Wall clock time and date at job start Mon Mar 30 2020 02:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47441 * 2 1 4 4 C 1.50704 * 109.47048 * 119.99988 * 2 1 3 5 5 H 1.07996 * 119.99944 * 115.35436 * 4 2 1 6 6 C 1.37879 * 120.00006 * 295.35993 * 4 2 1 7 7 N 1.31518 * 119.99838 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99915 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47458 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47497 * 119.99796 * 8 6 4 11 11 H 1.48506 * 109.47135 * 239.99365 * 8 6 4 12 12 N 1.46899 * 109.46879 * 239.99744 * 2 1 3 13 13 C 1.47842 * 111.00272 * 289.93847 * 12 2 1 14 14 C 1.54907 * 104.79731 * 213.63853 * 13 12 2 15 15 C 1.55143 * 101.65152 * 37.06834 * 14 13 12 16 16 C 1.47442 * 110.99779 * 169.09566 * 12 2 1 17 17 H 1.09003 * 109.88725 * 242.66687 * 16 12 2 18 18 C 1.53005 * 109.88918 * 3.68772 * 16 12 2 19 19 N 1.46897 * 109.46911 * 185.62287 * 18 16 12 20 20 H 1.08995 * 109.47120 * 56.50739 * 1 2 3 21 21 H 1.09007 * 109.46733 * 296.51577 * 1 2 3 22 22 H 1.08996 * 109.47696 * 176.51231 * 1 2 3 23 23 H 0.97005 * 119.99727 * 180.02562 * 7 6 4 24 24 H 1.09004 * 110.37527 * 332.46701 * 13 12 2 25 25 H 1.09004 * 110.37387 * 94.80579 * 13 12 2 26 26 H 1.09002 * 110.98988 * 278.97713 * 14 13 12 27 27 H 1.08996 * 111.02435 * 155.17261 * 14 13 12 28 28 H 1.09001 * 110.70539 * 205.96433 * 15 14 13 29 29 H 1.09000 * 110.85563 * 82.79996 * 15 14 13 30 30 H 1.08996 * 109.47375 * 305.62952 * 18 16 12 31 31 H 1.08999 * 109.46679 * 65.62741 * 18 16 12 32 32 H 1.00900 * 110.99991 * 61.31582 * 19 18 16 33 33 H 1.00907 * 110.99837 * 185.26853 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5899 -1.6302 1.1332 6 6 1.7799 -0.1862 2.4805 7 7 1.1013 0.9341 2.5990 8 14 2.4032 -1.0664 4.0056 9 1 3.1335 -2.2955 3.6042 10 1 3.3183 -0.1692 4.7558 11 1 1.2528 -1.4345 4.8696 12 7 2.0196 -0.6926 -1.1994 13 6 1.7525 -2.1444 -1.1191 14 6 2.9480 -2.8075 -1.8476 15 6 4.1230 -1.8881 -1.4224 16 6 3.4701 -0.4909 -1.3709 17 1 3.6628 0.0431 -2.3014 18 6 4.0282 0.3050 -0.1893 19 7 5.4429 0.6166 -0.4333 20 1 -0.3633 0.5671 -0.8570 21 1 -0.3633 0.4588 0.9196 22 1 -0.3634 -1.0257 -0.0625 23 1 0.9240 1.3031 3.4784 24 1 1.7162 -2.4666 -0.0784 25 1 0.8179 -2.3869 -1.6251 26 1 2.8070 -2.7866 -2.9283 27 1 3.1033 -3.8274 -1.4959 28 1 4.9205 -1.9137 -2.1650 29 1 4.5028 -2.1725 -0.4411 30 1 3.4659 1.2320 -0.0776 31 1 3.9384 -0.2864 0.7219 32 1 5.5508 1.1827 -1.2616 33 1 5.8576 1.0667 0.3689 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168919632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:44 Heat of formation + Delta-G solvation = -8.487806 kcal Electronic energy + Delta-G solvation = -13822.294154 eV Core-core repulsion = 11689.150788 eV Total energy + Delta-G solvation = -2133.143366 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.54188 -35.56880 -34.95738 -32.97580 -29.88782 -29.00551 -27.40462 -24.46045 -23.28962 -21.74025 -19.94117 -18.43641 -17.15299 -16.65049 -16.22797 -15.75492 -15.57747 -14.70377 -14.49680 -14.18056 -13.50369 -13.12179 -12.99186 -12.83522 -12.55534 -12.35966 -12.13723 -11.87429 -11.73473 -11.69404 -11.63000 -11.28557 -10.89231 -10.45714 -9.39229 -8.90003 -8.04307 -6.16435 1.35263 1.40243 1.48389 2.40341 3.16506 3.44405 3.92059 4.00725 4.11167 4.30108 4.57564 4.71659 4.75589 4.86732 4.98363 5.09279 5.13269 5.19232 5.21749 5.24841 5.32253 5.45609 5.58152 5.68555 5.72386 5.97445 6.22533 6.26944 6.43283 6.64297 6.75639 6.98063 7.46114 8.94492 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030254 B = 0.015389 C = 0.013729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.278514 B = 1819.069210 C = 2039.010630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.199 3.801 3 H 0.019 0.981 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.021 3.979 7 N -0.915 5.915 8 Si 0.938 3.062 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.535 5.535 13 C 0.038 3.962 14 C -0.123 4.123 15 C -0.109 4.109 16 C 0.085 3.915 17 H 0.066 0.934 18 C 0.051 3.949 19 N -0.845 5.845 20 H 0.024 0.976 21 H 0.051 0.949 22 H 0.029 0.971 23 H 0.260 0.740 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.004 0.996 31 H 0.086 0.914 32 H 0.338 0.662 33 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -3.831 -5.808 8.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.037 0.963 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.179 4.179 7 N -0.554 5.554 8 Si 0.765 3.235 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.259 5.259 13 C -0.090 4.090 14 C -0.161 4.161 15 C -0.148 4.148 16 C -0.024 4.024 17 H 0.084 0.916 18 C -0.080 4.080 19 N -0.375 5.375 20 H 0.043 0.957 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.104 0.896 32 H 0.150 0.850 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.766 -4.279 -6.175 8.897 hybrid contribution 0.085 0.693 2.013 2.130 sum 4.851 -3.586 -4.162 7.329 Atomic orbital electron populations 1.21562 0.98105 0.98628 0.99193 1.19329 0.92048 0.93738 0.85786 0.96338 1.21815 1.33505 1.08713 0.92102 0.92333 1.25524 0.95607 0.95530 1.01208 1.70035 1.40921 1.20612 1.23865 0.85809 0.78075 0.78972 0.80660 1.19400 1.20983 1.20999 1.64001 1.13050 1.09981 1.38886 1.23057 0.98309 0.88110 0.99559 1.22706 0.94145 0.98663 1.00555 1.22554 0.97525 0.93825 1.00883 1.22140 0.87353 0.96392 0.96477 0.91565 1.22611 0.86889 0.98278 1.00221 1.58811 1.16186 1.53689 1.08810 0.95721 0.93041 0.95174 0.93110 0.93625 0.91732 0.90219 0.90316 0.90204 0.93173 0.97739 0.89584 0.84993 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 9.16 71.98 0.66 -5.04 16 2 C 0.20 9.81 1.82 44.17 0.08 9.90 16 3 H 0.02 1.04 5.85 -2.39 -0.01 1.03 16 4 C -0.52 -26.91 4.23 25.60 0.11 -26.80 16 5 H 0.06 3.05 5.86 -2.91 -0.02 3.03 16 6 C 0.02 1.11 5.31 84.65 0.45 1.56 16 7 N -0.91 -51.40 11.66 21.45 0.25 -51.15 16 8 Si 0.94 42.71 29.54 68.60 2.03 44.74 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 N -0.53 -22.85 5.12 -839.88 -4.30 -27.16 16 13 C 0.04 1.45 5.39 86.77 0.47 1.92 16 14 C -0.12 -3.81 7.08 31.98 0.23 -3.58 16 15 C -0.11 -3.66 6.30 31.77 0.20 -3.46 16 16 C 0.09 3.27 3.50 45.26 0.16 3.43 16 17 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 18 C 0.05 2.07 4.65 86.31 0.40 2.48 16 19 N -0.85 -27.39 9.41 -186.72 -1.76 -29.15 16 20 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.05 2.75 6.38 -2.38 -0.02 2.74 16 22 H 0.03 1.39 7.43 -2.39 -0.02 1.37 16 23 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 24 H 0.05 1.99 5.42 -2.38 -0.01 1.98 16 25 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 29 H 0.05 1.84 7.77 -2.39 -0.02 1.83 16 30 H 0.00 0.21 5.96 -2.39 -0.01 0.20 16 31 H 0.09 4.07 5.03 -2.39 -0.01 4.06 16 32 H 0.34 9.50 9.05 -89.69 -0.81 8.69 16 33 H 0.34 10.29 9.08 -89.69 -0.81 9.48 16 Total: -1.00 -56.27 249.45 -1.55 -57.82 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.51 Total: 24.52 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 2.75 Total: -19.62 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -5.81 Total: -107.46 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -56.27 -1.55 -57.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168919632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.333 kcal (2) G-P(sol) polarization free energy of solvation -56.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds