Wall clock time and date at job start Mon Mar 30 2020 02:53:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08999 * 109.47269 * 2 1
4 4 C 1.50704 * 109.47142 * 120.00138 * 2 1 3
5 5 H 1.07998 * 119.99983 * 119.99941 * 4 2 1
6 6 C 1.37878 * 119.99952 * 299.99563 * 4 2 1
7 7 N 1.31510 * 119.99576 * 180.02562 * 6 4 2
8 8 Si 1.86797 * 119.99926 * 359.97438 * 6 4 2
9 9 H 1.48511 * 109.46845 * 90.00316 * 8 6 4
10 10 H 1.48496 * 109.47217 * 209.99736 * 8 6 4
11 11 H 1.48491 * 109.47380 * 330.00506 * 8 6 4
12 12 N 1.46901 * 109.46921 * 239.99779 * 2 1 3
13 13 C 1.46847 * 111.00144 * 306.04923 * 12 2 1
14 14 C 1.53044 * 109.51335 * 185.83239 * 13 12 2
15 15 C 1.53117 * 109.27792 * 300.82256 * 14 13 12
16 16 C 1.53127 * 109.15989 * 57.65607 * 15 14 13
17 17 H 1.08997 * 109.50037 * 62.28538 * 16 15 14
18 18 N 1.46901 * 109.50334 * 182.40361 * 16 15 14
19 19 C 1.46830 * 110.98168 * 70.26342 * 12 2 1
20 20 H 1.09005 * 109.46675 * 299.99780 * 1 2 3
21 21 H 1.08996 * 109.47319 * 59.99896 * 1 2 3
22 22 H 1.09004 * 109.47273 * 180.02562 * 1 2 3
23 23 H 0.97010 * 119.99820 * 179.97438 * 7 6 4
24 24 H 1.09002 * 109.46448 * 65.81961 * 13 12 2
25 25 H 1.08994 * 109.45958 * 305.84326 * 13 12 2
26 26 H 1.09001 * 109.49858 * 60.76701 * 14 13 12
27 27 H 1.09002 * 109.49779 * 180.84687 * 14 13 12
28 28 H 1.08997 * 109.52073 * 177.56286 * 15 14 13
29 29 H 1.09004 * 109.52347 * 297.75632 * 15 14 13
30 30 H 1.00900 * 110.99983 * 300.00416 * 18 16 15
31 31 H 1.00900 * 110.99445 * 63.94882 * 18 16 15
32 32 H 1.08995 * 109.46742 * 54.13906 * 19 12 2
33 33 H 1.09004 * 109.46459 * 294.16736 * 19 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 1.2305
5 1 2.6533 -1.5885 1.1314
6 6 1.6993 -0.2394 2.4828
7 7 2.1382 -0.8591 3.5565
8 14 0.6261 1.2799 2.6541
9 1 -0.8019 0.8746 2.6994
10 1 0.9774 1.9954 3.9070
11 1 0.8493 2.1773 1.4923
12 7 2.0196 -0.6926 -1.1994
13 6 1.4344 -2.0350 -1.3078
14 6 2.0743 -2.7784 -2.4826
15 6 1.8316 -1.9896 -3.7724
16 6 2.4079 -0.5797 -3.6152
17 1 3.4852 -0.6419 -3.4619
18 7 2.1285 0.2022 -4.8270
19 6 1.7584 0.0999 -2.4076
20 1 -0.3633 0.5138 0.8901
21 1 -0.3634 0.5138 -0.8899
22 1 -0.3634 -1.0277 0.0005
23 1 1.9042 -0.5275 4.4376
24 1 0.3603 -1.9507 -1.4730
25 1 1.6178 -2.5866 -0.3857
26 1 3.1464 -2.8751 -2.3113
27 1 1.6291 -3.7693 -2.5721
28 1 2.3227 -2.4932 -4.6050
29 1 0.7605 -1.9260 -3.9644
30 1 2.5445 -0.2284 -5.6392
31 1 1.1356 0.3297 -4.9541
32 1 2.1769 1.0988 -2.2844
33 1 0.6827 0.1742 -2.5677
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000217532426.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:53:59
Heat of formation + Delta-G solvation = 2.643120 kcal
Electronic energy + Delta-G solvation = -13449.562716 eV
Core-core repulsion = 11316.902024 eV
Total energy + Delta-G solvation = -2132.660692 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 198.143 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-38.88377 -35.30353 -32.69889 -31.76751 -29.32391 -27.58057 -25.23726 -23.62899
-22.05078 -20.20976 -18.95430 -16.51445 -15.88714 -15.43921 -14.63983 -14.13581
-13.91965 -13.59472 -13.19254 -12.93286 -12.63273 -12.21158 -11.89738 -11.61081
-11.21150 -10.77072 -10.72829 -10.54821 -10.34741 -10.05224 -9.77966 -9.47264
-9.01915 -8.57222 -8.55004 -7.30422 -6.04871 -4.02551 3.26777 3.37970
3.39915 4.41311 4.47536 4.92910 5.09975 5.20505 5.27748 5.42639
5.61822 5.80841 5.87404 6.04746 6.13559 6.16335 6.20582 6.29607
6.37676 6.45167 6.53408 6.65692 6.76230 6.89204 7.18150 7.26296
7.49262 7.67124 7.98471 8.13073 8.68855 9.03116 9.57616 11.08274
Molecular weight = 198.14amu
Principal moments of inertia in cm(-1)
A = 0.053583 B = 0.010617 C = 0.009618
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 522.430188 B = 2636.744325 C = 2910.585052
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.182 3.818
3 H 0.040 0.960
4 C -0.500 4.500
5 H 0.082 0.918
6 C 0.069 3.931
7 N -0.900 5.900
8 Si 0.886 3.114
9 H -0.281 1.281
10 H -0.297 1.297
11 H -0.268 1.268
12 N -0.518 5.518
13 C 0.059 3.941
14 C -0.115 4.115
15 C -0.150 4.150
16 C 0.092 3.908
17 H 0.088 0.912
18 N -0.845 5.845
19 C 0.061 3.939
20 H 0.044 0.956
21 H 0.027 0.973
22 H 0.055 0.945
23 H 0.263 0.737
24 H 0.023 0.977
25 H 0.089 0.911
26 H 0.069 0.931
27 H 0.057 0.943
28 H 0.054 0.946
29 H 0.052 0.948
30 H 0.337 0.663
31 H 0.335 0.665
32 H 0.073 0.927
33 H 0.021 0.979
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.744 -0.570 -13.272 13.564
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.244 4.244
2 C 0.075 3.925
3 H 0.057 0.943
4 C -0.538 4.538
5 H 0.100 0.900
6 C -0.133 4.133
7 N -0.539 5.539
8 Si 0.717 3.283
9 H -0.209 1.209
10 H -0.224 1.224
11 H -0.193 1.193
12 N -0.242 5.242
13 C -0.069 4.069
14 C -0.153 4.153
15 C -0.190 4.190
16 C -0.019 4.019
17 H 0.106 0.894
18 N -0.373 5.373
19 C -0.068 4.068
20 H 0.063 0.937
21 H 0.046 0.954
22 H 0.074 0.926
23 H 0.073 0.927
24 H 0.041 0.959
25 H 0.107 0.893
26 H 0.088 0.912
27 H 0.076 0.924
28 H 0.073 0.927
29 H 0.071 0.929
30 H 0.150 0.850
31 H 0.147 0.853
32 H 0.092 0.908
33 H 0.039 0.961
Dipole moment (debyes) X Y Z Total
from point charges -1.805 -0.020 -12.664 12.792
hybrid contribution -2.140 0.013 -0.167 2.147
sum -3.946 -0.007 -12.831 13.424
Atomic orbital electron populations
1.22820 1.01801 1.00936 0.98841 1.19766 0.88630 0.95280 0.88868
0.94261 1.20938 1.31384 1.13736 0.87759 0.90003 1.24917 0.95928
0.96586 0.95843 1.69882 1.45810 1.40366 0.97843 0.86888 0.80471
0.84006 0.76947 1.20869 1.22416 1.19334 1.61993 1.58779 1.01960
1.01476 1.22025 0.95129 0.91082 0.98629 1.21569 1.01944 0.97630
0.94169 1.22415 1.00337 0.97886 0.98342 1.21504 1.00922 0.89760
0.89728 0.89421 1.58881 1.18133 1.54840 1.05453 1.21985 0.97012
0.97599 0.90171 0.93728 0.95376 0.92592 0.92674 0.95931 0.89280
0.91216 0.92389 0.92739 0.92896 0.85045 0.85319 0.90841 0.96072
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -4.10 7.92 37.16 0.29 -3.80 16
2 C 0.18 4.36 1.90 -68.86 -0.13 4.23 16
3 H 0.04 0.99 7.04 -51.93 -0.37 0.62 16
4 C -0.50 -14.00 8.46 -34.44 -0.29 -14.30 16
5 H 0.08 2.50 7.38 -52.49 -0.39 2.11 16
6 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16
7 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16
8 Si 0.89 22.11 24.37 -169.99 -4.14 17.97 16
9 H -0.28 -6.86 6.87 56.52 0.39 -6.48 16
10 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16
11 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16
12 N -0.52 -10.78 4.59 -228.09 -1.05 -11.83 16
13 C 0.06 1.13 4.54 -3.83 -0.02 1.11 16
14 C -0.11 -1.75 6.09 -26.65 -0.16 -1.91 16
15 C -0.15 -2.00 5.57 -26.61 -0.15 -2.15 16
16 C 0.09 1.35 3.41 -67.63 -0.23 1.12 16
17 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16
18 N -0.85 -10.26 9.26 -4.59 -0.04 -10.30 16
19 C 0.06 1.09 4.68 -3.84 -0.02 1.07 16
20 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16
21 H 0.03 0.55 6.82 -51.93 -0.35 0.19 16
22 H 0.06 1.21 6.46 -51.93 -0.34 0.87 16
23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
24 H 0.02 0.42 6.58 -51.93 -0.34 0.08 16
25 H 0.09 1.91 6.72 -51.93 -0.35 1.56 16
26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
30 H 0.34 3.37 9.04 -39.29 -0.36 3.01 16
31 H 0.33 3.72 8.98 -39.29 -0.35 3.37 16
32 H 0.07 1.36 8.01 -51.93 -0.42 0.95 16
33 H 0.02 0.37 6.88 -51.93 -0.36 0.01 16
LS Contribution 246.91 15.07 3.72 3.72
Total: -1.00 -29.55 246.91 -6.62 -36.17
By element:
Atomic # 1 Polarization: 8.87 SS G_CDS: -5.08 Total: 3.79 kcal
Atomic # 6 Polarization: -11.95 SS G_CDS: -0.80 Total: -12.75 kcal
Atomic # 7 Polarization: -48.57 SS G_CDS: -0.32 Total: -48.89 kcal
Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal
Total LS contribution 3.72 Total: 3.72 kcal
Total: -29.55 -6.62 -36.17 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000217532426.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.812 kcal
(2) G-P(sol) polarization free energy of solvation -29.550 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.262 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.169 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.643 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds