Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 N 1.46901 * 109.47237 * 120.00312 * 2 1 3 5 5 C 1.46956 * 110.99929 * 56.04676 * 4 2 1 6 6 C 1.53049 * 109.37889 * 176.82469 * 5 4 2 7 7 N 1.46955 * 109.36962 * 58.38792 * 6 5 4 8 8 C 1.46955 * 110.87760 * 300.68251 * 7 6 5 9 9 H 1.09003 * 109.48675 * 299.34665 * 8 7 6 10 10 C 1.50696 * 109.48895 * 179.28758 * 8 7 6 11 11 H 1.08001 * 120.00226 * 240.00011 * 10 8 7 12 12 C 1.37882 * 120.00155 * 59.99470 * 10 8 7 13 13 N 1.31511 * 120.00019 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99952 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47138 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47059 * 120.00333 * 14 12 10 17 17 H 1.48500 * 109.47044 * 240.00055 * 14 12 10 18 18 C 1.46957 * 111.01647 * 292.23381 * 4 2 1 19 19 H 1.09007 * 109.47082 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47082 * 299.99569 * 1 2 3 21 21 H 1.08998 * 109.47461 * 59.99925 * 1 2 3 22 22 H 1.09003 * 109.47082 * 240.00431 * 2 1 3 23 23 H 1.08998 * 109.47372 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.46958 * 300.00382 * 3 2 1 25 25 H 1.09003 * 109.46735 * 60.00219 * 3 2 1 26 26 H 1.09002 * 109.49189 * 56.84312 * 5 4 2 27 27 H 1.09002 * 109.48707 * 296.80070 * 5 4 2 28 28 H 1.09005 * 109.48797 * 178.36083 * 6 5 4 29 29 H 1.08999 * 109.49048 * 298.39592 * 6 5 4 30 30 H 1.00893 * 111.00361 * 176.81140 * 7 6 5 31 31 H 0.96999 * 120.00417 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.47347 * 63.19745 * 18 4 2 33 33 H 1.09007 * 109.48682 * 303.14394 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.4728 -2.0541 1.2815 6 6 2.0670 -2.7675 2.4982 7 7 1.7529 -2.0027 3.7131 8 6 2.3002 -0.6414 3.6311 9 1 3.3844 -0.6908 3.5301 10 6 1.9457 0.1192 4.8828 11 1 1.3570 1.0223 4.8175 12 6 2.3728 -0.3378 6.1116 13 7 3.0891 -1.4378 6.1913 14 14 1.9327 0.6047 7.6632 15 1 1.1255 1.7985 7.3050 16 1 1.1468 -0.2716 8.5685 17 1 3.1767 1.0368 8.3495 18 6 1.7060 0.0721 2.4145 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.7292 -2.6043 0.3761 27 1 0.3886 -2.0050 1.3824 28 1 1.6406 -3.7676 2.5775 29 1 3.1485 -2.8415 2.3841 30 1 2.0889 -2.4786 4.5369 31 1 3.3899 -1.7592 7.0556 32 1 0.6245 0.1457 2.5284 33 1 2.1325 1.0721 2.3351 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218741936.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = 2.158871 kcal Electronic energy + Delta-G solvation = -13470.343319 eV Core-core repulsion = 11337.661628 eV Total energy + Delta-G solvation = -2132.681691 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.67434 -35.00306 -32.53970 -30.05370 -29.92093 -27.00234 -25.30017 -24.24899 -21.57193 -20.16847 -18.18367 -16.61753 -15.49551 -14.67481 -14.45947 -14.00729 -13.82565 -13.45051 -13.10468 -12.68343 -12.25116 -12.03775 -11.47609 -11.41073 -11.03685 -10.94819 -10.88513 -10.69159 -10.32148 -10.25063 -9.86558 -9.33089 -9.03608 -8.56798 -7.59583 -6.81308 -6.07497 -4.10135 3.29894 3.37741 3.41974 4.39250 4.59913 5.18678 5.22149 5.39274 5.58572 5.74570 5.82545 5.87424 5.96581 6.06137 6.12946 6.17254 6.25720 6.39742 6.45863 6.55422 6.57672 6.75229 6.80817 7.00119 7.51677 7.77173 7.80724 7.94826 8.25154 8.69919 9.02334 9.15924 9.57614 11.03261 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046097 B = 0.010629 C = 0.009337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.267055 B = 2633.639204 C = 2997.951593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.075 3.925 3 C -0.147 4.147 4 N -0.537 5.537 5 C 0.062 3.938 6 C 0.055 3.945 7 N -0.686 5.686 8 C 0.218 3.782 9 H 0.003 0.997 10 C -0.504 4.504 11 H 0.059 0.941 12 C 0.066 3.934 13 N -0.900 5.900 14 Si 0.899 3.101 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.065 3.935 19 H 0.055 0.945 20 H 0.059 0.941 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.020 0.980 30 H 0.362 0.638 31 H 0.263 0.737 32 H 0.030 0.970 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 1.102 -9.279 9.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.034 4.034 3 C -0.204 4.204 4 N -0.261 5.261 5 C -0.067 4.067 6 C -0.076 4.076 7 N -0.324 5.324 8 C 0.110 3.890 9 H 0.020 0.980 10 C -0.543 4.543 11 H 0.077 0.923 12 C -0.135 4.135 13 N -0.541 5.541 14 Si 0.727 3.273 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.062 4.062 19 H 0.074 0.926 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.186 0.814 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.830 1.139 -9.391 9.874 hybrid contribution -0.162 0.238 1.033 1.073 sum -2.992 1.377 -8.358 8.984 Atomic orbital electron populations 1.22470 0.98246 1.01861 1.01803 1.21658 0.92349 0.95185 0.94219 1.21909 1.01722 0.95378 1.01399 1.62478 1.58402 1.02518 1.02697 1.22097 0.97278 0.89684 0.97613 1.21860 0.97163 0.96080 0.92460 1.60993 1.63391 1.04629 1.03381 1.19045 0.92784 0.86045 0.91115 0.97962 1.21164 1.33295 1.08941 0.90902 0.92255 1.24984 0.94300 0.95039 0.99188 1.69687 1.37060 1.22300 1.25019 0.86434 0.78085 0.79866 0.82941 1.19775 1.20977 1.21114 1.22388 0.98274 0.96731 0.88846 0.92565 0.92214 0.92961 0.91025 0.92060 0.93010 0.92035 0.92357 0.94544 0.92682 0.96233 0.81387 0.92717 0.95214 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 8.46 37.16 0.31 -2.37 16 2 C 0.07 1.17 3.11 -67.71 -0.21 0.96 16 3 C -0.15 -2.11 8.70 37.16 0.32 -1.79 16 4 N -0.54 -10.41 4.77 -226.49 -1.08 -11.49 16 5 C 0.06 1.16 5.01 -3.77 -0.02 1.14 16 6 C 0.06 1.16 6.72 -3.77 -0.03 1.14 16 7 N -0.69 -17.18 6.53 -107.82 -0.70 -17.88 16 8 C 0.22 5.69 2.55 -68.81 -0.18 5.52 16 9 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 10 C -0.50 -14.04 8.76 -34.44 -0.30 -14.34 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.07 1.84 5.35 -17.82 -0.10 1.74 16 13 N -0.90 -25.59 11.49 55.43 0.64 -24.96 16 14 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.06 1.44 4.03 -3.77 -0.02 1.42 16 19 H 0.06 0.82 6.42 -51.93 -0.33 0.48 16 20 H 0.06 0.96 6.68 -51.93 -0.35 0.61 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.95 6.25 -51.93 -0.32 0.62 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.69 6.43 -51.93 -0.33 0.36 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.36 9.76 6.71 -39.30 -0.26 9.50 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.03 0.68 6.68 -51.93 -0.35 0.33 16 33 H 0.07 1.43 6.01 -51.92 -0.31 1.12 16 LS Contribution 252.71 15.07 3.81 3.81 Total: -1.00 -28.34 252.71 -7.75 -36.09 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.18 Total: 4.66 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.20 Total: -6.59 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -1.15 Total: -54.33 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.34 -7.75 -36.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218741936.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.252 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds