Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 110.99983 * 2 1 4 4 C 1.53052 * 109.36398 * 176.81149 * 3 2 1 5 5 H 1.09005 * 109.50755 * 298.42421 * 4 3 2 6 6 C 1.50694 * 109.48917 * 178.36769 * 4 3 2 7 7 H 1.08000 * 120.00563 * 0.10770 * 6 4 3 8 8 C 1.37885 * 119.99902 * 180.10934 * 6 4 3 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46985 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47276 * 299.99832 * 10 8 6 13 13 H 1.48498 * 109.47150 * 60.00043 * 10 8 6 14 14 N 1.46961 * 109.36162 * 58.39969 * 4 3 2 15 15 C 1.46956 * 110.87998 * 300.67672 * 14 4 3 16 16 C 1.46961 * 110.99700 * 236.19895 * 2 1 3 17 17 C 1.52997 * 109.48849 * 63.22403 * 16 2 1 18 18 C 1.52999 * 109.50463 * 303.16637 * 16 2 1 19 19 H 1.08999 * 109.47597 * 183.79650 * 1 2 3 20 20 H 1.08998 * 109.47029 * 303.80639 * 1 2 3 21 21 H 1.09008 * 109.47132 * 63.80085 * 1 2 3 22 22 H 1.08997 * 109.49125 * 56.84479 * 3 2 1 23 23 H 1.09003 * 109.48602 * 296.77680 * 3 2 1 24 24 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 25 25 H 1.00907 * 110.99371 * 176.81540 * 14 4 3 26 26 H 1.09005 * 109.48641 * 179.28660 * 15 14 4 27 27 H 1.08994 * 109.49097 * 299.35449 * 15 14 4 28 28 H 1.09004 * 109.46844 * 179.88812 * 17 16 2 29 29 H 1.08996 * 109.47430 * 299.88682 * 17 16 2 30 30 H 1.09004 * 109.47331 * 59.89167 * 17 16 2 31 31 H 1.08994 * 109.47149 * 300.09537 * 18 16 2 32 32 H 1.08995 * 109.47133 * 60.10504 * 18 16 2 33 33 H 1.09003 * 109.46542 * 180.10277 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 0.0803 5 1 3.8257 0.8481 1.0106 6 6 4.0687 2.7333 0.0401 7 1 3.3934 3.5730 -0.0334 8 6 5.4298 2.9464 0.0972 9 7 6.2521 1.9240 0.1872 10 14 6.1056 4.6871 0.0466 11 1 7.5881 4.6449 0.1226 12 1 5.6929 5.3417 -1.2208 13 1 5.5731 5.4584 1.1984 14 7 4.0501 0.5658 -1.0598 15 6 3.5234 -0.8062 -1.0597 16 6 1.9956 -0.7633 -1.1401 17 6 1.5719 -0.0879 -2.4459 18 6 1.4421 -2.1891 -1.0998 19 1 -0.3634 -1.0254 0.0680 20 1 -0.3633 0.5718 0.8539 21 1 -0.3634 0.4537 -0.9222 22 1 1.6014 1.9129 0.8602 23 1 1.6938 1.8773 -0.9174 24 1 7.2096 2.0739 0.2270 25 1 5.0591 0.5658 -1.0597 26 1 3.9177 -1.3471 -1.9200 27 1 3.8253 -1.3115 -0.1424 28 1 1.9643 -0.6532 -3.2913 29 1 0.4838 -0.0575 -2.5029 30 1 1.9658 0.9281 -2.4740 31 1 1.7435 -2.6696 -0.1691 32 1 0.3540 -2.1581 -1.1570 33 1 1.8345 -2.7551 -1.9446 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218742257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = 6.542105 kcal Electronic energy + Delta-G solvation = -13678.660160 eV Core-core repulsion = 11546.168540 eV Total energy + Delta-G solvation = -2132.491620 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.02831 -34.30064 -32.45786 -31.47442 -27.87293 -26.92168 -25.96375 -23.94577 -22.59703 -20.35275 -17.43686 -16.50754 -15.39307 -14.74655 -14.49971 -13.77315 -13.72353 -13.56167 -12.86455 -12.36943 -12.07535 -11.79855 -11.57712 -11.53577 -11.14049 -10.92435 -10.80243 -10.66230 -10.42954 -10.27551 -9.77888 -9.35553 -9.04191 -8.56000 -7.58550 -6.79397 -6.07328 -4.10076 3.32634 3.36848 3.39828 4.39786 4.63215 5.17963 5.38571 5.50810 5.64009 5.73954 5.88002 5.99505 6.09027 6.10739 6.23588 6.27569 6.36635 6.43124 6.48203 6.57832 6.60433 6.75509 6.93418 7.06592 7.52320 7.79037 7.81687 7.94882 8.24886 8.69328 9.01741 9.15809 9.57550 11.03326 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057714 B = 0.010687 C = 0.009889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.035447 B = 2619.361182 C = 2830.818683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.536 5.536 3 C 0.066 3.934 4 C 0.220 3.780 5 H 0.003 0.997 6 C -0.505 4.505 7 H 0.058 0.942 8 C 0.067 3.933 9 N -0.900 5.900 10 Si 0.899 3.101 11 H -0.288 1.288 12 H -0.276 1.276 13 H -0.278 1.278 14 N -0.683 5.683 15 C 0.068 3.932 16 C 0.109 3.891 17 C -0.167 4.167 18 C -0.138 4.138 19 H 0.061 0.939 20 H 0.059 0.941 21 H 0.021 0.979 22 H 0.060 0.940 23 H 0.033 0.967 24 H 0.264 0.736 25 H 0.363 0.637 26 H 0.054 0.946 27 H 0.019 0.981 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.511 -4.875 -2.508 9.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.062 4.062 4 C 0.112 3.888 5 H 0.020 0.980 6 C -0.545 4.545 7 H 0.076 0.924 8 C -0.134 4.134 9 N -0.541 5.541 10 Si 0.727 3.273 11 H -0.213 1.213 12 H -0.202 1.202 13 H -0.203 1.203 14 N -0.320 5.320 15 C -0.063 4.063 16 C 0.019 3.981 17 C -0.226 4.226 18 C -0.196 4.196 19 H 0.080 0.920 20 H 0.077 0.923 21 H 0.040 0.960 22 H 0.078 0.922 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.186 0.814 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.612 -4.906 -2.489 9.392 hybrid contribution 0.624 0.881 -0.043 1.080 sum -6.988 -4.025 -2.532 8.453 Atomic orbital electron populations 1.22398 0.89515 1.01067 0.99809 1.62419 1.06066 1.15882 1.41663 1.22358 0.98178 0.86502 0.99143 1.19010 0.87730 0.93313 0.88761 0.97956 1.21082 0.91758 0.91625 1.50009 0.92363 1.24973 0.96974 0.97190 0.94266 1.69671 1.03268 1.30074 1.51040 0.86551 0.77600 0.84574 0.78581 1.21338 1.20204 1.20336 1.60971 1.16071 1.08751 1.46255 1.21845 0.92410 0.93556 0.98453 1.21048 0.95588 0.92592 0.88892 1.22294 0.99207 1.03344 0.97710 1.21883 1.00177 0.95957 1.01588 0.92038 0.92256 0.96026 0.92174 0.94907 0.92604 0.81362 0.92740 0.96255 0.93131 0.94195 0.90414 0.92326 0.93001 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.81 60.07 0.53 0.86 16 2 N -0.54 -10.48 4.73 -227.00 -1.07 -11.55 16 3 C 0.07 1.46 4.46 -3.77 -0.02 1.45 16 4 C 0.22 5.70 2.55 -68.81 -0.18 5.52 16 5 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 6 C -0.51 -14.00 8.76 -34.44 -0.30 -14.30 16 7 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 8 C 0.07 1.86 5.35 -17.82 -0.10 1.76 16 9 N -0.90 -25.46 11.49 55.43 0.64 -24.83 16 10 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 N -0.68 -16.79 5.85 -107.81 -0.63 -17.42 16 15 C 0.07 1.43 5.43 -3.77 -0.02 1.41 16 16 C 0.11 2.00 0.68 -131.54 -0.09 1.91 16 17 C -0.17 -2.94 7.65 37.16 0.28 -2.66 16 18 C -0.14 -2.07 8.14 37.16 0.30 -1.77 16 19 H 0.06 0.87 6.25 -51.93 -0.32 0.54 16 20 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 21 H 0.02 0.33 6.39 -51.92 -0.33 0.00 16 22 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 23 H 0.03 0.74 6.34 -51.93 -0.33 0.41 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.36 9.64 6.72 -39.29 -0.26 9.38 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.63 6.48 -51.93 -0.34 0.30 16 30 H 0.08 1.59 5.94 -51.93 -0.31 1.28 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.70 6.36 -51.93 -0.33 0.37 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 250.42 15.07 3.77 3.77 Total: -1.00 -28.02 250.42 -7.05 -35.07 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.15 Total: 4.48 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 0.42 Total: -5.82 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -1.07 Total: -53.80 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.02 -7.05 -35.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218742257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.611 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds