 4 2 17 17 C 1.53031 * 109.27997 * 302.34989 * 16 5 4 18 18 N 1.46846 * 109.52682 * 59.17650 * 17 16 5 19 19 C 1.46898 * 111.00396 * 174.16005 * 18 17 16 20 20 H 1.09001 * 109.46549 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46964 * 299.97781 * 1 2 3 22 22 H 1.08990 * 109.46949 * 59.97975 * 1 2 3 23 23 H 1.08996 * 109.50678 * 60.86894 * 4 2 1 24 24 H 1.09004 * 109.53248 * 300.77120 * 4 2 1 25 25 H 0.96996 * 119.99641 * 24.87505 * 7 5 4 26 26 H 0.97003 * 119.99895 * 179.97438 * 11 10 8 27 27 H 1.09000 * 109.49901 * 62.28855 * 16 5 4 28 28 H 1.08999 * 109.50464 * 182.40252 * 16 5 4 29 29 H 1.08998 * 109.46367 * 299.16354 * 17 16 5 30 30 H 1.09002 * 109.46091 * 179.19015 * 17 16 5 31 31 H 1.08999 * 109.47196 * 184.21047 * 19 18 17 32 32 H 1.09000 * 109.46849 * 304.21396 * 19 18 17 33 33 H 1.08999 * 109.47065 * 64.20817 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7209 -1.2499 5 6 3.5710 -0.7363 -1.2354 6 1 3.9380 -1.2867 -2.1018 7 7 4.0749 0.6387 -1.2794 8 6 5.3250 0.8941 -1.7762 9 1 5.9399 0.0819 -2.1352 10 6 5.8027 2.1969 -1.8175 11 7 5.0536 3.1865 -1.3795 12 14 7.5085 2.5453 -2.4945 13 1 7.4195 2.7954 -3.9555 14 1 8.0733 3.7421 -1.8210 15 1 8.3884 1.3754 -2.2452 16 6 4.0547 -1.4190 0.0470 17 6 3.4863 -0.6779 1.2593 18 7 2.0192 -0.6917 1.1995 19 6 1.4371 -0.1104 2.4165 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5135 0.8902 22 1 -0.3633 0.5141 -0.8897 23 1 1.6897 -0.1983 -2.1399 24 1 1.6659 -1.7447 -1.2582 25 1 3.5228 1.3680 -0.9567 26 1 5.3875 4.0968 -1.4080 27 1 3.7122 -2.4538 0.0598 28 1 5.1438 -1.3951 0.0835 29 1 3.8403 0.3530 1.2533 30 1 3.8172 -1.1701 2.1738 31 1 0.3515 -0.2009 2.3791 32 1 1.8161 -0.6413 3.2898 33 1 1.7119 0.9422 2.4837 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158163171.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:18 Heat of formation + Delta-G solvation = 8.534948 kcal Electronic energy + Delta-G solvation = -13450.477526 eV Core-core repulsion = 11318.072322 eV Total energy + Delta-G solvation = -2132.405203 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.90291 -34.73263 -32.14229 -31.88454 -29.20841 -26.71655 -25.64045 -23.47398 -22.23373 -20.63657 -18.33497 -17.10866 -15.30001 -14.93075 -14.72340 -14.11536 -13.76135 -13.57707 -13.04942 -12.62388 -11.91881 -11.79720 -11.66255 -11.41132 -11.28062 -11.04806 -10.85178 -10.57800 -10.41051 -10.12533 -9.96698 -9.57982 -9.45375 -8.84219 -7.80984 -6.90552 -5.74114 -3.01683 3.44515 3.49782 3.51266 4.37813 4.62425 5.29626 5.36060 5.45865 5.60381 5.72024 5.76424 5.83929 5.92094 5.96255 6.03478 6.08716 6.15957 6.23567 6.33372 6.37111 6.48465 6.63938 6.75467 6.86780 6.97402 7.03541 7.58522 7.62744 7.73233 8.45313 9.55996 10.15455 10.50145 11.48968 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048654 B = 0.009832 C = 0.009700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.359158 B = 2847.037973 C = 2885.868017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.048 0.952 4 C -0.113 4.113 5 C 0.171 3.829 6 H 0.047 0.953 7 N -0.723 5.723 8 C -0.234 4.234 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.936 5.936 12 Si 0.905 3.095 13 H -0.291 1.291 14 H -0.293 1.293 15 H -0.282 1.282 16 C -0.130 4.130 17 C 0.063 3.937 18 N -0.538 5.538 19 C 0.022 3.978 20 H 0.058 0.942 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.382 0.618 26 H 0.254 0.746 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 -7.181 4.351 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 H 0.066 0.934 4 C -0.151 4.151 5 C 0.061 3.939 6 H 0.065 0.935 7 N -0.365 5.365 8 C -0.365 4.365 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.585 5.585 12 Si 0.737 3.263 13 H -0.218 1.218 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.171 4.171 17 C -0.065 4.065 18 N -0.264 5.264 19 C -0.126 4.126 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.216 0.784 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.122 -7.662 4.239 11.287 hybrid contribution 1.110 1.413 -0.110 1.801 sum -6.012 -6.249 4.128 9.604 Atomic orbital electron populations 1.21920 0.95337 1.01778 1.01263 1.21562 0.94161 0.96477 0.90499 0.93369 1.21861 0.97010 1.00031 0.96249 1.20291 0.91108 0.87759 0.94782 0.93461 1.42515 1.17024 1.01882 1.75127 1.19274 0.92187 0.92278 1.32778 0.91217 1.24720 0.98420 0.95730 1.02295 1.69659 1.36861 0.98952 1.53008 0.86208 0.84282 0.77367 0.78480 1.21813 1.21899 1.20811 1.22157 1.00197 0.98031 0.96674 1.21957 0.86091 1.00365 0.98074 1.62030 1.08112 1.54521 1.01725 1.22374 1.00046 0.97364 0.92848 0.92300 0.92965 0.92444 0.91730 0.91810 0.78362 0.93632 0.93043 0.91849 0.93528 0.92462 0.91559 0.92150 0.95895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.77 37.16 0.33 -1.70 16 2 C 0.08 1.40 2.28 -67.72 -0.15 1.24 16 3 H 0.05 0.98 6.64 -51.93 -0.34 0.63 16 4 C -0.11 -2.00 5.03 -26.65 -0.13 -2.13 16 5 C 0.17 3.51 3.12 -67.80 -0.21 3.30 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.72 -18.28 4.40 -53.30 -0.23 -18.51 16 8 C -0.23 -6.53 9.93 -15.06 -0.15 -6.68 16 9 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 11 N -0.94 -28.53 13.06 55.49 0.72 -27.80 16 12 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 C -0.13 -2.45 5.77 -26.65 -0.15 -2.61 16 17 C 0.06 1.15 5.32 -3.84 -0.02 1.13 16 18 N -0.54 -9.00 4.75 -234.93 -1.11 -10.12 16 19 C 0.02 0.32 9.05 60.06 0.54 0.86 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.05 0.67 6.32 -51.93 -0.33 0.35 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.38 10.29 6.21 -40.82 -0.25 10.04 16 26 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.05 1.01 7.69 -51.93 -0.40 0.61 16 30 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 31 H 0.07 0.84 6.21 -51.93 -0.32 0.52 16 32 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 258.31 15.07 3.89 3.89 Total: -1.00 -29.64 258.31 -7.22 -36.86 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.41 Total: 5.22 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.05 Total: -7.15 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.62 Total: -56.43 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.64 -7.22 -36.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158163171.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.392 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds