Wall clock time and date at job start Mon Mar 30 2020 02:53:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08999 * 109.47269 * 2 1
4 4 C 1.50704 * 109.47142 * 120.00138 * 2 1 3
5 5 H 1.07998 * 119.99983 * 119.99941 * 4 2 1
6 6 C 1.37878 * 119.99952 * 299.99563 * 4 2 1
7 7 N 1.31510 * 119.99576 * 180.02562 * 6 4 2
8 8 Si 1.86797 * 119.99926 * 359.97438 * 6 4 2
9 9 H 1.48511 * 109.46845 * 90.00316 * 8 6 4
10 10 H 1.48496 * 109.47217 * 209.99736 * 8 6 4
11 11 H 1.48491 * 109.47380 * 330.00506 * 8 6 4
12 12 N 1.46901 * 109.46921 * 239.99779 * 2 1 3
13 13 C 1.46847 * 111.00144 * 306.04923 * 12 2 1
14 14 C 1.53044 * 109.51335 * 185.83239 * 13 12 2
15 15 C 1.53117 * 109.27792 * 300.82256 * 14 13 12
16 16 C 1.53127 * 109.15989 * 57.65607 * 15 14 13
17 17 H 1.08997 * 109.50037 * 62.28538 * 16 15 14
18 18 N 1.46901 * 109.50334 * 182.40361 * 16 15 14
19 19 C 1.46830 * 110.98168 * 70.26342 * 12 2 1
20 20 H 1.09005 * 109.46675 * 299.99780 * 1 2 3
21 21 H 1.08996 * 109.47319 * 59.99896 * 1 2 3
22 22 H 1.09004 * 109.47273 * 180.02562 * 1 2 3
23 23 H 0.97010 * 119.99820 * 179.97438 * 7 6 4
24 24 H 1.09002 * 109.46448 * 65.81961 * 13 12 2
25 25 H 1.08994 * 109.45958 * 305.84326 * 13 12 2
26 26 H 1.09001 * 109.49858 * 60.76701 * 14 13 12
27 27 H 1.09002 * 109.49779 * 180.84687 * 14 13 12
28 28 H 1.08997 * 109.52073 * 177.56286 * 15 14 13
29 29 H 1.09004 * 109.52347 * 297.75632 * 15 14 13
30 30 H 1.00900 * 110.99983 * 300.00416 * 18 16 15
31 31 H 1.00900 * 110.99445 * 63.94882 * 18 16 15
32 32 H 1.08995 * 109.46742 * 54.13906 * 19 12 2
33 33 H 1.09004 * 109.46459 * 294.16736 * 19 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 1.2305
5 1 2.6533 -1.5885 1.1314
6 6 1.6993 -0.2394 2.4828
7 7 2.1382 -0.8591 3.5565
8 14 0.6261 1.2799 2.6541
9 1 -0.8019 0.8746 2.6994
10 1 0.9774 1.9954 3.9070
11 1 0.8493 2.1773 1.4923
12 7 2.0196 -0.6926 -1.1994
13 6 1.4344 -2.0350 -1.3078
14 6 2.0743 -2.7784 -2.4826
15 6 1.8316 -1.9896 -3.7724
16 6 2.4079 -0.5797 -3.6152
17 1 3.4852 -0.6419 -3.4619
18 7 2.1285 0.2022 -4.8270
19 6 1.7584 0.0999 -2.4076
20 1 -0.3633 0.5138 0.8901
21 1 -0.3634 0.5138 -0.8899
22 1 -0.3634 -1.0277 0.0005
23 1 1.9042 -0.5275 4.4376
24 1 0.3603 -1.9507 -1.4730
25 1 1.6178 -2.5866 -0.3857
26 1 3.1464 -2.8751 -2.3113
27 1 1.6291 -3.7693 -2.5721
28 1 2.3227 -2.4932 -4.6050
29 1 0.7605 -1.9260 -3.9644
30 1 2.5445 -0.2284 -5.6392
31 1 1.1356 0.3297 -4.9541
32 1 2.1769 1.0988 -2.2844
33 1 0.6827 0.1742 -2.5677
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000217532426.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:53:59
Heat of formation + Delta-G solvation = -21.168719 kcal
Electronic energy + Delta-G solvation = -13450.595275 eV
Core-core repulsion = 11316.902024 eV
Total energy + Delta-G solvation = -2133.693251 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 198.143 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-40.33727 -36.80925 -34.48614 -33.34025 -31.00845 -28.85111 -27.24152 -25.19757
-23.38487 -21.81129 -20.43024 -18.59583 -17.35463 -16.81771 -16.35665 -15.56008
-15.41623 -14.96845 -14.84278 -14.47685 -14.16716 -13.97384 -13.37685 -13.18384
-12.99503 -12.56972 -12.17836 -12.04653 -11.79093 -11.68279 -11.47693 -11.21009
-11.01613 -10.75308 -9.54639 -8.92572 -8.28092 -6.30339 1.28255 1.34942
1.44757 2.31403 3.04757 3.12325 3.76812 3.90560 4.00767 4.18082
4.31228 4.42474 4.44743 4.52321 4.62992 4.71057 4.74974 4.85997
4.94232 5.01799 5.10994 5.17872 5.28515 5.38305 5.47473 5.63582
6.05522 6.25678 6.46321 6.65167 6.74183 6.76574 7.34170 8.88811
Molecular weight = 198.14amu
Principal moments of inertia in cm(-1)
A = 0.053583 B = 0.010617 C = 0.009618
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 522.430188 B = 2636.744325 C = 2910.585052
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.184 3.816
3 H 0.030 0.970
4 C -0.500 4.500
5 H 0.038 0.962
6 C 0.011 3.989
7 N -0.949 5.949
8 Si 0.950 3.050
9 H -0.268 1.268
10 H -0.297 1.297
11 H -0.251 1.251
12 N -0.536 5.536
13 C 0.062 3.938
14 C -0.110 4.110
15 C -0.140 4.140
16 C 0.101 3.899
17 H 0.073 0.927
18 N -0.845 5.845
19 C 0.062 3.938
20 H 0.036 0.964
21 H 0.057 0.943
22 H 0.054 0.946
23 H 0.265 0.735
24 H 0.029 0.971
25 H 0.050 0.950
26 H 0.059 0.941
27 H 0.078 0.922
28 H 0.081 0.919
29 H 0.063 0.937
30 H 0.353 0.647
31 H 0.344 0.656
32 H 0.061 0.939
33 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.089 0.253 -15.700 16.225
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.076 3.924
3 H 0.048 0.952
4 C -0.539 4.539
5 H 0.057 0.943
6 C -0.186 4.186
7 N -0.590 5.590
8 Si 0.777 3.223
9 H -0.194 1.194
10 H -0.225 1.225
11 H -0.175 1.175
12 N -0.260 5.260
13 C -0.066 4.066
14 C -0.148 4.148
15 C -0.180 4.180
16 C -0.011 4.011
17 H 0.092 0.908
18 N -0.375 5.375
19 C -0.066 4.066
20 H 0.055 0.945
21 H 0.076 0.924
22 H 0.073 0.927
23 H 0.074 0.926
24 H 0.047 0.953
25 H 0.069 0.931
26 H 0.077 0.923
27 H 0.097 0.903
28 H 0.100 0.900
29 H 0.082 0.918
30 H 0.167 0.833
31 H 0.157 0.843
32 H 0.080 0.920
33 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -3.153 0.797 -15.140 15.485
hybrid contribution -1.641 -0.314 0.553 1.760
sum -4.794 0.483 -14.587 15.362
Atomic orbital electron populations
1.22670 0.99911 1.01248 0.99832 1.19554 0.89982 0.94262 0.88639
0.95214 1.21159 1.30330 1.12471 0.89933 0.94328 1.25761 0.97525
0.99919 0.95387 1.70035 1.47877 1.42537 0.98512 0.85846 0.79016
0.80169 0.77273 1.19420 1.22493 1.17544 1.61874 1.59425 1.02883
1.01808 1.21978 0.95800 0.90171 0.98676 1.21528 1.01058 0.98528
0.93697 1.22349 1.01212 0.96654 0.97764 1.21274 0.99787 0.90546
0.89470 0.90848 1.58767 1.19085 1.54506 1.05142 1.22019 0.97768
0.96909 0.89910 0.94515 0.92402 0.92694 0.92569 0.95284 0.93099
0.92255 0.90302 0.90048 0.91838 0.83258 0.84265 0.92003 0.95186
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -7.53 7.92 71.98 0.57 -6.96 16
2 C 0.18 8.77 1.90 44.17 0.08 8.85 16
3 H 0.03 1.48 7.04 -2.39 -0.02 1.46 16
4 C -0.50 -28.94 8.46 25.60 0.22 -28.73 16
5 H 0.04 2.50 7.38 -2.91 -0.02 2.48 16
6 C 0.01 0.65 5.45 84.66 0.46 1.11 16
7 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16
8 Si 0.95 45.53 24.37 68.60 1.67 47.20 16
9 H -0.27 -12.20 6.87 99.48 0.68 -11.52 16
10 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16
11 H -0.25 -11.27 6.53 99.48 0.65 -10.62 16
12 N -0.54 -22.10 4.59 -875.54 -4.02 -26.12 16
13 C 0.06 2.32 4.54 86.33 0.39 2.71 16
14 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16
15 C -0.14 -3.24 5.57 30.68 0.17 -3.07 16
16 C 0.10 2.68 3.41 44.97 0.15 2.83 16
17 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
18 N -0.84 -17.57 9.26 -168.45 -1.56 -19.13 16
19 C 0.06 2.09 4.68 86.33 0.40 2.49 16
20 H 0.04 1.60 3.27 -2.38 -0.01 1.59 16
21 H 0.06 2.09 6.82 -2.39 -0.02 2.07 16
22 H 0.05 2.30 6.46 -2.38 -0.02 2.29 16
23 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16
24 H 0.03 1.04 6.58 -2.39 -0.02 1.03 16
25 H 0.05 2.27 6.72 -2.39 -0.02 2.25 16
26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16
27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16
28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
29 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16
30 H 0.35 5.68 9.04 -89.69 -0.81 4.87 16
31 H 0.34 6.29 8.98 -89.69 -0.81 5.49 16
32 H 0.06 2.19 8.01 -2.39 -0.02 2.17 16
33 H 0.03 0.95 6.88 -2.38 -0.02 0.94 16
Total: -1.00 -65.16 246.91 -1.56 -66.72
By element:
Atomic # 1 Polarization: 15.27 SS G_CDS: -0.59 Total: 14.68 kcal
Atomic # 6 Polarization: -26.36 SS G_CDS: 2.64 Total: -23.72 kcal
Atomic # 7 Polarization: -99.60 SS G_CDS: -5.28 Total: -104.88 kcal
Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.20 kcal
Total: -65.16 -1.56 -66.72 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000217532426.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.555 kcal
(2) G-P(sol) polarization free energy of solvation -65.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.609 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.560 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.724 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.169 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds