Wall clock time and date at job start Mon Mar 30 2020 01:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46955 * 111.00423 * 2 1 4 4 C 1.53046 * 109.36741 * 183.19025 * 3 2 1 5 5 H 1.08999 * 109.49238 * 61.58919 * 4 3 2 6 6 C 1.50700 * 109.48860 * 181.63116 * 4 3 2 7 7 H 1.08000 * 120.00333 * 359.97438 * 6 4 3 8 8 C 1.37878 * 119.99911 * 179.97438 * 6 4 3 9 9 N 1.31521 * 119.99709 * 179.97438 * 8 6 4 10 10 Si 1.86798 * 120.00166 * 0.02562 * 8 6 4 11 11 H 1.48500 * 109.46990 * 89.99880 * 10 8 6 12 12 H 1.48505 * 109.47210 * 209.99738 * 10 8 6 13 13 H 1.48499 * 109.46883 * 329.99952 * 10 8 6 14 14 N 1.46957 * 109.38065 * 301.60834 * 4 3 2 15 15 C 1.46956 * 110.88202 * 59.28891 * 14 4 3 16 16 C 1.46955 * 111.00233 * 123.80063 * 2 1 3 17 17 C 1.53006 * 109.48788 * 56.84093 * 16 2 1 18 18 C 1.53004 * 109.50539 * 296.79038 * 16 2 1 19 19 H 1.09008 * 109.47123 * 296.19879 * 1 2 3 20 20 H 1.08999 * 109.47347 * 56.20013 * 1 2 3 21 21 H 1.09002 * 109.47073 * 176.20254 * 1 2 3 22 22 H 1.09002 * 109.48806 * 303.15815 * 3 2 1 23 23 H 1.09002 * 109.48581 * 63.19765 * 3 2 1 24 24 H 0.97001 * 119.99222 * 180.02562 * 9 8 6 25 25 H 1.00901 * 110.98799 * 295.43214 * 14 4 3 26 26 H 1.09002 * 109.49189 * 180.73281 * 15 14 4 27 27 H 1.09002 * 109.48707 * 60.69040 * 15 14 4 28 28 H 1.09006 * 109.46757 * 179.89541 * 17 16 2 29 29 H 1.08997 * 109.46842 * 299.89026 * 17 16 2 30 30 H 1.09000 * 109.46825 * 59.89430 * 17 16 2 31 31 H 1.09002 * 109.47000 * 300.09326 * 18 16 2 32 32 H 1.09000 * 109.47226 * 60.09947 * 18 16 2 33 33 H 1.09002 * 109.47220 * 180.09880 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3290 -0.0804 5 1 3.8254 0.8482 -1.0108 6 6 4.0687 2.7333 -0.0402 7 1 3.3934 3.5729 0.0347 8 6 5.4296 2.9464 -0.0990 9 7 5.9054 4.1721 -0.0644 10 14 6.5976 1.4944 -0.2293 11 1 6.8360 1.1778 -1.6604 12 1 7.8869 1.8362 0.4235 13 1 5.9983 0.3151 0.4455 14 7 4.0505 0.5656 1.0594 15 6 3.5234 -0.8062 1.0598 16 6 1.9957 -0.7632 1.1400 17 6 1.4421 -2.1890 1.0992 18 6 1.5719 -0.0883 2.4462 19 1 -0.3634 0.4537 0.9222 20 1 -0.3634 0.5717 -0.8540 21 1 -0.3633 -1.0254 -0.0681 22 1 1.6014 1.9128 -0.8602 23 1 1.6935 1.8774 0.9172 24 1 6.8628 4.3219 -0.1062 25 1 3.8472 1.0312 1.9312 26 1 3.9178 -1.3471 1.9200 27 1 3.8253 -1.3119 0.1426 28 1 1.8344 -2.7554 1.9440 29 1 0.3540 -2.1581 1.1565 30 1 1.7435 -2.6693 0.1683 31 1 1.9658 0.9276 2.4746 32 1 0.4838 -0.0580 2.5031 33 1 1.9643 -0.6538 3.2914 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218742217.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:37 Heat of formation + Delta-G solvation = 17.052533 kcal Electronic energy + Delta-G solvation = -13777.907774 eV Core-core repulsion = 11645.871921 eV Total energy + Delta-G solvation = -2132.035853 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.53543 -34.40964 -32.75415 -31.73411 -27.97699 -27.28047 -26.32786 -23.88346 -22.86340 -20.38346 -18.16344 -16.76868 -15.60887 -14.87270 -14.43448 -14.30264 -13.83492 -13.38621 -13.06663 -12.68072 -12.51818 -11.97683 -11.77112 -11.60698 -11.35186 -11.23616 -10.87497 -10.64334 -10.46848 -10.10949 -9.91046 -9.65965 -9.05039 -8.47794 -7.83695 -6.93491 -5.97605 -4.07088 3.56165 3.64987 3.98204 4.34229 4.75317 5.04656 5.18620 5.28858 5.43082 5.51632 5.62968 5.72030 5.79039 5.86402 5.98494 6.04029 6.09355 6.14554 6.17650 6.24996 6.35128 6.43286 6.63848 6.69730 7.05654 7.54980 7.58852 7.75875 8.23729 8.27890 8.70874 9.01566 9.67883 11.12249 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050066 B = 0.012733 C = 0.011366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.132795 B = 2198.458848 C = 2462.888661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.532 5.532 3 C 0.037 3.963 4 C 0.190 3.810 5 H 0.044 0.956 6 C -0.528 4.528 7 H 0.068 0.932 8 C 0.085 3.915 9 N -0.901 5.901 10 Si 0.864 3.136 11 H -0.296 1.296 12 H -0.305 1.305 13 H -0.190 1.190 14 N -0.676 5.676 15 C 0.066 3.934 16 C 0.067 3.933 17 C -0.135 4.135 18 C -0.181 4.181 19 H 0.021 0.979 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.029 0.971 24 H 0.262 0.738 25 H 0.330 0.670 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 -11.052 3.307 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.256 5.256 3 C -0.092 4.092 4 C 0.082 3.918 5 H 0.062 0.938 6 C -0.566 4.566 7 H 0.086 0.914 8 C -0.119 4.119 9 N -0.538 5.538 10 Si 0.690 3.310 11 H -0.223 1.223 12 H -0.233 1.233 13 H -0.111 1.111 14 N -0.306 5.306 15 C -0.064 4.064 16 C -0.024 4.024 17 C -0.193 4.193 18 C -0.240 4.240 19 H 0.039 0.961 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.149 0.851 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.465 -11.346 2.554 13.820 hybrid contribution -0.639 0.177 0.908 1.124 sum -8.104 -11.169 3.462 14.227 Atomic orbital electron populations 1.22413 0.89187 1.01246 0.99952 1.62406 1.06428 1.15529 1.41244 1.22857 0.99686 0.86643 1.00034 1.19566 0.87283 0.94256 0.90657 0.93778 1.20845 0.92793 0.89915 1.53058 0.91401 1.24989 0.98566 0.96000 0.92371 1.69969 1.13512 1.20880 1.49474 0.87221 0.78362 0.87475 0.77892 1.22330 1.23263 1.11098 1.61858 1.60011 1.01409 1.07298 1.22084 0.89038 0.93992 1.01329 1.21863 0.98396 0.93578 0.88614 1.21838 1.00225 0.95472 1.01756 1.22450 1.00968 1.02087 0.98463 0.96062 0.92005 0.91862 0.91276 0.95265 0.92850 0.85141 0.91967 0.91243 0.92669 0.93104 0.92064 0.91686 0.93050 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.81 60.06 0.53 0.83 16 2 N -0.53 -9.25 4.73 -227.01 -1.07 -10.32 16 3 C 0.04 0.74 4.46 -3.77 -0.02 0.73 16 4 C 0.19 4.43 1.95 -68.81 -0.13 4.29 16 5 H 0.04 1.10 7.57 -51.93 -0.39 0.71 16 6 C -0.53 -14.73 9.27 -34.44 -0.32 -15.04 16 7 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 8 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 9 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 10 Si 0.86 21.82 26.94 -169.99 -4.58 17.24 16 11 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 13 H -0.19 -4.45 5.16 56.52 0.29 -4.16 16 14 N -0.68 -14.26 3.10 -107.82 -0.33 -14.59 16 15 C 0.07 1.17 5.48 -3.77 -0.02 1.15 16 16 C 0.07 1.06 0.68 -131.54 -0.09 0.97 16 17 C -0.13 -1.74 8.14 37.16 0.30 -1.44 16 18 C -0.18 -2.68 7.49 37.16 0.28 -2.40 16 19 H 0.02 0.30 6.39 -51.92 -0.33 -0.03 16 20 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 21 H 0.06 0.81 6.25 -51.93 -0.32 0.48 16 22 H 0.07 1.43 8.13 -51.93 -0.42 1.01 16 23 H 0.03 0.61 6.35 -51.93 -0.33 0.28 16 24 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 25 H 0.33 6.91 7.18 -39.29 -0.28 6.63 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.61 6.36 -51.93 -0.33 0.28 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.10 5.10 -51.93 -0.26 0.83 16 32 H 0.05 0.71 6.48 -51.93 -0.34 0.38 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 244.80 15.07 3.69 3.69 Total: -1.00 -29.98 244.80 -6.31 -36.29 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.22 Total: 3.45 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 0.43 Total: -8.56 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.64 Total: -52.10 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.58 Total: 17.24 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.98 -6.31 -36.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218742217.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.339 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds