Wall clock time and date at job start Mon Mar 30 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46945 * 2 1 4 4 C 1.50700 * 109.47087 * 240.00882 * 2 1 3 5 5 H 1.07999 * 119.99591 * 239.99961 * 4 2 1 6 6 C 1.37877 * 120.00355 * 59.99592 * 4 2 1 7 7 N 1.31512 * 120.00033 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00146 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46976 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47266 * 119.99884 * 8 6 4 11 11 H 1.48497 * 109.47272 * 240.00409 * 8 6 4 12 12 N 1.46897 * 109.47418 * 120.00450 * 2 1 3 13 13 C 1.47896 * 110.99782 * 55.12430 * 12 2 1 14 14 C 1.53997 * 107.05754 * 145.84347 * 13 12 2 15 15 C 1.54599 * 105.13815 * 358.77976 * 14 13 12 16 16 C 1.49005 * 110.97145 * 172.57093 * 12 2 1 17 17 H 1.09003 * 110.68346 * 318.61724 * 16 12 2 18 18 C 1.53001 * 110.86428 * 81.89270 * 16 12 2 19 19 N 1.46897 * 109.47381 * 300.10450 * 18 16 12 20 20 H 1.09000 * 109.46841 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47205 * 299.99814 * 1 2 3 22 22 H 1.09001 * 109.47135 * 59.99768 * 1 2 3 23 23 H 0.96998 * 120.00462 * 180.02562 * 7 6 4 24 24 H 1.09008 * 109.92080 * 26.49628 * 13 12 2 25 25 H 1.08993 * 109.92102 * 265.19837 * 13 12 2 26 26 H 1.08999 * 110.31386 * 239.86336 * 14 13 12 27 27 H 1.09002 * 110.30705 * 117.69177 * 14 13 12 28 28 H 1.09002 * 110.72617 * 96.39862 * 15 14 13 29 29 H 1.08997 * 110.72339 * 219.50901 * 15 14 13 30 30 H 1.09005 * 109.46662 * 60.11006 * 18 16 12 31 31 H 1.09000 * 109.46670 * 180.10117 * 18 16 12 32 32 H 1.00896 * 110.99613 * 179.97438 * 19 18 16 33 33 H 1.00897 * 111.00125 * 303.95236 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2391 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3214 -1.1199 -4.0081 9 1 3.1455 -2.2873 -3.6040 10 1 1.1661 -1.5862 -4.8162 11 1 3.1466 -0.1869 -4.8165 12 7 2.0198 -0.6926 1.1993 13 6 1.4521 -2.0550 1.2935 14 6 2.5326 -2.9518 1.9258 15 6 3.7474 -2.0226 2.1512 16 6 3.4983 -0.8698 1.1465 17 1 3.8160 -1.1576 0.1442 18 6 4.2163 0.4040 1.5971 19 7 3.8397 1.5166 0.7150 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.7088 1.1617 -3.4843 24 1 1.2006 -2.4221 0.2984 25 1 0.5631 -2.0441 1.9239 26 1 2.7970 -3.7621 1.2463 27 1 2.1820 -3.3535 2.8765 28 1 3.7608 -1.6465 3.1742 29 1 4.6778 -2.5412 1.9201 30 1 3.9292 0.6395 2.6220 31 1 5.2942 0.2501 1.5480 32 1 4.3009 2.3700 0.9924 33 1 4.0367 1.2959 -0.2497 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168919724.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:47 Heat of formation + Delta-G solvation = -14.796060 kcal Electronic energy + Delta-G solvation = -13726.463018 eV Core-core repulsion = 11593.046106 eV Total energy + Delta-G solvation = -2133.416912 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05019 -35.59372 -34.90807 -32.91807 -29.77545 -28.91502 -27.14702 -24.93731 -22.67120 -21.13619 -20.65821 -18.11979 -17.30759 -16.44202 -16.21747 -15.43528 -15.37361 -14.67268 -14.61592 -13.90678 -13.80062 -13.11924 -12.90521 -12.78509 -12.65612 -12.39170 -12.01004 -11.84321 -11.70383 -11.59279 -11.45563 -11.22732 -10.97553 -10.38287 -9.15639 -8.76773 -7.91961 -6.10770 1.36537 1.40685 1.48562 2.45024 3.26526 3.58552 3.79500 4.04789 4.24443 4.33123 4.50370 4.69531 4.77896 4.91108 4.96423 5.02294 5.07578 5.16323 5.21659 5.25739 5.36530 5.45227 5.54747 5.67429 5.89837 6.22548 6.38742 6.46560 6.58092 6.75672 6.88197 7.15123 7.57158 9.03438 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.013907 C = 0.013238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.577311 B = 2012.820648 C = 2114.630567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.195 3.805 3 H 0.064 0.936 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.938 3.062 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.281 1.281 12 N -0.506 5.506 13 C 0.034 3.966 14 C -0.122 4.122 15 C -0.110 4.110 16 C 0.058 3.942 17 H 0.038 0.962 18 C 0.091 3.909 19 N -0.847 5.847 20 H 0.018 0.982 21 H 0.018 0.982 22 H 0.056 0.944 23 H 0.257 0.743 24 H 0.024 0.976 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.338 0.662 33 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.319 -3.877 7.222 10.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.081 0.919 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.551 5.551 8 Si 0.765 3.235 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.207 1.207 12 N -0.230 5.230 13 C -0.095 4.095 14 C -0.161 4.161 15 C -0.149 4.149 16 C -0.051 4.051 17 H 0.056 0.944 18 C -0.040 4.040 19 N -0.378 5.378 20 H 0.037 0.963 21 H 0.038 0.962 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.151 0.849 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.338 -3.556 7.806 10.104 hybrid contribution 1.098 -0.770 -2.279 2.644 sum 6.436 -4.326 5.527 9.523 Atomic orbital electron populations 1.21725 0.99474 0.98085 0.99086 1.19490 0.90788 0.96394 0.84625 0.91857 1.21911 1.30430 1.11717 0.92782 0.93815 1.25500 0.95581 0.95618 1.01012 1.70024 1.37814 1.23996 1.23298 0.85830 0.77966 0.78758 0.80916 1.19958 1.21394 1.20729 1.65136 1.04316 1.14387 1.39182 1.22724 0.97911 0.90467 0.98396 1.22351 0.95332 0.97439 1.00934 1.22462 0.97789 0.95213 0.99420 1.22900 0.89895 0.94896 0.97449 0.94376 1.21591 0.95398 0.90188 0.96856 1.58614 1.66799 1.05644 1.06705 0.96276 0.96249 0.92477 0.93351 0.95784 0.92329 0.92187 0.89820 0.90124 0.90443 0.91137 0.94716 0.84880 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.46 8.77 71.98 0.63 -5.83 16 2 C 0.19 9.87 2.13 44.17 0.09 9.96 16 3 H 0.06 3.49 5.83 -2.38 -0.01 3.48 16 4 C -0.53 -28.31 6.43 25.60 0.16 -28.14 16 5 H 0.04 2.38 5.99 -2.91 -0.02 2.36 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -52.26 11.32 21.45 0.24 -52.01 16 8 Si 0.94 43.65 29.54 68.60 2.03 45.68 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 N -0.51 -21.91 5.06 -836.39 -4.24 -26.15 16 13 C 0.03 1.35 5.02 86.45 0.43 1.78 16 14 C -0.12 -3.79 6.93 31.48 0.22 -3.57 16 15 C -0.11 -3.26 6.49 31.80 0.21 -3.06 16 16 C 0.06 2.17 2.43 45.17 0.11 2.28 16 17 H 0.04 1.67 5.72 -2.39 -0.01 1.66 16 18 C 0.09 2.99 6.55 86.30 0.57 3.56 16 19 N -0.85 -30.75 7.09 -186.72 -1.32 -32.07 16 20 H 0.02 0.93 6.77 -2.39 -0.02 0.91 16 21 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 23 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 24 H 0.02 1.09 6.17 -2.38 -0.01 1.08 16 25 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.14 8.02 -2.39 -0.02 2.12 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 2.24 8.10 -2.38 -0.02 2.23 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.34 10.11 9.08 -89.70 -0.81 9.30 16 33 H 0.34 13.50 8.83 -89.70 -0.79 12.70 16 Total: -1.00 -59.31 252.13 -0.92 -60.23 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.50 Total: 25.71 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 2.87 Total: -21.38 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -5.32 Total: -110.23 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -59.31 -0.92 -60.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168919724.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.430 kcal (2) G-P(sol) polarization free energy of solvation -59.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds