Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.46115 * 2 1 4 4 C 1.53039 * 109.46021 * 240.02621 * 2 1 3 5 5 C 1.53118 * 109.28077 * 180.80229 * 4 2 1 6 6 H 1.08997 * 109.52435 * 177.55836 * 5 4 2 7 7 N 1.46905 * 109.51978 * 297.75076 * 5 4 2 8 8 C 1.53122 * 109.15934 * 57.65010 * 5 4 2 9 9 C 1.53029 * 109.31360 * 302.32931 * 8 5 4 10 10 N 1.46838 * 109.46674 * 119.97220 * 2 1 3 11 11 C 1.46902 * 111.00075 * 305.85531 * 10 2 1 12 12 C 1.50699 * 109.46815 * 295.43746 * 11 10 2 13 13 H 1.08000 * 120.00230 * 5.04843 * 12 11 10 14 14 C 1.37885 * 119.99960 * 185.04161 * 12 11 10 15 15 N 1.31518 * 119.99540 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00019 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47432 * 90.00179 * 16 14 12 18 18 H 1.48501 * 109.46933 * 210.00215 * 16 14 12 19 19 H 1.48502 * 109.47115 * 329.99820 * 16 14 12 20 20 H 1.08999 * 109.47307 * 186.59164 * 1 2 3 21 21 H 1.09001 * 109.47036 * 306.58437 * 1 2 3 22 22 H 1.08999 * 109.47637 * 66.58466 * 1 2 3 23 23 H 1.09000 * 109.50184 * 60.86394 * 4 2 1 24 24 H 1.08999 * 109.53356 * 300.76365 * 4 2 1 25 25 H 1.00901 * 110.99798 * 179.68128 * 7 5 4 26 26 H 1.00892 * 110.99983 * 303.63219 * 7 5 4 27 27 H 1.08998 * 109.50084 * 62.29378 * 8 5 4 28 28 H 1.09001 * 109.50181 * 182.36412 * 8 5 4 29 29 H 1.08999 * 109.46715 * 179.21397 * 9 8 5 30 30 H 1.09004 * 109.46471 * 299.18163 * 9 8 5 31 31 H 1.08996 * 109.47172 * 55.43756 * 11 10 2 32 32 H 1.09001 * 109.46982 * 175.43993 * 11 10 2 33 33 H 0.96999 * 119.99227 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5708 -0.7361 -1.2358 6 1 3.9377 -1.2863 -2.1021 7 7 4.0758 0.6428 -1.2784 8 6 4.0547 -1.4187 0.0466 9 6 3.4873 -0.6779 1.2595 10 7 2.0193 -0.6916 1.1993 11 6 1.4373 -0.1105 2.4165 12 6 1.9082 1.3130 2.5681 13 1 2.5065 1.7694 1.7933 14 6 1.5751 2.0329 3.6959 15 7 0.8469 1.4771 4.6396 16 14 2.1582 3.7976 3.8835 17 1 1.1483 4.7172 3.3010 18 1 2.3383 4.1088 5.3244 19 1 3.4517 3.9696 3.1746 20 1 -0.3634 -1.0208 0.1180 21 1 -0.3633 0.6125 0.8252 22 1 -0.3634 0.4084 -0.9430 23 1 1.6893 -0.1982 -2.1399 24 1 1.6658 -1.7447 -1.2583 25 1 5.0846 0.6590 -1.2647 26 1 3.7172 1.1344 -2.0832 27 1 3.7125 -2.4535 0.0594 28 1 5.1439 -1.3952 0.0826 29 1 3.8189 -1.1702 2.1737 30 1 3.8412 0.3531 1.2535 31 1 0.3500 -0.1276 2.3433 32 1 1.7525 -0.6916 3.2831 33 1 0.6123 1.9837 5.4328 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168959450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = -6.717255 kcal Electronic energy + Delta-G solvation = -13569.420887 eV Core-core repulsion = 11436.354298 eV Total energy + Delta-G solvation = -2133.066589 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.67688 -34.65388 -32.36594 -31.45088 -29.50462 -26.47874 -25.95031 -23.32878 -21.58280 -20.06216 -18.44223 -16.08053 -15.46580 -15.15142 -14.49717 -14.42512 -14.03256 -13.49469 -12.72966 -12.50781 -11.89070 -11.52021 -11.20890 -11.19403 -11.05800 -10.97747 -10.58546 -10.36482 -10.20669 -9.87591 -9.63617 -9.56199 -9.25590 -8.31794 -8.28275 -6.90729 -5.89708 -3.97607 3.34749 3.41178 3.45913 4.51210 4.78697 5.19637 5.25433 5.35432 5.40093 5.59589 5.89191 6.09075 6.17352 6.22136 6.32539 6.37819 6.45975 6.49473 6.66274 6.82142 7.06215 7.11795 7.26605 7.46090 7.48102 7.70186 7.72337 8.05118 8.28471 8.48381 8.54840 9.15287 9.68406 11.14543 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039140 B = 0.011734 C = 0.010935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.208890 B = 2385.752001 C = 2560.071532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.096 3.904 3 H 0.057 0.943 4 C -0.105 4.105 5 C 0.093 3.907 6 H 0.021 0.979 7 N -0.838 5.838 8 C -0.110 4.110 9 C 0.073 3.927 10 N -0.539 5.539 11 C 0.183 3.817 12 C -0.539 4.539 13 H 0.061 0.939 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.275 1.275 20 H 0.049 0.951 21 H 0.067 0.933 22 H 0.039 0.961 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.335 0.665 26 H 0.335 0.665 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.222 -3.347 -10.837 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.013 4.013 3 H 0.075 0.925 4 C -0.144 4.144 5 C -0.018 4.018 6 H 0.039 0.961 7 N -0.368 5.368 8 C -0.149 4.149 9 C -0.056 4.056 10 N -0.264 5.264 11 C 0.058 3.942 12 C -0.578 4.578 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.535 5.535 16 Si 0.715 3.285 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.200 1.200 20 H 0.068 0.932 21 H 0.086 0.914 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.598 -3.730 -9.989 11.253 hybrid contribution 1.019 1.626 -0.619 2.016 sum 4.617 -2.104 -10.608 11.759 Atomic orbital electron populations 1.21851 0.96007 1.01433 1.00735 1.21204 0.93752 0.96866 0.89436 0.92526 1.21706 0.93648 1.00885 0.98121 1.21354 0.95825 0.88454 0.96217 0.96094 1.58644 1.13232 1.15795 1.49110 1.21664 0.98662 0.99285 0.95240 1.21696 0.89375 0.99503 0.95028 1.62491 1.06019 1.54228 1.03618 1.19787 0.95359 0.92599 0.86476 1.21844 1.32937 0.98955 1.04059 0.92100 1.24967 0.95182 0.97946 0.95898 1.69958 1.37959 1.36795 1.08769 0.86679 0.79207 0.85621 0.77018 1.20827 1.21393 1.19952 0.93218 0.91377 0.94187 0.93061 0.91716 0.85316 0.85300 0.91813 0.93025 0.92673 0.92937 0.95003 0.95310 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.53 37.15 0.32 -2.42 16 2 C 0.10 1.93 1.95 -67.73 -0.13 1.80 16 3 H 0.06 1.29 6.39 -51.93 -0.33 0.95 16 4 C -0.11 -1.70 5.01 -26.65 -0.13 -1.83 16 5 C 0.09 1.38 3.60 -67.59 -0.24 1.13 16 6 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 7 N -0.84 -12.02 7.93 -4.56 -0.04 -12.05 16 8 C -0.11 -1.79 5.76 -26.65 -0.15 -1.94 16 9 C 0.07 1.50 4.90 -3.79 -0.02 1.48 16 10 N -0.54 -11.96 4.69 -228.06 -1.07 -13.03 16 11 C 0.18 4.85 4.72 -4.98 -0.02 4.83 16 12 C -0.54 -15.16 7.72 -34.44 -0.27 -15.42 16 13 H 0.06 1.74 5.86 -52.49 -0.31 1.43 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 16 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 20 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 21 H 0.07 1.49 6.63 -51.93 -0.34 1.15 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.33 4.18 9.04 -39.29 -0.36 3.83 16 26 H 0.33 4.21 9.00 -39.30 -0.35 3.86 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 1.17 8.12 -51.93 -0.42 0.75 16 30 H 0.05 1.20 6.29 -51.93 -0.33 0.87 16 31 H 0.03 0.89 6.09 -51.93 -0.32 0.57 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 255.27 15.07 3.85 3.85 Total: -1.00 -29.83 255.27 -7.57 -37.40 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.27 Total: 3.66 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.75 Total: -10.71 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.37 Total: -51.24 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.83 -7.57 -37.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168959450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.680 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds