Wall clock time and date at job start Mon Mar 30 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99658 * 2 1 4 4 C 1.53004 * 109.44683 * 299.96314 * 3 2 1 5 5 C 1.53045 * 109.46288 * 180.02562 * 3 2 1 6 6 C 1.53190 * 109.34313 * 178.62884 * 5 3 2 7 7 N 1.46929 * 108.77277 * 54.61547 * 6 5 3 8 8 C 1.36939 * 120.62427 * 126.37296 * 7 6 5 9 9 H 1.08001 * 119.99489 * 207.68007 * 8 7 6 10 10 C 1.38803 * 120.00513 * 27.68909 * 8 7 6 11 11 N 1.31619 * 120.00080 * 17.35333 * 10 8 7 12 12 Si 1.86797 * 120.00079 * 197.35962 * 10 8 7 13 13 H 1.48506 * 109.47348 * 59.99578 * 12 10 8 14 14 H 1.48498 * 109.47512 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47373 * 299.99844 * 12 10 8 16 16 C 1.46926 * 118.73807 * 306.38928 * 7 6 5 17 17 C 1.53041 * 109.48881 * 59.91390 * 3 2 1 18 18 H 1.08991 * 109.47362 * 60.00360 * 1 2 3 19 19 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47183 * 300.00296 * 1 2 3 21 21 H 1.00897 * 111.00306 * 236.04377 * 2 1 3 22 22 H 1.08999 * 109.47179 * 300.03522 * 4 3 2 23 23 H 1.08998 * 109.47110 * 60.03979 * 4 3 2 24 24 H 1.09004 * 109.47098 * 180.02562 * 4 3 2 25 25 H 1.09001 * 109.49503 * 58.65372 * 5 3 2 26 26 H 1.09008 * 109.48869 * 298.59598 * 5 3 2 27 27 H 1.09003 * 109.58588 * 174.39950 * 6 5 3 28 28 H 1.08996 * 109.58765 * 294.68805 * 6 5 3 29 29 H 0.97006 * 120.00073 * 180.02562 * 11 10 8 30 30 H 1.09010 * 109.57898 * 173.39920 * 16 7 6 31 31 H 1.09001 * 109.58661 * 293.67853 * 16 7 6 32 32 H 1.08996 * 109.46886 * 61.40165 * 17 3 2 33 33 H 1.08999 * 109.52286 * 301.33514 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.5051 2.1052 -1.2499 5 6 3.5252 1.3305 -0.0006 6 6 4.0711 2.7614 -0.0352 7 7 3.4882 3.5170 1.0819 8 6 4.2920 4.1805 1.9701 9 1 3.9568 4.3443 2.9836 10 6 5.5374 4.6428 1.5678 11 7 5.8143 4.7577 0.2862 12 14 6.8207 5.1016 2.8453 13 1 7.1317 3.9153 3.6829 14 1 8.0563 5.5624 2.1625 15 1 6.2947 6.1912 3.7063 16 6 2.0265 3.5469 1.2281 17 6 1.5031 2.1073 1.2484 18 1 -0.3633 0.5137 -0.8899 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.8306 -0.5261 -0.7813 22 1 1.8547 1.5811 -2.1394 23 1 0.4156 2.1346 -1.2501 24 1 1.8959 3.1228 -1.2505 25 1 3.8742 0.7866 -0.8784 26 1 3.8760 0.8290 0.9014 27 1 5.1564 2.7410 0.0644 28 1 3.7996 3.2334 -0.9795 29 1 6.6848 5.0804 0.0050 30 1 1.7628 4.0448 2.1613 31 1 1.5863 4.0859 0.3892 32 1 1.8721 1.5988 2.1390 33 1 0.4132 2.1163 1.2598 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168471912.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:25 Heat of formation + Delta-G solvation = 21.182409 kcal Electronic energy + Delta-G solvation = -13606.240486 eV Core-core repulsion = 11474.383717 eV Total energy + Delta-G solvation = -2131.856768 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.84419 -35.10005 -32.10727 -30.40278 -29.42579 -26.96944 -25.52039 -23.97277 -21.99026 -20.79777 -17.91564 -16.54383 -15.41448 -14.94165 -14.48436 -13.99075 -13.61134 -13.49516 -13.13412 -12.73761 -12.22868 -11.79469 -11.32419 -11.24137 -11.14595 -10.76323 -10.74693 -10.57805 -10.24101 -10.15561 -9.79828 -9.48422 -9.31834 -8.40576 -8.06215 -6.61052 -5.74250 -3.15393 3.41870 3.47314 3.49292 4.54118 4.58424 5.31571 5.37571 5.46450 5.55856 5.63295 5.69901 5.79978 6.01790 6.08252 6.13400 6.23338 6.41404 6.52887 6.57241 6.62915 6.71247 6.83336 6.88793 7.09588 7.41766 7.47981 7.72955 7.74555 7.84565 8.50278 9.26599 9.90430 10.47443 11.34378 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.066904 B = 0.009885 C = 0.009591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.411572 B = 2831.972366 C = 2918.750963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.688 5.688 3 C 0.118 3.882 4 C -0.180 4.180 5 C -0.126 4.126 6 C 0.172 3.828 7 N -0.591 5.591 8 C -0.251 4.251 9 H 0.065 0.935 10 C 0.001 3.999 11 N -0.904 5.904 12 Si 0.902 3.098 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.283 1.283 16 C 0.145 3.855 17 C -0.117 4.117 18 H 0.021 0.979 19 H 0.057 0.943 20 H 0.066 0.934 21 H 0.333 0.667 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.019 0.981 29 H 0.253 0.747 30 H 0.052 0.948 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.728 -6.675 -1.950 10.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.317 5.317 3 C 0.028 3.972 4 C -0.238 4.238 5 C -0.166 4.166 6 C 0.046 3.954 7 N -0.314 5.314 8 C -0.380 4.380 9 H 0.082 0.918 10 C -0.197 4.197 11 N -0.549 5.549 12 Si 0.732 3.268 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.209 1.209 16 C 0.018 3.982 17 C -0.157 4.157 18 H 0.039 0.961 19 H 0.075 0.925 20 H 0.084 0.916 21 H 0.150 0.850 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.525 -6.673 -1.329 10.145 hybrid contribution 0.448 0.471 -0.403 0.765 sum -7.077 -6.201 -1.731 9.567 Atomic orbital electron populations 1.22225 0.89172 1.00723 1.00509 1.60709 1.06919 1.14953 1.49132 1.20877 0.95768 0.86232 0.94305 1.22580 1.00189 1.03093 0.97979 1.22237 0.92680 1.01168 1.00501 1.20804 0.99356 0.85819 0.89443 1.44032 0.99324 1.56708 1.31301 1.19162 0.97882 1.29801 0.91175 0.91778 1.25016 0.99864 0.99118 0.95738 1.70026 1.22051 1.49478 1.13339 0.86374 0.81180 0.78298 0.80945 1.21054 1.21675 1.20941 1.20950 0.86077 0.92613 0.98544 1.22073 0.98231 0.98253 0.97138 0.96074 0.92463 0.91573 0.84997 0.93680 0.93495 0.90541 0.93699 0.92014 0.89485 0.96270 0.93660 0.92936 0.96425 0.91793 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.92 60.06 0.60 0.90 16 2 N -0.69 -10.52 6.44 -107.13 -0.69 -11.21 16 3 C 0.12 2.08 0.71 -131.55 -0.09 1.99 16 4 C -0.18 -2.99 7.47 37.16 0.28 -2.71 16 5 C -0.13 -2.52 5.16 -26.61 -0.14 -2.66 16 6 C 0.17 4.16 4.84 -3.71 -0.02 4.15 16 7 N -0.59 -15.09 3.00 -172.32 -0.52 -15.60 16 8 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 9 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 10 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 11 N -0.90 -26.50 11.19 55.49 0.62 -25.88 16 12 Si 0.90 21.99 29.59 -169.99 -5.03 16.97 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 C 0.15 3.13 6.04 -3.71 -0.02 3.11 16 17 C -0.12 -2.18 4.70 -26.61 -0.13 -2.31 16 18 H 0.02 0.26 6.30 -51.93 -0.33 -0.06 16 19 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.07 0.88 6.27 -51.93 -0.33 0.56 16 21 H 0.33 4.63 8.80 -39.29 -0.35 4.29 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.71 6.40 -51.93 -0.33 0.37 16 24 H 0.08 1.46 4.99 -51.93 -0.26 1.20 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 27 H 0.09 2.37 6.03 -51.93 -0.31 2.05 16 28 H 0.02 0.48 6.70 -51.93 -0.35 0.14 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.05 1.12 7.93 -51.92 -0.41 0.70 16 31 H 0.02 0.39 6.71 -51.93 -0.35 0.04 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.05 0.79 6.34 -51.93 -0.33 0.46 16 LS Contribution 248.27 15.07 3.74 3.74 Total: -1.00 -29.13 248.27 -6.63 -35.77 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.00 Total: 0.96 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.25 Total: -4.75 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.59 Total: -52.69 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.13 -6.63 -35.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168471912.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.948 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds