Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47272 * 2 1 4 4 C 1.50709 * 109.46985 * 240.00022 * 2 1 3 5 5 H 1.08003 * 119.99558 * 239.99707 * 4 2 1 6 6 C 1.37872 * 119.99948 * 60.00242 * 4 2 1 7 7 N 1.31518 * 120.00043 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99971 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47340 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47310 * 119.99605 * 8 6 4 11 11 H 1.48509 * 109.47217 * 239.99992 * 8 6 4 12 12 N 1.46899 * 109.47313 * 120.00126 * 2 1 3 13 13 C 1.46847 * 110.99299 * 170.79318 * 12 2 1 14 14 C 1.53041 * 109.51486 * 185.84807 * 13 12 2 15 15 C 1.53120 * 109.27703 * 300.81824 * 14 13 12 16 16 C 1.53119 * 109.16202 * 57.65829 * 15 14 13 17 17 H 1.08996 * 109.50916 * 62.28058 * 16 15 14 18 18 N 1.46896 * 109.50551 * 182.40700 * 16 15 14 19 19 C 1.46847 * 110.99862 * 295.00159 * 12 2 1 20 20 H 1.08994 * 109.47231 * 299.99929 * 1 2 3 21 21 H 1.09005 * 109.47141 * 59.99921 * 1 2 3 22 22 H 1.09005 * 109.47169 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99755 * 180.02562 * 7 6 4 24 24 H 1.09005 * 109.46836 * 65.83946 * 13 12 2 25 25 H 1.08995 * 109.45748 * 305.85482 * 13 12 2 26 26 H 1.08996 * 109.50341 * 180.87808 * 14 13 12 27 27 H 1.09004 * 109.53393 * 60.77542 * 14 13 12 28 28 H 1.08993 * 109.52850 * 297.74913 * 15 14 13 29 29 H 1.09003 * 109.57279 * 177.58700 * 15 14 13 30 30 H 1.00908 * 110.99642 * 299.79430 * 18 16 15 31 31 H 1.00894 * 111.00827 * 63.74977 * 18 16 15 32 32 H 1.09002 * 109.46448 * 54.14158 * 19 12 2 33 33 H 1.08994 * 109.45958 * 294.16523 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1464 -2.2871 -3.6039 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 3.4710 -0.9049 1.1285 14 6 3.9223 -1.7533 2.3196 15 6 3.5558 -1.0338 3.6206 16 6 2.0457 -0.7815 3.6471 17 1 1.5172 -1.7346 3.6347 18 7 1.6937 -0.0403 4.8656 19 6 1.6488 0.0389 2.4176 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 0.7082 1.1609 -3.4844 24 1 3.9808 0.0582 1.1549 25 1 3.7175 -1.4211 0.2008 26 1 5.0017 -1.8978 2.2753 27 1 3.4237 -2.7221 2.2867 28 1 4.0850 -0.0823 3.6722 29 1 3.8365 -1.6535 4.4722 30 1 1.9461 -0.5619 5.6917 31 1 2.1221 0.8732 4.8698 32 1 0.5721 0.2081 2.4260 33 1 2.1673 0.9974 2.4377 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217532513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = -25.802439 kcal Electronic energy + Delta-G solvation = -13357.334380 eV Core-core repulsion = 11223.440196 eV Total energy + Delta-G solvation = -2133.894184 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.13127 -36.65668 -34.49126 -33.26258 -30.34431 -29.24244 -27.06612 -25.07711 -22.97778 -21.72531 -20.69007 -18.34140 -17.39373 -16.84472 -16.15968 -15.49377 -15.25517 -14.91414 -14.62667 -14.35141 -14.07608 -13.52387 -13.34539 -12.89716 -12.52883 -12.37223 -12.22749 -12.15039 -12.06958 -11.78745 -11.63364 -11.08070 -10.78485 -10.52833 -9.54992 -8.94314 -8.12670 -6.24970 1.40811 1.42456 1.54368 2.41233 3.13527 3.22835 3.77134 3.92290 4.02550 4.19440 4.36464 4.47397 4.67258 4.74973 4.78859 4.84545 4.98898 5.00751 5.08018 5.18131 5.21300 5.29985 5.42178 5.53759 5.72073 5.79250 6.23090 6.24841 6.39566 6.65773 6.77199 6.91155 7.44453 8.94056 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054161 B = 0.009987 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.849989 B = 2802.858522 C = 3194.690203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.216 3.784 3 H -0.043 1.043 4 C -0.521 4.521 5 H 0.064 0.936 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.536 5.536 13 C 0.060 3.940 14 C -0.107 4.107 15 C -0.142 4.142 16 C 0.104 3.896 17 H 0.079 0.921 18 N -0.846 5.846 19 C 0.063 3.937 20 H 0.025 0.975 21 H 0.060 0.940 22 H 0.031 0.969 23 H 0.262 0.738 24 H 0.004 0.996 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.354 0.646 31 H 0.342 0.658 32 H 0.063 0.937 33 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.000 -3.466 10.970 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.109 3.891 3 H -0.025 1.025 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.190 4.190 7 N -0.561 5.561 8 Si 0.788 3.212 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.262 5.262 13 C -0.068 4.068 14 C -0.145 4.145 15 C -0.182 4.182 16 C -0.008 4.008 17 H 0.097 0.903 18 N -0.376 5.376 19 C -0.065 4.065 20 H 0.044 0.956 21 H 0.079 0.921 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.023 0.977 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.168 0.832 31 H 0.155 0.845 32 H 0.082 0.918 33 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 3.928 -3.867 10.613 11.959 hybrid contribution 1.450 0.839 -1.014 1.958 sum 5.378 -3.028 9.599 11.412 Atomic orbital electron populations 1.21617 0.97335 0.99204 0.99471 1.19034 0.92692 0.90012 0.87381 1.02536 1.21521 1.31165 1.12383 0.90850 0.91769 1.25775 0.95342 0.95784 1.02092 1.70044 1.37767 1.24303 1.24028 0.85433 0.78130 0.78602 0.79032 1.18928 1.20556 1.20719 1.61935 1.13127 1.49075 1.02029 1.22035 0.87699 0.97525 0.99587 1.21526 1.00937 0.98846 0.93194 1.22361 0.96790 1.00685 0.98337 1.21274 0.93897 0.96824 0.88836 0.90270 1.58760 1.67545 1.07380 1.03905 1.22017 1.00173 0.93927 0.90434 0.95572 0.92141 0.94946 0.92925 0.97736 0.91415 0.90209 0.91405 0.92627 0.89682 0.83169 0.84483 0.91811 0.97446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.09 8.88 71.98 0.64 -5.45 16 2 C 0.22 11.47 2.07 44.17 0.09 11.56 16 3 H -0.04 -2.56 8.13 -2.39 -0.02 -2.58 16 4 C -0.52 -29.19 7.87 25.60 0.20 -28.99 16 5 H 0.06 3.54 6.04 -2.91 -0.02 3.52 16 6 C 0.01 0.48 5.30 84.65 0.45 0.93 16 7 N -0.92 -54.13 11.32 21.45 0.24 -53.89 16 8 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 9 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 N -0.54 -23.77 4.52 -875.49 -3.95 -27.72 16 13 C 0.06 2.38 5.15 86.33 0.44 2.83 16 14 C -0.11 -3.13 6.09 30.65 0.19 -2.94 16 15 C -0.14 -3.57 5.57 30.67 0.17 -3.40 16 16 C 0.10 3.00 3.41 44.97 0.15 3.15 16 17 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 18 N -0.85 -19.84 9.26 -168.46 -1.56 -21.39 16 19 C 0.06 2.41 4.83 86.33 0.42 2.83 16 20 H 0.03 1.20 6.40 -2.39 -0.02 1.19 16 21 H 0.06 3.40 6.07 -2.38 -0.01 3.38 16 22 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 25 H 0.07 2.97 5.74 -2.39 -0.01 2.95 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.35 6.34 9.04 -89.69 -0.81 5.52 16 31 H 0.34 7.46 8.98 -89.70 -0.81 6.65 16 32 H 0.06 2.59 6.18 -2.39 -0.01 2.57 16 33 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -61.74 255.16 -1.01 -62.75 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -0.52 Total: 13.65 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 2.75 Total: -19.48 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -5.27 Total: -103.01 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -61.74 -1.01 -62.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217532513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.943 kcal (2) G-P(sol) polarization free energy of solvation -61.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds