Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47272 * 2 1 4 4 C 1.50709 * 109.46985 * 240.00022 * 2 1 3 5 5 H 1.08003 * 119.99558 * 239.99707 * 4 2 1 6 6 C 1.37872 * 119.99948 * 60.00242 * 4 2 1 7 7 N 1.31518 * 120.00043 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99971 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47340 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47310 * 119.99605 * 8 6 4 11 11 H 1.48509 * 109.47217 * 239.99992 * 8 6 4 12 12 N 1.46899 * 109.47313 * 120.00126 * 2 1 3 13 13 C 1.46847 * 110.99299 * 170.79318 * 12 2 1 14 14 C 1.53041 * 109.51486 * 185.84807 * 13 12 2 15 15 C 1.53120 * 109.27703 * 300.81824 * 14 13 12 16 16 C 1.53119 * 109.16202 * 57.65829 * 15 14 13 17 17 H 1.08996 * 109.50916 * 62.28058 * 16 15 14 18 18 N 1.46896 * 109.50551 * 182.40700 * 16 15 14 19 19 C 1.46847 * 110.99862 * 295.00159 * 12 2 1 20 20 H 1.08994 * 109.47231 * 299.99929 * 1 2 3 21 21 H 1.09005 * 109.47141 * 59.99921 * 1 2 3 22 22 H 1.09005 * 109.47169 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99755 * 180.02562 * 7 6 4 24 24 H 1.09005 * 109.46836 * 65.83946 * 13 12 2 25 25 H 1.08995 * 109.45748 * 305.85482 * 13 12 2 26 26 H 1.08996 * 109.50341 * 180.87808 * 14 13 12 27 27 H 1.09004 * 109.53393 * 60.77542 * 14 13 12 28 28 H 1.08993 * 109.52850 * 297.74913 * 15 14 13 29 29 H 1.09003 * 109.57279 * 177.58700 * 15 14 13 30 30 H 1.00908 * 110.99642 * 299.79430 * 18 16 15 31 31 H 1.00894 * 111.00827 * 63.74977 * 18 16 15 32 32 H 1.09002 * 109.46448 * 54.14158 * 19 12 2 33 33 H 1.08994 * 109.45958 * 294.16523 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1464 -2.2871 -3.6039 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 3.4710 -0.9049 1.1285 14 6 3.9223 -1.7533 2.3196 15 6 3.5558 -1.0338 3.6206 16 6 2.0457 -0.7815 3.6471 17 1 1.5172 -1.7346 3.6347 18 7 1.6937 -0.0403 4.8656 19 6 1.6488 0.0389 2.4176 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 0.7082 1.1609 -3.4844 24 1 3.9808 0.0582 1.1549 25 1 3.7175 -1.4211 0.2008 26 1 5.0017 -1.8978 2.2753 27 1 3.4237 -2.7221 2.2867 28 1 4.0850 -0.0823 3.6722 29 1 3.8365 -1.6535 4.4722 30 1 1.9461 -0.5619 5.6917 31 1 2.1221 0.8732 4.8698 32 1 0.5721 0.2081 2.4260 33 1 2.1673 0.9974 2.4377 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217532513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = -4.769981 kcal Electronic energy + Delta-G solvation = -13356.422345 eV Core-core repulsion = 11223.440196 eV Total energy + Delta-G solvation = -2132.982149 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.60160 -34.99907 -32.77859 -31.63456 -28.49371 -27.79445 -25.05421 -23.48173 -21.54123 -19.89441 -19.21158 -16.27403 -15.78501 -15.46501 -14.35052 -14.04350 -13.75549 -13.22216 -13.18861 -12.74043 -12.43261 -11.96371 -11.54472 -10.97735 -10.77897 -10.64305 -10.57443 -10.54277 -10.28286 -10.05790 -9.82308 -9.53505 -8.77033 -8.48388 -8.38646 -7.12329 -6.00124 -4.04851 3.29914 3.37771 3.41740 4.39741 4.64579 5.04133 5.19357 5.29887 5.35127 5.53205 5.71596 5.93960 5.96690 6.19293 6.23843 6.29594 6.47459 6.54170 6.76809 6.80148 6.95118 7.12615 7.22111 7.33038 7.56155 7.59750 7.79601 7.84899 8.24820 8.36419 8.64904 9.02236 9.60238 11.06758 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054161 B = 0.009987 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.849989 B = 2802.858522 C = 3194.690203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.213 3.787 3 H -0.003 1.003 4 C -0.506 4.506 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.532 5.532 13 C 0.061 3.939 14 C -0.114 4.114 15 C -0.150 4.150 16 C 0.093 3.907 17 H 0.085 0.915 18 N -0.845 5.845 19 C 0.063 3.937 20 H 0.008 0.992 21 H 0.084 0.916 22 H 0.034 0.966 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.336 0.664 31 H 0.335 0.665 32 H 0.078 0.922 33 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 -2.306 9.782 10.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.258 5.258 13 C -0.067 4.067 14 C -0.153 4.153 15 C -0.190 4.190 16 C -0.019 4.019 17 H 0.103 0.897 18 N -0.373 5.373 19 C -0.066 4.066 20 H 0.027 0.973 21 H 0.102 0.898 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.097 0.903 33 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.951 -2.697 9.389 10.205 hybrid contribution 1.763 0.431 -0.685 1.940 sum 4.715 -2.267 8.703 10.155 Atomic orbital electron populations 1.21804 0.97584 0.99644 0.99834 1.19218 0.92464 0.91916 0.85695 0.98569 1.21251 1.31025 1.12293 0.89852 0.91677 1.24946 0.95206 0.95085 0.99043 1.69913 1.36881 1.23067 1.23275 0.86477 0.78596 0.79594 0.82954 1.19753 1.20999 1.21180 1.61970 1.11801 1.49564 1.02443 1.22002 0.88989 0.97529 0.98208 1.21580 0.99532 0.99766 0.94411 1.22411 0.98168 1.00123 0.98258 1.21515 0.92839 0.97859 0.89689 0.89656 1.58878 1.67260 1.06971 1.04187 1.21979 1.01168 0.93647 0.89810 0.97256 0.89767 0.94699 0.93051 0.96560 0.89236 0.92620 0.91472 0.92911 0.92943 0.85215 0.85275 0.90346 0.96644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.88 37.16 0.33 -2.96 16 2 C 0.21 5.50 2.07 -68.86 -0.14 5.36 16 3 H 0.00 -0.09 8.13 -51.93 -0.42 -0.52 16 4 C -0.51 -13.91 7.87 -34.44 -0.27 -14.18 16 5 H 0.07 1.77 6.04 -52.48 -0.32 1.46 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.66 11.32 55.43 0.63 -25.03 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.53 -11.71 4.52 -228.07 -1.03 -12.74 16 13 C 0.06 1.22 5.15 -3.83 -0.02 1.20 16 14 C -0.11 -1.82 6.09 -26.65 -0.16 -1.98 16 15 C -0.15 -2.13 5.57 -26.61 -0.15 -2.28 16 16 C 0.09 1.44 3.41 -67.63 -0.23 1.21 16 17 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 18 N -0.85 -11.07 9.26 -4.60 -0.04 -11.11 16 19 C 0.06 1.21 4.83 -3.83 -0.02 1.19 16 20 H 0.01 0.20 6.40 -51.93 -0.33 -0.13 16 21 H 0.08 2.30 6.07 -51.93 -0.32 1.98 16 22 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 1.94 5.74 -51.93 -0.30 1.64 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.34 3.61 9.04 -39.29 -0.36 3.26 16 31 H 0.34 4.08 8.98 -39.30 -0.35 3.73 16 32 H 0.08 1.59 6.18 -51.93 -0.32 1.27 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 255.16 15.07 3.85 3.85 Total: -1.00 -28.47 255.16 -7.61 -36.08 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.23 Total: 3.52 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.76 Total: -10.91 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.45 Total: -48.88 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.47 -7.61 -36.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217532513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.312 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds