Wall clock time and date at job start Mon Mar 30 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46945 * 2 1 4 4 C 1.50700 * 109.47087 * 240.00882 * 2 1 3 5 5 H 1.07999 * 119.99591 * 239.99961 * 4 2 1 6 6 C 1.37877 * 120.00355 * 59.99592 * 4 2 1 7 7 N 1.31512 * 120.00033 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00146 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46976 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47266 * 119.99884 * 8 6 4 11 11 H 1.48497 * 109.47272 * 240.00409 * 8 6 4 12 12 N 1.46897 * 109.47418 * 120.00450 * 2 1 3 13 13 C 1.47896 * 110.99782 * 55.12430 * 12 2 1 14 14 C 1.53997 * 107.05754 * 145.84347 * 13 12 2 15 15 C 1.54599 * 105.13815 * 358.77976 * 14 13 12 16 16 C 1.49005 * 110.97145 * 172.57093 * 12 2 1 17 17 H 1.09003 * 110.68346 * 318.61724 * 16 12 2 18 18 C 1.53001 * 110.86428 * 81.89270 * 16 12 2 19 19 N 1.46897 * 109.47381 * 300.10450 * 18 16 12 20 20 H 1.09000 * 109.46841 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47205 * 299.99814 * 1 2 3 22 22 H 1.09001 * 109.47135 * 59.99768 * 1 2 3 23 23 H 0.96998 * 120.00462 * 180.02562 * 7 6 4 24 24 H 1.09008 * 109.92080 * 26.49628 * 13 12 2 25 25 H 1.08993 * 109.92102 * 265.19837 * 13 12 2 26 26 H 1.08999 * 110.31386 * 239.86336 * 14 13 12 27 27 H 1.09002 * 110.30705 * 117.69177 * 14 13 12 28 28 H 1.09002 * 110.72617 * 96.39862 * 15 14 13 29 29 H 1.08997 * 110.72339 * 219.50901 * 15 14 13 30 30 H 1.09005 * 109.46662 * 60.11006 * 18 16 12 31 31 H 1.09000 * 109.46670 * 180.10117 * 18 16 12 32 32 H 1.00896 * 110.99613 * 179.97438 * 19 18 16 33 33 H 1.00897 * 111.00125 * 303.95236 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2391 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3214 -1.1199 -4.0081 9 1 3.1455 -2.2873 -3.6040 10 1 1.1661 -1.5862 -4.8162 11 1 3.1466 -0.1869 -4.8165 12 7 2.0198 -0.6926 1.1993 13 6 1.4521 -2.0550 1.2935 14 6 2.5326 -2.9518 1.9258 15 6 3.7474 -2.0226 2.1512 16 6 3.4983 -0.8698 1.1465 17 1 3.8160 -1.1576 0.1442 18 6 4.2163 0.4040 1.5971 19 7 3.8397 1.5166 0.7150 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.7088 1.1617 -3.4843 24 1 1.2006 -2.4221 0.2984 25 1 0.5631 -2.0441 1.9239 26 1 2.7970 -3.7621 1.2463 27 1 2.1820 -3.3535 2.8765 28 1 3.7608 -1.6465 3.1742 29 1 4.6778 -2.5412 1.9201 30 1 3.9292 0.6395 2.6220 31 1 5.2942 0.2501 1.5480 32 1 4.3009 2.3700 0.9924 33 1 4.0367 1.2959 -0.2497 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168919724.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:47 Heat of formation + Delta-G solvation = 5.462323 kcal Electronic energy + Delta-G solvation = -13725.584548 eV Core-core repulsion = 11593.046106 eV Total energy + Delta-G solvation = -2132.538443 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.43145 -33.75230 -33.39087 -31.03373 -28.25845 -27.13067 -25.05937 -23.41726 -20.99766 -19.64283 -18.85421 -16.17445 -15.59535 -14.86496 -14.45004 -13.92077 -13.78794 -13.12748 -12.77147 -12.25430 -12.04249 -11.37889 -11.09745 -10.95829 -10.89122 -10.58376 -10.44645 -10.21615 -9.98612 -9.82149 -9.72306 -9.56006 -9.00155 -8.33091 -7.66577 -6.94727 -5.86740 -3.97754 3.28303 3.37543 3.39904 4.46207 5.10015 5.21915 5.36457 5.44168 5.67408 5.71020 5.98943 6.09764 6.19700 6.27160 6.36945 6.44614 6.54718 6.82801 6.99648 7.02701 7.11631 7.22607 7.35704 7.79521 7.83620 7.93860 8.16812 8.28390 8.37836 8.51211 8.68449 9.17076 9.67167 11.12308 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.013907 C = 0.013238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.577311 B = 2012.820648 C = 2114.630567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.189 3.811 3 H 0.084 0.916 4 C -0.533 4.533 5 H 0.052 0.948 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.879 3.121 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.500 5.500 13 C 0.037 3.963 14 C -0.129 4.129 15 C -0.119 4.119 16 C 0.064 3.936 17 H 0.068 0.932 18 C 0.087 3.913 19 N -0.831 5.831 20 H 0.019 0.981 21 H 0.011 0.989 22 H 0.081 0.919 23 H 0.257 0.743 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.010 0.990 32 H 0.322 0.678 33 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -2.920 6.198 8.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.082 3.918 3 H 0.102 0.898 4 C -0.573 4.573 5 H 0.070 0.930 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.707 3.293 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.225 5.225 13 C -0.092 4.092 14 C -0.167 4.167 15 C -0.158 4.158 16 C -0.045 4.045 17 H 0.086 0.914 18 C -0.044 4.044 19 N -0.361 5.361 20 H 0.038 0.962 21 H 0.030 0.970 22 H 0.099 0.901 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.134 0.866 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.114 -2.597 6.761 8.330 hybrid contribution 1.484 -1.077 -2.005 2.717 sum 5.599 -3.674 4.755 8.213 Atomic orbital electron populations 1.21850 0.98881 0.98508 0.99975 1.19731 0.91322 0.97096 0.83665 0.89839 1.21795 1.31141 1.12286 0.92037 0.93038 1.24869 0.95180 0.94911 0.98462 1.69906 1.36693 1.22777 1.22860 0.86763 0.78657 0.79775 0.84072 1.20204 1.21213 1.21184 1.65204 1.02499 1.13572 1.41216 1.22703 0.96330 0.90520 0.99609 1.22375 0.96435 0.97994 0.99882 1.22471 0.97089 0.96657 0.99596 1.22794 0.91493 0.92478 0.97751 0.91436 1.21591 0.94238 0.91480 0.97104 1.58656 1.65892 1.04355 1.07164 0.96195 0.97010 0.90068 0.93247 0.92710 0.92636 0.92631 0.92489 0.91813 0.92642 0.91770 0.97215 0.86634 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 8.77 37.16 0.33 -3.08 16 2 C 0.19 4.74 2.13 -68.86 -0.15 4.59 16 3 H 0.08 2.27 5.83 -51.93 -0.30 1.97 16 4 C -0.53 -14.14 6.43 -34.44 -0.22 -14.36 16 5 H 0.05 1.39 5.99 -52.49 -0.31 1.08 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -24.95 11.32 55.43 0.63 -24.33 16 8 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 N -0.50 -11.03 5.06 -215.71 -1.09 -12.13 16 13 C 0.04 0.76 5.02 -2.76 -0.01 0.74 16 14 C -0.13 -2.18 6.93 -25.37 -0.18 -2.35 16 15 C -0.12 -1.97 6.49 -24.87 -0.16 -2.13 16 16 C 0.06 1.26 2.43 -65.52 -0.16 1.10 16 17 H 0.07 1.50 5.72 -51.93 -0.30 1.20 16 18 C 0.09 1.53 6.55 -3.83 -0.03 1.50 16 19 N -0.83 -15.37 7.09 -10.37 -0.07 -15.45 16 20 H 0.02 0.48 6.77 -51.93 -0.35 0.13 16 21 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 22 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.05 1.25 6.17 -51.92 -0.32 0.93 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.99 8.02 -51.93 -0.42 0.57 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.32 4.99 9.08 -39.29 -0.36 4.63 16 33 H 0.35 6.94 8.83 -39.29 -0.35 6.60 16 LS Contribution 252.13 15.07 3.80 3.80 Total: -1.00 -27.99 252.13 -7.55 -35.54 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.11 Total: 8.73 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -0.67 Total: -12.25 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.54 Total: -51.90 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.99 -7.55 -35.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168919724.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.000 kcal (2) G-P(sol) polarization free energy of solvation -27.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds