Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.77865 * 2 1 4 4 C 1.54329 * 110.72033 * 123.23632 * 2 1 3 5 5 N 1.47016 * 107.26914 * 140.55615 * 4 2 1 6 6 C 1.36940 * 125.64721 * 181.09482 * 5 4 2 7 7 H 1.07996 * 119.99895 * 173.54577 * 6 5 4 8 8 C 1.38808 * 119.99792 * 353.55605 * 6 5 4 9 9 N 1.31623 * 120.00214 * 7.17779 * 8 6 5 10 10 Si 1.86805 * 119.99995 * 187.18567 * 8 6 5 11 11 H 1.48500 * 109.46975 * 94.96968 * 10 8 6 12 12 H 1.48504 * 109.46990 * 214.96988 * 10 8 6 13 13 H 1.48503 * 109.46750 * 334.97000 * 10 8 6 14 14 C 1.47425 * 108.70594 * 1.06038 * 5 4 2 15 15 C 1.54910 * 104.83286 * 335.87126 * 14 5 4 16 16 H 1.09001 * 111.00343 * 278.89824 * 15 14 5 17 17 N 1.46894 * 111.00406 * 155.08351 * 15 14 5 18 18 C 1.46904 * 111.00215 * 311.20015 * 17 15 14 19 19 C 1.46896 * 111.00323 * 75.15508 * 17 15 14 20 20 H 1.08994 * 109.47695 * 187.42370 * 1 2 3 21 21 H 1.09006 * 109.47371 * 307.42791 * 1 2 3 22 22 H 1.09009 * 109.46928 * 67.42544 * 1 2 3 23 23 H 1.08998 * 109.87838 * 21.13672 * 4 2 1 24 24 H 1.09001 * 109.88307 * 259.97496 * 4 2 1 25 25 H 0.97004 * 119.99582 * 180.02562 * 9 8 6 26 26 H 1.09001 * 110.36690 * 217.03315 * 14 5 4 27 27 H 1.09000 * 110.46022 * 94.75820 * 14 5 4 28 28 H 1.08996 * 109.47302 * 190.46791 * 18 17 15 29 29 H 1.09000 * 109.46641 * 70.47085 * 18 17 15 30 30 H 1.08999 * 109.47400 * 310.47487 * 18 17 15 31 31 H 1.09000 * 109.47246 * 297.12690 * 19 17 15 32 32 H 1.09008 * 109.46872 * 57.12540 * 19 17 15 33 33 H 1.08997 * 109.47801 * 177.12215 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2444 -1.5507 0.7391 6 6 4.0034 -2.3979 1.5015 7 1 4.7795 -2.9906 1.0403 8 6 3.7751 -2.4952 2.8673 9 7 2.7419 -1.8838 3.4070 10 14 4.9342 -3.4935 3.9393 11 1 5.9570 -2.5951 4.5326 12 1 4.1623 -4.1500 5.0250 13 1 5.6046 -4.5291 3.1125 14 6 3.4632 -1.2498 -0.6875 15 6 2.0789 -0.7955 -1.2138 16 1 1.4454 -1.6536 -1.4381 17 7 2.2219 0.0719 -2.3907 18 6 3.2095 1.1317 -2.1469 19 6 2.5737 -0.7115 -3.5824 20 1 -0.3634 -1.0190 0.1328 21 1 -0.3634 0.6246 0.8161 22 1 -0.3633 0.3945 -0.9490 23 1 1.3129 -1.4757 1.5776 24 1 2.3741 -0.1023 1.9978 25 1 2.5826 -1.9515 4.3614 26 1 3.7960 -2.1426 -1.2168 27 1 4.1936 -0.4485 -0.8002 28 1 3.1631 1.8640 -2.9528 29 1 4.2079 0.6960 -2.1089 30 1 2.9904 1.6212 -1.1980 31 1 3.5429 -1.1869 -3.4316 32 1 1.8160 -1.4768 -3.7509 33 1 2.6233 -0.0524 -4.4491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162609497.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = 32.809549 kcal Electronic energy + Delta-G solvation = -13464.537729 eV Core-core repulsion = 11333.185151 eV Total energy + Delta-G solvation = -2131.352578 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.76039 -35.18433 -32.55520 -30.64250 -27.51270 -27.31377 -25.65963 -24.30174 -22.26215 -19.75295 -18.83233 -16.85729 -15.91580 -14.61319 -14.45517 -14.07495 -13.60426 -13.19581 -13.05706 -12.31194 -12.13512 -11.80750 -11.59285 -11.44492 -11.33225 -11.01912 -10.78746 -10.74131 -10.29569 -10.04671 -9.79449 -9.66364 -9.47295 -8.55840 -7.91441 -6.75831 -5.69587 -3.01969 3.41168 3.46201 3.48313 4.31210 4.53957 5.31666 5.39364 5.48191 5.57468 5.67280 5.72404 5.74483 5.83114 5.99009 6.05628 6.07799 6.17114 6.28967 6.38981 6.60239 6.61656 6.69028 6.78895 6.87473 7.41781 7.49812 7.60879 7.70214 7.87450 8.29369 9.24766 9.85186 10.52612 11.42151 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049610 B = 0.010422 C = 0.009240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.262818 B = 2685.879914 C = 3029.710626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.112 4.112 3 H 0.068 0.932 4 C 0.182 3.818 5 N -0.604 5.604 6 C -0.229 4.229 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.106 3.894 15 C 0.071 3.929 16 H 0.085 0.915 17 N -0.535 5.535 18 C 0.019 3.981 19 C 0.025 3.975 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.252 0.748 26 H 0.031 0.969 27 H 0.023 0.977 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 3.981 -9.624 10.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.131 4.131 3 H 0.087 0.913 4 C 0.057 3.943 5 N -0.330 5.330 6 C -0.358 4.358 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C -0.022 4.022 15 C -0.038 4.038 16 H 0.103 0.897 17 N -0.258 5.258 18 C -0.129 4.129 19 C -0.123 4.123 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.216 4.129 -9.495 10.588 hybrid contribution 1.460 -0.940 0.784 1.905 sum -0.756 3.190 -8.711 9.308 Atomic orbital electron populations 1.21616 0.95190 1.01273 1.00524 1.22547 0.95481 0.99157 0.95916 0.91335 1.21274 0.88802 0.93162 0.91057 1.44379 1.32341 1.51503 1.04779 1.19057 1.11598 1.16028 0.89097 0.90628 1.24825 0.98346 1.00570 0.96614 1.69991 1.28043 1.47571 1.10971 0.86134 0.80215 0.79252 0.80399 1.21647 1.21736 1.20681 1.22191 0.95281 0.97268 0.87493 1.23045 0.97126 0.94707 0.88966 0.89674 1.62196 1.46555 1.13162 1.03906 1.22450 0.93814 0.94671 1.01980 1.22337 0.99395 0.97563 0.93040 0.93065 0.93314 0.93079 0.93719 0.93847 0.93770 0.95040 0.95935 0.92280 0.95039 0.90949 0.95609 0.91754 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.21 37.16 0.34 -1.85 16 2 C -0.11 -2.19 3.07 -88.78 -0.27 -2.46 16 3 H 0.07 1.32 5.94 -51.93 -0.31 1.01 16 4 C 0.18 4.55 4.97 -3.06 -0.02 4.53 16 5 N -0.60 -15.99 3.39 -170.07 -0.58 -16.57 16 6 C -0.23 -6.59 10.26 -15.06 -0.15 -6.75 16 7 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 8 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 9 N -0.92 -27.47 10.37 55.49 0.58 -26.89 16 10 Si 0.91 22.48 29.56 -169.99 -5.02 17.45 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.11 2.30 6.04 -2.53 -0.02 2.28 16 15 C 0.07 1.33 2.54 -65.57 -0.17 1.16 16 16 H 0.09 1.63 7.97 -51.93 -0.41 1.22 16 17 N -0.54 -8.51 5.04 -240.58 -1.21 -9.72 16 18 C 0.02 0.28 8.59 60.07 0.52 0.80 16 19 C 0.03 0.34 9.42 60.06 0.57 0.91 16 20 H 0.05 0.89 7.96 -51.93 -0.41 0.48 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 23 H 0.04 1.22 7.11 -51.93 -0.37 0.85 16 24 H 0.04 1.20 7.36 -51.93 -0.38 0.82 16 25 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.50 5.62 -51.93 -0.29 0.21 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.48 6.48 -51.93 -0.34 0.14 16 30 H 0.07 1.14 5.88 -51.93 -0.31 0.83 16 31 H 0.03 0.36 7.78 -51.93 -0.40 -0.05 16 32 H 0.06 0.83 8.10 -51.92 -0.42 0.40 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 256.34 15.07 3.86 3.86 Total: -1.00 -30.32 256.34 -6.98 -37.29 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -5.31 Total: -3.74 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 0.70 Total: -1.68 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -1.21 Total: -53.19 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.32 -6.98 -37.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162609497.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.101 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds