Wall clock time and date at job start Mon Mar 30 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.46109 * 2 1 4 4 C 1.53041 * 109.46329 * 119.97696 * 2 1 3 5 5 C 1.53126 * 109.27636 * 179.18882 * 4 2 1 6 6 H 1.09003 * 109.52028 * 182.44036 * 5 4 2 7 7 N 1.46895 * 109.52560 * 62.24938 * 5 4 2 8 8 C 1.53119 * 109.15766 * 302.34353 * 5 4 2 9 9 C 1.53037 * 109.28036 * 57.65741 * 8 5 4 10 10 N 1.46845 * 109.45682 * 240.02429 * 2 1 3 11 11 C 1.46906 * 110.99844 * 54.15066 * 10 2 1 12 12 C 1.50700 * 109.47089 * 191.29810 * 11 10 2 13 13 H 1.08000 * 120.00204 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99624 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00310 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99669 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47042 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47092 * 119.99561 * 16 14 12 19 19 H 1.48501 * 109.46859 * 239.99798 * 16 14 12 20 20 H 1.08997 * 109.47399 * 292.95326 * 1 2 3 21 21 H 1.09000 * 109.47314 * 52.95895 * 1 2 3 22 22 H 1.09005 * 109.47102 * 172.95934 * 1 2 3 23 23 H 1.08992 * 109.50295 * 59.24734 * 4 2 1 24 24 H 1.08993 * 109.50362 * 299.12361 * 4 2 1 25 25 H 1.00906 * 110.99735 * 180.31504 * 7 5 4 26 26 H 1.00894 * 111.00215 * 304.27125 * 7 5 4 27 27 H 1.09004 * 109.50647 * 297.71082 * 8 5 4 28 28 H 1.09008 * 109.53068 * 177.62087 * 8 5 4 29 29 H 1.09000 * 109.45999 * 60.83771 * 9 8 5 30 30 H 1.08997 * 109.46305 * 180.80344 * 9 8 5 31 31 H 1.09005 * 109.46933 * 311.29389 * 11 10 2 32 32 H 1.09001 * 109.46886 * 71.29477 * 11 10 2 33 33 H 0.97002 * 120.00243 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 1.2499 5 6 3.5710 -0.7362 1.2354 6 1 3.9379 -1.2865 2.1018 7 7 4.0761 0.6425 1.2780 8 6 4.0545 -1.4190 -0.0470 9 6 3.4862 -0.6779 -1.2593 10 7 2.0190 -0.6918 -1.1994 11 6 1.4370 -0.1105 -2.4165 12 6 1.7343 -1.0052 -3.5922 13 1 2.2994 -1.9144 -3.4497 14 6 1.2847 -0.6629 -4.8499 15 7 0.5962 0.4440 -5.0235 16 14 1.6538 -1.7715 -6.3075 17 1 2.4388 -2.9460 -5.8497 18 1 0.3791 -2.2333 -6.9134 19 1 2.4373 -1.0163 -7.3179 20 1 -0.3634 0.4007 0.9463 21 1 -0.3634 0.6190 -0.8203 22 1 -0.3633 -1.0200 -0.1260 23 1 1.6658 -1.7447 1.2576 24 1 1.6896 -0.1982 2.1399 25 1 5.0849 0.6585 1.2641 26 1 3.6953 1.1906 0.5214 27 1 3.7122 -2.4538 -0.0597 28 1 5.1437 -1.3957 -0.0838 29 1 3.8402 0.3530 -1.2534 30 1 3.8171 -1.1701 -2.1738 31 1 0.3579 -0.0174 -2.2945 32 1 1.8694 0.8748 -2.5912 33 1 0.2796 0.6847 -5.9083 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168959363.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:49 Heat of formation + Delta-G solvation = -29.172914 kcal Electronic energy + Delta-G solvation = -13400.867593 eV Core-core repulsion = 11266.827254 eV Total energy + Delta-G solvation = -2134.040339 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.49851 -36.22963 -34.57032 -33.19072 -30.79596 -28.55563 -27.82432 -25.26527 -23.24526 -21.95979 -19.83886 -18.49053 -17.16674 -16.75079 -16.32569 -15.83342 -15.52244 -15.18781 -14.69749 -14.14187 -14.06733 -13.20741 -13.10159 -12.82663 -12.75085 -12.64352 -12.61921 -12.20632 -12.08060 -11.82150 -11.69134 -11.14484 -10.92671 -10.57580 -9.61106 -8.93904 -8.21335 -6.30961 1.38241 1.39013 1.52394 2.38428 3.10473 3.26701 3.70821 3.87666 3.95668 4.15057 4.26671 4.39883 4.51212 4.57125 4.77509 4.84835 4.93751 5.02593 5.08201 5.12867 5.22666 5.27193 5.30932 5.38243 5.45073 5.65945 6.07828 6.22140 6.39428 6.57006 6.70695 6.86253 7.38481 8.89599 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048302 B = 0.009955 C = 0.008979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.546702 B = 2811.981523 C = 3117.699960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.075 3.925 3 H 0.021 0.979 4 C -0.095 4.095 5 C 0.093 3.907 6 H 0.099 0.901 7 N -0.845 5.845 8 C -0.141 4.141 9 C 0.064 3.936 10 N -0.536 5.536 11 C 0.203 3.797 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.279 1.279 20 H 0.080 0.920 21 H 0.033 0.967 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.346 0.654 26 H 0.332 0.668 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.010 0.990 30 H 0.055 0.945 31 H 0.019 0.981 32 H -0.048 1.048 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.382 -2.449 10.930 12.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 H 0.039 0.961 4 C -0.133 4.133 5 C -0.019 4.019 6 H 0.117 0.883 7 N -0.376 5.376 8 C -0.181 4.181 9 C -0.064 4.064 10 N -0.261 5.261 11 C 0.077 3.923 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.205 1.205 20 H 0.099 0.901 21 H 0.052 0.948 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.159 0.841 26 H 0.146 0.854 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.037 0.963 32 H -0.030 1.030 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.782 -2.788 11.563 12.819 hybrid contribution 0.556 0.501 -2.293 2.412 sum 5.337 -2.288 9.269 10.938 Atomic orbital electron populations 1.21819 0.94651 1.01788 1.01329 1.21661 0.95680 0.94763 0.91254 0.96093 1.21614 0.94717 1.01085 0.95876 1.21496 0.94903 0.89081 0.96385 0.88290 1.59085 1.13446 1.11940 1.53083 1.22364 1.00174 1.00658 0.94907 1.21913 0.88110 0.97379 0.99022 1.62037 1.06767 1.55026 1.02292 1.19463 0.94364 0.91283 0.87209 1.21502 1.34173 1.07559 0.92719 0.92266 1.25902 0.95008 0.96802 1.02017 1.70089 1.38352 1.25344 1.23690 0.85358 0.78089 0.78782 0.78530 1.18846 1.20317 1.20456 0.90122 0.94825 0.92614 0.90849 0.89988 0.84057 0.85442 0.91175 0.90344 0.97147 0.92608 0.96280 1.02997 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 8.55 71.98 0.62 -4.26 16 2 C 0.07 2.70 2.21 44.94 0.10 2.80 16 3 H 0.02 0.80 6.64 -2.39 -0.02 0.78 16 4 C -0.09 -2.67 5.07 30.65 0.16 -2.52 16 5 C 0.09 2.36 3.72 45.00 0.17 2.53 16 6 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 7 N -0.85 -21.06 9.17 -168.34 -1.54 -22.60 16 8 C -0.14 -4.05 5.76 30.65 0.18 -3.87 16 9 C 0.06 2.48 5.06 86.33 0.44 2.92 16 10 N -0.54 -23.28 4.47 -875.65 -3.92 -27.19 16 11 C 0.20 11.00 4.46 85.56 0.38 11.38 16 12 C -0.52 -30.05 8.44 25.60 0.22 -29.84 16 13 H 0.06 3.38 7.21 -2.91 -0.02 3.35 16 14 C 0.00 0.03 5.46 84.66 0.46 0.49 16 15 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 16 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 17 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 21 H 0.03 1.34 6.51 -2.39 -0.02 1.33 16 22 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.35 7.21 9.04 -89.69 -0.81 6.40 16 26 H 0.33 9.57 5.60 -89.70 -0.50 9.07 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.01 0.41 6.84 -2.39 -0.02 0.39 16 30 H 0.06 2.43 6.79 -2.39 -0.02 2.41 16 31 H 0.02 1.11 5.75 -2.38 -0.01 1.09 16 32 H -0.05 -2.84 8.11 -2.39 -0.02 -2.86 16 33 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -63.43 254.30 -0.66 -64.08 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.22 Total: 15.80 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 2.71 Total: -20.36 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -5.18 Total: -106.42 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -63.43 -0.66 -64.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168959363.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.911 kcal (2) G-P(sol) polarization free energy of solvation -63.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds