Wall clock time and date at job start Mon Mar 30 2020 01:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46955 * 111.00423 * 2 1 4 4 C 1.53046 * 109.36741 * 183.19025 * 3 2 1 5 5 H 1.08999 * 109.49238 * 61.58919 * 4 3 2 6 6 C 1.50700 * 109.48860 * 181.63116 * 4 3 2 7 7 H 1.08000 * 120.00333 * 359.97438 * 6 4 3 8 8 C 1.37878 * 119.99911 * 179.97438 * 6 4 3 9 9 N 1.31521 * 119.99709 * 179.97438 * 8 6 4 10 10 Si 1.86798 * 120.00166 * 0.02562 * 8 6 4 11 11 H 1.48500 * 109.46990 * 89.99880 * 10 8 6 12 12 H 1.48505 * 109.47210 * 209.99738 * 10 8 6 13 13 H 1.48499 * 109.46883 * 329.99952 * 10 8 6 14 14 N 1.46957 * 109.38065 * 301.60834 * 4 3 2 15 15 C 1.46956 * 110.88202 * 59.28891 * 14 4 3 16 16 C 1.46955 * 111.00233 * 123.80063 * 2 1 3 17 17 C 1.53006 * 109.48788 * 56.84093 * 16 2 1 18 18 C 1.53004 * 109.50539 * 296.79038 * 16 2 1 19 19 H 1.09008 * 109.47123 * 296.19879 * 1 2 3 20 20 H 1.08999 * 109.47347 * 56.20013 * 1 2 3 21 21 H 1.09002 * 109.47073 * 176.20254 * 1 2 3 22 22 H 1.09002 * 109.48806 * 303.15815 * 3 2 1 23 23 H 1.09002 * 109.48581 * 63.19765 * 3 2 1 24 24 H 0.97001 * 119.99222 * 180.02562 * 9 8 6 25 25 H 1.00901 * 110.98799 * 295.43214 * 14 4 3 26 26 H 1.09002 * 109.49189 * 180.73281 * 15 14 4 27 27 H 1.09002 * 109.48707 * 60.69040 * 15 14 4 28 28 H 1.09006 * 109.46757 * 179.89541 * 17 16 2 29 29 H 1.08997 * 109.46842 * 299.89026 * 17 16 2 30 30 H 1.09000 * 109.46825 * 59.89430 * 17 16 2 31 31 H 1.09002 * 109.47000 * 300.09326 * 18 16 2 32 32 H 1.09000 * 109.47226 * 60.09947 * 18 16 2 33 33 H 1.09002 * 109.47220 * 180.09880 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3290 -0.0804 5 1 3.8254 0.8482 -1.0108 6 6 4.0687 2.7333 -0.0402 7 1 3.3934 3.5729 0.0347 8 6 5.4296 2.9464 -0.0990 9 7 5.9054 4.1721 -0.0644 10 14 6.5976 1.4944 -0.2293 11 1 6.8360 1.1778 -1.6604 12 1 7.8869 1.8362 0.4235 13 1 5.9983 0.3151 0.4455 14 7 4.0505 0.5656 1.0594 15 6 3.5234 -0.8062 1.0598 16 6 1.9957 -0.7632 1.1400 17 6 1.4421 -2.1890 1.0992 18 6 1.5719 -0.0883 2.4462 19 1 -0.3634 0.4537 0.9222 20 1 -0.3634 0.5717 -0.8540 21 1 -0.3633 -1.0254 -0.0681 22 1 1.6014 1.9128 -0.8602 23 1 1.6935 1.8774 0.9172 24 1 6.8628 4.3219 -0.1062 25 1 3.8472 1.0312 1.9312 26 1 3.9178 -1.3471 1.9200 27 1 3.8253 -1.3119 0.1426 28 1 1.8344 -2.7554 1.9440 29 1 0.3540 -2.1581 1.1565 30 1 1.7435 -2.6693 0.1683 31 1 1.9658 0.9276 2.4746 32 1 0.4838 -0.0580 2.5031 33 1 1.9643 -0.6538 3.2914 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218742217.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:37 Heat of formation + Delta-G solvation = -5.288765 kcal Electronic energy + Delta-G solvation = -13778.876565 eV Core-core repulsion = 11645.871921 eV Total energy + Delta-G solvation = -2133.004645 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.94892 -36.11459 -34.34619 -33.61594 -29.60339 -28.47550 -27.73239 -25.62147 -24.28127 -22.13159 -19.64047 -18.80330 -17.02525 -16.50024 -16.01609 -15.77759 -15.41440 -14.94835 -14.56697 -14.39280 -14.00582 -13.52817 -13.05084 -12.80296 -12.73101 -12.65958 -12.46716 -12.12909 -11.94559 -11.76683 -11.71930 -11.48185 -11.06356 -10.70195 -9.21730 -8.60157 -8.24039 -6.36758 1.52470 1.57962 1.95968 2.62649 3.01613 3.12587 3.75468 3.99306 4.07719 4.23997 4.30893 4.36944 4.57872 4.64373 4.71097 4.74440 4.88513 4.91749 4.95513 5.01456 5.03224 5.09292 5.24318 5.28984 5.47241 5.63929 6.10218 6.17629 6.33298 6.44277 6.79946 6.87757 7.41938 8.89297 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050066 B = 0.012733 C = 0.011366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.132795 B = 2198.458848 C = 2462.888661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.541 5.541 3 C 0.049 3.951 4 C 0.200 3.800 5 H 0.031 0.969 6 C -0.527 4.527 7 H 0.027 0.973 8 C 0.028 3.972 9 N -0.951 5.951 10 Si 0.928 3.072 11 H -0.303 1.303 12 H -0.313 1.313 13 H -0.157 1.157 14 N -0.685 5.685 15 C 0.064 3.936 16 C 0.065 3.935 17 C -0.127 4.127 18 C -0.175 4.175 19 H 0.025 0.975 20 H 0.061 0.939 21 H 0.087 0.913 22 H 0.055 0.945 23 H 0.021 0.979 24 H 0.262 0.738 25 H 0.331 0.669 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.281 -14.145 4.149 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.265 5.265 3 C -0.080 4.080 4 C 0.091 3.909 5 H 0.049 0.951 6 C -0.566 4.566 7 H 0.046 0.954 8 C -0.170 4.170 9 N -0.590 5.590 10 Si 0.753 3.247 11 H -0.231 1.231 12 H -0.241 1.241 13 H -0.077 1.077 14 N -0.316 5.316 15 C -0.066 4.066 16 C -0.026 4.026 17 C -0.185 4.185 18 C -0.234 4.234 19 H 0.044 0.956 20 H 0.080 0.920 21 H 0.106 0.894 22 H 0.074 0.926 23 H 0.039 0.961 24 H 0.071 0.929 25 H 0.150 0.850 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.411 -14.464 3.406 17.075 hybrid contribution -0.454 1.171 0.649 1.414 sum -8.865 -13.293 4.055 16.484 Atomic orbital electron populations 1.22477 0.87090 1.02882 1.00209 1.62367 1.08338 1.13231 1.42576 1.22503 0.97725 0.88755 0.99054 1.19219 0.89181 0.91516 0.90995 0.95147 1.21123 0.92249 0.91494 1.51699 0.95450 1.25879 1.00454 0.98426 0.92291 1.70107 1.13805 1.23209 1.51916 0.86302 0.75650 0.85303 0.77410 1.23079 1.24134 1.07725 1.61526 1.60684 1.02992 1.06355 1.22212 0.90650 0.91482 1.02287 1.21932 0.97110 0.95275 0.88313 1.21783 1.01009 0.93112 1.02630 1.22386 1.01632 1.00649 0.98706 0.95640 0.92040 0.89409 0.92618 0.96110 0.92917 0.85015 0.89282 0.91796 0.90631 0.91802 0.92224 0.94359 0.91978 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 8.81 127.69 1.12 1.68 16 2 N -0.54 -17.55 4.73 -872.12 -4.13 -21.68 16 3 C 0.05 1.99 4.46 86.31 0.38 2.37 16 4 C 0.20 9.26 1.95 44.17 0.09 9.34 16 5 H 0.03 1.51 7.57 -2.39 -0.02 1.49 16 6 C -0.53 -30.29 9.27 25.60 0.24 -30.05 16 7 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 8 C 0.03 1.67 5.47 84.65 0.46 2.14 16 9 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 10 Si 0.93 45.55 26.94 68.60 1.85 47.40 16 11 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 12 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 13 H -0.16 -6.84 5.16 99.48 0.51 -6.33 16 14 N -0.69 -27.68 3.10 -495.02 -1.54 -29.21 16 15 C 0.06 2.02 5.48 86.31 0.47 2.49 16 16 C 0.06 1.81 0.68 3.54 0.00 1.81 16 17 C -0.13 -2.67 8.14 71.98 0.59 -2.08 16 18 C -0.17 -4.62 7.49 71.98 0.54 -4.08 16 19 H 0.03 0.64 6.39 -2.38 -0.02 0.63 16 20 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 21 H 0.09 1.88 6.25 -2.39 -0.01 1.86 16 22 H 0.06 2.34 8.13 -2.39 -0.02 2.33 16 23 H 0.02 0.87 6.35 -2.39 -0.02 0.85 16 24 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 25 H 0.33 13.43 7.18 -89.69 -0.64 12.79 16 26 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.06 1.19 6.36 -2.39 -0.02 1.18 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.22 5.10 -2.39 -0.01 1.20 16 32 H 0.06 1.50 6.48 -2.39 -0.02 1.49 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -65.92 244.80 0.63 -65.29 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.25 Total: 15.27 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 3.90 Total: -16.39 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -5.36 Total: -111.57 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.85 Total: 47.40 kcal Total: -65.92 0.63 -65.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218742217.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.001 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds