Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 C 1.50704 * 109.47142 * 120.00138 * 2 1 3 5 5 H 1.07998 * 119.99983 * 119.99941 * 4 2 1 6 6 C 1.37878 * 119.99952 * 299.99563 * 4 2 1 7 7 N 1.31510 * 119.99576 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99926 * 359.97438 * 6 4 2 9 9 H 1.48511 * 109.46845 * 90.00316 * 8 6 4 10 10 H 1.48496 * 109.47217 * 209.99736 * 8 6 4 11 11 H 1.48491 * 109.47380 * 330.00506 * 8 6 4 12 12 N 1.46901 * 109.46921 * 239.99779 * 2 1 3 13 13 C 1.46847 * 111.00144 * 306.04923 * 12 2 1 14 14 C 1.53044 * 109.51335 * 185.83239 * 13 12 2 15 15 C 1.53117 * 109.27792 * 300.82256 * 14 13 12 16 16 C 1.53127 * 109.15989 * 57.65607 * 15 14 13 17 17 H 1.08997 * 109.50037 * 62.28538 * 16 15 14 18 18 N 1.46901 * 109.50334 * 182.40361 * 16 15 14 19 19 C 1.46830 * 110.98168 * 70.26342 * 12 2 1 20 20 H 1.09005 * 109.46675 * 299.99780 * 1 2 3 21 21 H 1.08996 * 109.47319 * 59.99896 * 1 2 3 22 22 H 1.09004 * 109.47273 * 180.02562 * 1 2 3 23 23 H 0.97010 * 119.99820 * 179.97438 * 7 6 4 24 24 H 1.09002 * 109.46448 * 65.81961 * 13 12 2 25 25 H 1.08994 * 109.45958 * 305.84326 * 13 12 2 26 26 H 1.09001 * 109.49858 * 60.76701 * 14 13 12 27 27 H 1.09002 * 109.49779 * 180.84687 * 14 13 12 28 28 H 1.08997 * 109.52073 * 177.56286 * 15 14 13 29 29 H 1.09004 * 109.52347 * 297.75632 * 15 14 13 30 30 H 1.00900 * 110.99983 * 300.00416 * 18 16 15 31 31 H 1.00900 * 110.99445 * 63.94882 * 18 16 15 32 32 H 1.08995 * 109.46742 * 54.13906 * 19 12 2 33 33 H 1.09004 * 109.46459 * 294.16736 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2799 2.6541 9 1 -0.8019 0.8746 2.6994 10 1 0.9774 1.9954 3.9070 11 1 0.8493 2.1773 1.4923 12 7 2.0196 -0.6926 -1.1994 13 6 1.4344 -2.0350 -1.3078 14 6 2.0743 -2.7784 -2.4826 15 6 1.8316 -1.9896 -3.7724 16 6 2.4079 -0.5797 -3.6152 17 1 3.4852 -0.6419 -3.4619 18 7 2.1285 0.2022 -4.8270 19 6 1.7584 0.0999 -2.4076 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.9042 -0.5275 4.4376 24 1 0.3603 -1.9507 -1.4730 25 1 1.6178 -2.5866 -0.3857 26 1 3.1464 -2.8751 -2.3113 27 1 1.6291 -3.7693 -2.5721 28 1 2.3227 -2.4932 -4.6050 29 1 0.7605 -1.9260 -3.9644 30 1 2.5445 -0.2284 -5.6392 31 1 1.1356 0.3297 -4.9541 32 1 2.1769 1.0988 -2.2844 33 1 0.6827 0.1742 -2.5677 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217532426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = 2.643120 kcal Electronic energy + Delta-G solvation = -13449.562716 eV Core-core repulsion = 11316.902024 eV Total energy + Delta-G solvation = -2132.660692 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.88377 -35.30353 -32.69889 -31.76751 -29.32391 -27.58057 -25.23726 -23.62899 -22.05078 -20.20976 -18.95430 -16.51445 -15.88714 -15.43921 -14.63983 -14.13581 -13.91965 -13.59472 -13.19254 -12.93286 -12.63273 -12.21158 -11.89738 -11.61081 -11.21150 -10.77072 -10.72829 -10.54821 -10.34741 -10.05224 -9.77966 -9.47264 -9.01915 -8.57222 -8.55004 -7.30422 -6.04871 -4.02551 3.26777 3.37970 3.39915 4.41311 4.47536 4.92910 5.09975 5.20505 5.27748 5.42639 5.61822 5.80841 5.87404 6.04746 6.13559 6.16335 6.20582 6.29607 6.37676 6.45167 6.53408 6.65692 6.76230 6.89204 7.18150 7.26296 7.49262 7.67124 7.98471 8.13073 8.68855 9.03116 9.57616 11.08274 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053583 B = 0.010617 C = 0.009618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.430188 B = 2636.744325 C = 2910.585052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.182 3.818 3 H 0.040 0.960 4 C -0.500 4.500 5 H 0.082 0.918 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.518 5.518 13 C 0.059 3.941 14 C -0.115 4.115 15 C -0.150 4.150 16 C 0.092 3.908 17 H 0.088 0.912 18 N -0.845 5.845 19 C 0.061 3.939 20 H 0.044 0.956 21 H 0.027 0.973 22 H 0.055 0.945 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.337 0.663 31 H 0.335 0.665 32 H 0.073 0.927 33 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 -0.570 -13.272 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.075 3.925 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.242 5.242 13 C -0.069 4.069 14 C -0.153 4.153 15 C -0.190 4.190 16 C -0.019 4.019 17 H 0.106 0.894 18 N -0.373 5.373 19 C -0.068 4.068 20 H 0.063 0.937 21 H 0.046 0.954 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.092 0.908 33 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.805 -0.020 -12.664 12.792 hybrid contribution -2.140 0.013 -0.167 2.147 sum -3.946 -0.007 -12.831 13.424 Atomic orbital electron populations 1.22820 1.01801 1.00936 0.98841 1.19766 0.88630 0.95280 0.88868 0.94261 1.20938 1.31384 1.13736 0.87759 0.90003 1.24917 0.95928 0.96586 0.95843 1.69882 1.45810 1.40366 0.97843 0.86888 0.80471 0.84006 0.76947 1.20869 1.22416 1.19334 1.61993 1.58779 1.01960 1.01476 1.22025 0.95129 0.91082 0.98629 1.21569 1.01944 0.97630 0.94169 1.22415 1.00337 0.97886 0.98342 1.21504 1.00922 0.89760 0.89728 0.89421 1.58881 1.18133 1.54840 1.05453 1.21985 0.97012 0.97599 0.90171 0.93728 0.95376 0.92592 0.92674 0.95931 0.89280 0.91216 0.92389 0.92739 0.92896 0.85045 0.85319 0.90841 0.96072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.10 7.92 37.16 0.29 -3.80 16 2 C 0.18 4.36 1.90 -68.86 -0.13 4.23 16 3 H 0.04 0.99 7.04 -51.93 -0.37 0.62 16 4 C -0.50 -14.00 8.46 -34.44 -0.29 -14.30 16 5 H 0.08 2.50 7.38 -52.49 -0.39 2.11 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 8 Si 0.89 22.11 24.37 -169.99 -4.14 17.97 16 9 H -0.28 -6.86 6.87 56.52 0.39 -6.48 16 10 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 12 N -0.52 -10.78 4.59 -228.09 -1.05 -11.83 16 13 C 0.06 1.13 4.54 -3.83 -0.02 1.11 16 14 C -0.11 -1.75 6.09 -26.65 -0.16 -1.91 16 15 C -0.15 -2.00 5.57 -26.61 -0.15 -2.15 16 16 C 0.09 1.35 3.41 -67.63 -0.23 1.12 16 17 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 18 N -0.85 -10.26 9.26 -4.59 -0.04 -10.30 16 19 C 0.06 1.09 4.68 -3.84 -0.02 1.07 16 20 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 21 H 0.03 0.55 6.82 -51.93 -0.35 0.19 16 22 H 0.06 1.21 6.46 -51.93 -0.34 0.87 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.02 0.42 6.58 -51.93 -0.34 0.08 16 25 H 0.09 1.91 6.72 -51.93 -0.35 1.56 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.34 3.37 9.04 -39.29 -0.36 3.01 16 31 H 0.33 3.72 8.98 -39.29 -0.35 3.37 16 32 H 0.07 1.36 8.01 -51.93 -0.42 0.95 16 33 H 0.02 0.37 6.88 -51.93 -0.36 0.01 16 LS Contribution 246.91 15.07 3.72 3.72 Total: -1.00 -29.55 246.91 -6.62 -36.17 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.08 Total: 3.79 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.80 Total: -12.75 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.32 Total: -48.89 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.55 -6.62 -36.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217532426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.812 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds