Wall clock time and date at job start Mon Mar 30 2020 01:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99658 * 2 1 4 4 C 1.53004 * 109.44683 * 299.96314 * 3 2 1 5 5 C 1.53045 * 109.46288 * 180.02562 * 3 2 1 6 6 C 1.53190 * 109.34313 * 178.62884 * 5 3 2 7 7 N 1.46929 * 108.77277 * 54.61547 * 6 5 3 8 8 C 1.36939 * 120.62427 * 126.37296 * 7 6 5 9 9 H 1.08001 * 119.99489 * 207.68007 * 8 7 6 10 10 C 1.38803 * 120.00513 * 27.68909 * 8 7 6 11 11 N 1.31619 * 120.00080 * 17.35333 * 10 8 7 12 12 Si 1.86797 * 120.00079 * 197.35962 * 10 8 7 13 13 H 1.48506 * 109.47348 * 59.99578 * 12 10 8 14 14 H 1.48498 * 109.47512 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47373 * 299.99844 * 12 10 8 16 16 C 1.46926 * 118.73807 * 306.38928 * 7 6 5 17 17 C 1.53041 * 109.48881 * 59.91390 * 3 2 1 18 18 H 1.08991 * 109.47362 * 60.00360 * 1 2 3 19 19 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47183 * 300.00296 * 1 2 3 21 21 H 1.00897 * 111.00306 * 236.04377 * 2 1 3 22 22 H 1.08999 * 109.47179 * 300.03522 * 4 3 2 23 23 H 1.08998 * 109.47110 * 60.03979 * 4 3 2 24 24 H 1.09004 * 109.47098 * 180.02562 * 4 3 2 25 25 H 1.09001 * 109.49503 * 58.65372 * 5 3 2 26 26 H 1.09008 * 109.48869 * 298.59598 * 5 3 2 27 27 H 1.09003 * 109.58588 * 174.39950 * 6 5 3 28 28 H 1.08996 * 109.58765 * 294.68805 * 6 5 3 29 29 H 0.97006 * 120.00073 * 180.02562 * 11 10 8 30 30 H 1.09010 * 109.57898 * 173.39920 * 16 7 6 31 31 H 1.09001 * 109.58661 * 293.67853 * 16 7 6 32 32 H 1.08996 * 109.46886 * 61.40165 * 17 3 2 33 33 H 1.08999 * 109.52286 * 301.33514 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.5051 2.1052 -1.2499 5 6 3.5252 1.3305 -0.0006 6 6 4.0711 2.7614 -0.0352 7 7 3.4882 3.5170 1.0819 8 6 4.2920 4.1805 1.9701 9 1 3.9568 4.3443 2.9836 10 6 5.5374 4.6428 1.5678 11 7 5.8143 4.7577 0.2862 12 14 6.8207 5.1016 2.8453 13 1 7.1317 3.9153 3.6829 14 1 8.0563 5.5624 2.1625 15 1 6.2947 6.1912 3.7063 16 6 2.0265 3.5469 1.2281 17 6 1.5031 2.1073 1.2484 18 1 -0.3633 0.5137 -0.8899 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.8306 -0.5261 -0.7813 22 1 1.8547 1.5811 -2.1394 23 1 0.4156 2.1346 -1.2501 24 1 1.8959 3.1228 -1.2505 25 1 3.8742 0.7866 -0.8784 26 1 3.8760 0.8290 0.9014 27 1 5.1564 2.7410 0.0644 28 1 3.7996 3.2334 -0.9795 29 1 6.6848 5.0804 0.0050 30 1 1.7628 4.0448 2.1613 31 1 1.5863 4.0859 0.3892 32 1 1.8721 1.5988 2.1390 33 1 0.4132 2.1163 1.2598 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168471912.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:24 Heat of formation + Delta-G solvation = 1.194695 kcal Electronic energy + Delta-G solvation = -13607.107218 eV Core-core repulsion = 11474.383717 eV Total energy + Delta-G solvation = -2132.723501 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.37506 -36.80075 -33.94042 -32.07456 -31.16418 -28.50446 -27.01701 -25.64205 -23.68102 -22.55813 -19.61698 -18.36484 -17.02069 -16.63312 -16.02038 -15.52123 -15.29895 -15.08879 -14.81805 -14.34101 -13.66808 -13.16389 -13.14498 -12.93064 -12.69158 -12.54385 -12.38278 -12.19760 -12.05392 -11.89825 -11.64606 -11.21685 -10.98294 -10.49753 -9.25872 -8.65995 -7.86853 -5.31071 1.46448 1.49441 1.56092 2.51957 3.23821 3.38910 3.70553 3.89558 4.06743 4.29603 4.51880 4.53950 4.60957 4.70523 4.74224 4.80087 4.92570 4.97126 5.05025 5.09645 5.20535 5.26941 5.31123 5.43462 5.53928 5.65244 5.81095 6.21872 6.40291 6.59638 7.15960 7.87745 8.39445 9.19416 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.066904 B = 0.009885 C = 0.009591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.411572 B = 2831.972366 C = 2918.750963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.692 5.692 3 C 0.125 3.875 4 C -0.172 4.172 5 C -0.115 4.115 6 C 0.180 3.820 7 N -0.609 5.609 8 C -0.266 4.266 9 H 0.064 0.936 10 C -0.051 4.051 11 N -0.934 5.934 12 Si 0.967 3.033 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.275 1.275 16 C 0.142 3.858 17 C -0.107 4.107 18 H 0.030 0.970 19 H 0.079 0.921 20 H 0.062 0.938 21 H 0.344 0.656 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.004 0.996 29 H 0.250 0.750 30 H 0.050 0.950 31 H 0.019 0.981 32 H 0.049 0.951 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 -7.789 -1.801 12.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.323 5.323 3 C 0.034 3.966 4 C -0.231 4.231 5 C -0.155 4.155 6 C 0.054 3.946 7 N -0.333 5.333 8 C -0.396 4.396 9 H 0.082 0.918 10 C -0.246 4.246 11 N -0.580 5.580 12 Si 0.795 3.205 13 H -0.206 1.206 14 H -0.218 1.218 15 H -0.201 1.201 16 C 0.016 3.984 17 C -0.146 4.146 18 H 0.048 0.952 19 H 0.097 0.903 20 H 0.081 0.919 21 H 0.162 0.838 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.022 0.978 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.835 -7.806 -1.175 11.848 hybrid contribution 0.783 0.806 -0.466 1.216 sum -8.052 -7.000 -1.641 10.795 Atomic orbital electron populations 1.22301 0.87281 1.02334 1.00702 1.60597 1.08641 1.13072 1.49964 1.20654 0.93818 0.87901 0.94245 1.22480 1.01377 1.01230 0.97964 1.22020 0.94869 0.97976 1.00594 1.20581 0.97342 0.88196 0.88450 1.44288 1.00911 1.56941 1.31161 1.19489 0.98708 1.29641 0.91737 0.91832 1.25775 1.01663 0.99631 0.97535 1.70178 1.22149 1.50622 1.15055 0.85352 0.78450 0.78119 0.78601 1.20614 1.21836 1.20059 1.21084 0.84021 0.94890 0.98400 1.21917 0.99752 0.95819 0.97107 0.95170 0.90278 0.91923 0.83822 0.92391 0.91439 0.93454 0.91778 0.93552 0.93135 0.97809 0.94097 0.93141 0.96291 0.93252 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.92 127.69 1.27 1.77 16 2 N -0.69 -18.95 6.44 -492.86 -3.18 -22.13 16 3 C 0.12 4.13 0.71 3.56 0.00 4.13 16 4 C -0.17 -5.32 7.47 71.98 0.54 -4.78 16 5 C -0.12 -4.53 5.16 30.67 0.16 -4.37 16 6 C 0.18 8.92 4.84 86.36 0.42 9.34 16 7 N -0.61 -31.59 3.00 -699.09 -2.09 -33.68 16 8 C -0.27 -15.08 9.58 84.03 0.81 -14.27 16 9 H 0.06 3.53 7.89 -2.91 -0.02 3.50 16 10 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 11 N -0.93 -56.14 11.19 21.65 0.24 -55.90 16 12 Si 0.97 45.79 29.59 68.60 2.03 47.82 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 C 0.14 6.08 6.04 86.36 0.52 6.60 16 17 C -0.11 -3.78 4.70 30.67 0.14 -3.64 16 18 H 0.03 0.62 6.30 -2.39 -0.02 0.60 16 19 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 20 H 0.06 1.42 6.27 -2.39 -0.01 1.41 16 21 H 0.34 8.35 8.80 -89.70 -0.79 7.56 16 22 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 1.81 6.40 -2.39 -0.02 1.79 16 24 H 0.05 1.75 4.99 -2.38 -0.01 1.74 16 25 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.05 2.85 6.03 -2.39 -0.01 2.83 16 28 H 0.00 0.20 6.70 -2.39 -0.02 0.19 16 29 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 30 H 0.05 2.13 7.93 -2.38 -0.02 2.11 16 31 H 0.02 0.82 6.71 -2.39 -0.02 0.80 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.28 6.34 -2.39 -0.02 2.27 16 Total: -1.00 -62.72 248.27 1.58 -61.14 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.30 Total: 10.45 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 4.27 Total: -7.70 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -5.03 Total: -111.70 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -62.72 1.58 -61.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168471912.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.336 kcal (2) G-P(sol) polarization free energy of solvation -62.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds