Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 C 1.50704 * 109.47142 * 120.00138 * 2 1 3 5 5 H 1.07998 * 119.99983 * 119.99941 * 4 2 1 6 6 C 1.37878 * 119.99952 * 299.99563 * 4 2 1 7 7 N 1.31510 * 119.99576 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99926 * 359.97438 * 6 4 2 9 9 H 1.48511 * 109.46845 * 90.00316 * 8 6 4 10 10 H 1.48496 * 109.47217 * 209.99736 * 8 6 4 11 11 H 1.48491 * 109.47380 * 330.00506 * 8 6 4 12 12 N 1.46901 * 109.46921 * 239.99779 * 2 1 3 13 13 C 1.46847 * 111.00144 * 306.04923 * 12 2 1 14 14 C 1.53044 * 109.51335 * 185.83239 * 13 12 2 15 15 C 1.53117 * 109.27792 * 300.82256 * 14 13 12 16 16 C 1.53127 * 109.15989 * 57.65607 * 15 14 13 17 17 H 1.08997 * 109.50037 * 62.28538 * 16 15 14 18 18 N 1.46901 * 109.50334 * 182.40361 * 16 15 14 19 19 C 1.46830 * 110.98168 * 70.26342 * 12 2 1 20 20 H 1.09005 * 109.46675 * 299.99780 * 1 2 3 21 21 H 1.08996 * 109.47319 * 59.99896 * 1 2 3 22 22 H 1.09004 * 109.47273 * 180.02562 * 1 2 3 23 23 H 0.97010 * 119.99820 * 179.97438 * 7 6 4 24 24 H 1.09002 * 109.46448 * 65.81961 * 13 12 2 25 25 H 1.08994 * 109.45958 * 305.84326 * 13 12 2 26 26 H 1.09001 * 109.49858 * 60.76701 * 14 13 12 27 27 H 1.09002 * 109.49779 * 180.84687 * 14 13 12 28 28 H 1.08997 * 109.52073 * 177.56286 * 15 14 13 29 29 H 1.09004 * 109.52347 * 297.75632 * 15 14 13 30 30 H 1.00900 * 110.99983 * 300.00416 * 18 16 15 31 31 H 1.00900 * 110.99445 * 63.94882 * 18 16 15 32 32 H 1.08995 * 109.46742 * 54.13906 * 19 12 2 33 33 H 1.09004 * 109.46459 * 294.16736 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2799 2.6541 9 1 -0.8019 0.8746 2.6994 10 1 0.9774 1.9954 3.9070 11 1 0.8493 2.1773 1.4923 12 7 2.0196 -0.6926 -1.1994 13 6 1.4344 -2.0350 -1.3078 14 6 2.0743 -2.7784 -2.4826 15 6 1.8316 -1.9896 -3.7724 16 6 2.4079 -0.5797 -3.6152 17 1 3.4852 -0.6419 -3.4619 18 7 2.1285 0.2022 -4.8270 19 6 1.7584 0.0999 -2.4076 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.9042 -0.5275 4.4376 24 1 0.3603 -1.9507 -1.4730 25 1 1.6178 -2.5866 -0.3857 26 1 3.1464 -2.8751 -2.3113 27 1 1.6291 -3.7693 -2.5721 28 1 2.3227 -2.4932 -4.6050 29 1 0.7605 -1.9260 -3.9644 30 1 2.5445 -0.2284 -5.6392 31 1 1.1356 0.3297 -4.9541 32 1 2.1769 1.0988 -2.2844 33 1 0.6827 0.1742 -2.5677 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217532426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = -21.168719 kcal Electronic energy + Delta-G solvation = -13450.595275 eV Core-core repulsion = 11316.902024 eV Total energy + Delta-G solvation = -2133.693251 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.33727 -36.80925 -34.48614 -33.34025 -31.00845 -28.85111 -27.24152 -25.19757 -23.38487 -21.81129 -20.43024 -18.59583 -17.35463 -16.81771 -16.35665 -15.56008 -15.41623 -14.96845 -14.84278 -14.47685 -14.16716 -13.97384 -13.37685 -13.18384 -12.99503 -12.56972 -12.17836 -12.04653 -11.79093 -11.68279 -11.47693 -11.21009 -11.01613 -10.75308 -9.54639 -8.92572 -8.28092 -6.30339 1.28255 1.34942 1.44757 2.31403 3.04757 3.12325 3.76812 3.90560 4.00767 4.18082 4.31228 4.42474 4.44743 4.52321 4.62992 4.71057 4.74974 4.85997 4.94232 5.01799 5.10994 5.17872 5.28515 5.38305 5.47473 5.63582 6.05522 6.25678 6.46321 6.65167 6.74183 6.76574 7.34170 8.88811 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053583 B = 0.010617 C = 0.009618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.430188 B = 2636.744325 C = 2910.585052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.184 3.816 3 H 0.030 0.970 4 C -0.500 4.500 5 H 0.038 0.962 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.297 1.297 11 H -0.251 1.251 12 N -0.536 5.536 13 C 0.062 3.938 14 C -0.110 4.110 15 C -0.140 4.140 16 C 0.101 3.899 17 H 0.073 0.927 18 N -0.845 5.845 19 C 0.062 3.938 20 H 0.036 0.964 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.265 0.735 24 H 0.029 0.971 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.353 0.647 31 H 0.344 0.656 32 H 0.061 0.939 33 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.089 0.253 -15.700 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.076 3.924 3 H 0.048 0.952 4 C -0.539 4.539 5 H 0.057 0.943 6 C -0.186 4.186 7 N -0.590 5.590 8 Si 0.777 3.223 9 H -0.194 1.194 10 H -0.225 1.225 11 H -0.175 1.175 12 N -0.260 5.260 13 C -0.066 4.066 14 C -0.148 4.148 15 C -0.180 4.180 16 C -0.011 4.011 17 H 0.092 0.908 18 N -0.375 5.375 19 C -0.066 4.066 20 H 0.055 0.945 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.153 0.797 -15.140 15.485 hybrid contribution -1.641 -0.314 0.553 1.760 sum -4.794 0.483 -14.587 15.362 Atomic orbital electron populations 1.22670 0.99911 1.01248 0.99832 1.19554 0.89982 0.94262 0.88639 0.95214 1.21159 1.30330 1.12471 0.89933 0.94328 1.25761 0.97525 0.99919 0.95387 1.70035 1.47877 1.42537 0.98512 0.85846 0.79016 0.80169 0.77273 1.19420 1.22493 1.17544 1.61874 1.59425 1.02883 1.01808 1.21978 0.95800 0.90171 0.98676 1.21528 1.01058 0.98528 0.93697 1.22349 1.01212 0.96654 0.97764 1.21274 0.99787 0.90546 0.89470 0.90848 1.58767 1.19085 1.54506 1.05142 1.22019 0.97768 0.96909 0.89910 0.94515 0.92402 0.92694 0.92569 0.95284 0.93099 0.92255 0.90302 0.90048 0.91838 0.83258 0.84265 0.92003 0.95186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.53 7.92 71.98 0.57 -6.96 16 2 C 0.18 8.77 1.90 44.17 0.08 8.85 16 3 H 0.03 1.48 7.04 -2.39 -0.02 1.46 16 4 C -0.50 -28.94 8.46 25.60 0.22 -28.73 16 5 H 0.04 2.50 7.38 -2.91 -0.02 2.48 16 6 C 0.01 0.65 5.45 84.66 0.46 1.11 16 7 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 8 Si 0.95 45.53 24.37 68.60 1.67 47.20 16 9 H -0.27 -12.20 6.87 99.48 0.68 -11.52 16 10 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 11 H -0.25 -11.27 6.53 99.48 0.65 -10.62 16 12 N -0.54 -22.10 4.59 -875.54 -4.02 -26.12 16 13 C 0.06 2.32 4.54 86.33 0.39 2.71 16 14 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 15 C -0.14 -3.24 5.57 30.68 0.17 -3.07 16 16 C 0.10 2.68 3.41 44.97 0.15 2.83 16 17 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 18 N -0.84 -17.57 9.26 -168.45 -1.56 -19.13 16 19 C 0.06 2.09 4.68 86.33 0.40 2.49 16 20 H 0.04 1.60 3.27 -2.38 -0.01 1.59 16 21 H 0.06 2.09 6.82 -2.39 -0.02 2.07 16 22 H 0.05 2.30 6.46 -2.38 -0.02 2.29 16 23 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 24 H 0.03 1.04 6.58 -2.39 -0.02 1.03 16 25 H 0.05 2.27 6.72 -2.39 -0.02 2.25 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.35 5.68 9.04 -89.69 -0.81 4.87 16 31 H 0.34 6.29 8.98 -89.69 -0.81 5.49 16 32 H 0.06 2.19 8.01 -2.39 -0.02 2.17 16 33 H 0.03 0.95 6.88 -2.38 -0.02 0.94 16 Total: -1.00 -65.16 246.91 -1.56 -66.72 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -0.59 Total: 14.68 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 2.64 Total: -23.72 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -5.28 Total: -104.88 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.20 kcal Total: -65.16 -1.56 -66.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217532426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.555 kcal (2) G-P(sol) polarization free energy of solvation -65.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds