Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 110.99983 * 2 1 4 4 C 1.53052 * 109.36398 * 176.81149 * 3 2 1 5 5 H 1.09005 * 109.50755 * 298.42421 * 4 3 2 6 6 C 1.50694 * 109.48917 * 178.36769 * 4 3 2 7 7 H 1.08000 * 120.00563 * 0.10770 * 6 4 3 8 8 C 1.37885 * 119.99902 * 180.10934 * 6 4 3 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46985 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47276 * 299.99832 * 10 8 6 13 13 H 1.48498 * 109.47150 * 60.00043 * 10 8 6 14 14 N 1.46961 * 109.36162 * 58.39969 * 4 3 2 15 15 C 1.46956 * 110.87998 * 300.67672 * 14 4 3 16 16 C 1.46961 * 110.99700 * 236.19895 * 2 1 3 17 17 C 1.52997 * 109.48849 * 63.22403 * 16 2 1 18 18 C 1.52999 * 109.50463 * 303.16637 * 16 2 1 19 19 H 1.08999 * 109.47597 * 183.79650 * 1 2 3 20 20 H 1.08998 * 109.47029 * 303.80639 * 1 2 3 21 21 H 1.09008 * 109.47132 * 63.80085 * 1 2 3 22 22 H 1.08997 * 109.49125 * 56.84479 * 3 2 1 23 23 H 1.09003 * 109.48602 * 296.77680 * 3 2 1 24 24 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 25 25 H 1.00907 * 110.99371 * 176.81540 * 14 4 3 26 26 H 1.09005 * 109.48641 * 179.28660 * 15 14 4 27 27 H 1.08994 * 109.49097 * 299.35449 * 15 14 4 28 28 H 1.09004 * 109.46844 * 179.88812 * 17 16 2 29 29 H 1.08996 * 109.47430 * 299.88682 * 17 16 2 30 30 H 1.09004 * 109.47331 * 59.89167 * 17 16 2 31 31 H 1.08994 * 109.47149 * 300.09537 * 18 16 2 32 32 H 1.08995 * 109.47133 * 60.10504 * 18 16 2 33 33 H 1.09003 * 109.46542 * 180.10277 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 0.0803 5 1 3.8257 0.8481 1.0106 6 6 4.0687 2.7333 0.0401 7 1 3.3934 3.5730 -0.0334 8 6 5.4298 2.9464 0.0972 9 7 6.2521 1.9240 0.1872 10 14 6.1056 4.6871 0.0466 11 1 7.5881 4.6449 0.1226 12 1 5.6929 5.3417 -1.2208 13 1 5.5731 5.4584 1.1984 14 7 4.0501 0.5658 -1.0598 15 6 3.5234 -0.8062 -1.0597 16 6 1.9956 -0.7633 -1.1401 17 6 1.5719 -0.0879 -2.4459 18 6 1.4421 -2.1891 -1.0998 19 1 -0.3634 -1.0254 0.0680 20 1 -0.3633 0.5718 0.8539 21 1 -0.3634 0.4537 -0.9222 22 1 1.6014 1.9129 0.8602 23 1 1.6938 1.8773 -0.9174 24 1 7.2096 2.0739 0.2270 25 1 5.0591 0.5658 -1.0597 26 1 3.9177 -1.3471 -1.9200 27 1 3.8253 -1.3115 -0.1424 28 1 1.9643 -0.6532 -3.2913 29 1 0.4838 -0.0575 -2.5029 30 1 1.9658 0.9281 -2.4740 31 1 1.7435 -2.6696 -0.1691 32 1 0.3540 -2.1581 -1.1570 33 1 1.8345 -2.7551 -1.9446 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218742257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = -14.058948 kcal Electronic energy + Delta-G solvation = -13679.553489 eV Core-core repulsion = 11546.168540 eV Total energy + Delta-G solvation = -2133.384948 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.61778 -36.17973 -34.12712 -33.36213 -29.61301 -28.32850 -27.51588 -25.79169 -24.22038 -22.15833 -19.06907 -18.57196 -17.09498 -16.43589 -16.27450 -15.44123 -15.28725 -15.16633 -14.59980 -13.94643 -13.68158 -13.60013 -13.02477 -12.87268 -12.77352 -12.61153 -12.50008 -12.27882 -12.07144 -11.85083 -11.54398 -11.21051 -10.93880 -10.65139 -9.12268 -8.75934 -8.17736 -6.29243 1.42852 1.44855 1.52488 2.42032 3.08815 3.13846 3.93304 3.98506 4.22316 4.29335 4.45087 4.54858 4.70367 4.72652 4.77230 4.83271 4.88547 4.96030 4.99738 5.04888 5.07608 5.21042 5.30308 5.40061 5.63422 5.76323 6.06605 6.30971 6.39980 6.62464 6.96595 7.10300 7.42607 8.91714 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057714 B = 0.010687 C = 0.009889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.035447 B = 2619.361182 C = 2830.818683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.551 5.551 3 C 0.079 3.921 4 C 0.222 3.778 5 H -0.044 1.044 6 C -0.531 4.531 7 H 0.056 0.944 8 C 0.021 3.979 9 N -0.924 5.924 10 Si 0.965 3.035 11 H -0.283 1.283 12 H -0.272 1.272 13 H -0.271 1.271 14 N -0.687 5.687 15 C 0.065 3.935 16 C 0.105 3.895 17 C -0.159 4.159 18 C -0.130 4.130 19 H 0.086 0.914 20 H 0.064 0.936 21 H 0.029 0.971 22 H 0.057 0.943 23 H 0.028 0.972 24 H 0.266 0.734 25 H 0.346 0.654 26 H 0.073 0.927 27 H 0.000 1.000 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.823 -5.201 -3.303 10.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.275 5.275 3 C -0.049 4.049 4 C 0.113 3.887 5 H -0.027 1.027 6 C -0.570 4.570 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.565 5.565 10 Si 0.791 3.209 11 H -0.208 1.208 12 H -0.197 1.197 13 H -0.197 1.197 14 N -0.321 5.321 15 C -0.066 4.066 16 C 0.015 3.985 17 C -0.217 4.217 18 C -0.188 4.188 19 H 0.104 0.896 20 H 0.083 0.917 21 H 0.048 0.952 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.075 0.925 25 H 0.167 0.833 26 H 0.091 0.909 27 H 0.018 0.982 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.956 -5.245 -3.287 10.887 hybrid contribution 1.034 0.922 0.215 1.402 sum -7.922 -4.323 -3.073 9.533 Atomic orbital electron populations 1.22485 0.86760 1.02895 1.00497 1.62369 1.08568 1.13936 1.42664 1.22036 0.95642 0.88499 0.98701 1.18884 0.90286 0.92397 0.87091 1.02686 1.21412 0.92398 0.92554 1.50652 0.92528 1.25771 0.97188 1.01178 0.93697 1.69797 1.03442 1.31976 1.51249 0.85508 0.76946 0.79746 0.78741 1.20812 1.19692 1.19667 1.60959 1.14915 1.11001 1.45235 1.22024 0.94856 0.91436 0.98270 1.21161 0.93545 0.94801 0.88952 1.22189 1.00486 1.01351 0.97687 1.21824 1.01448 0.93235 1.02252 0.89575 0.91695 0.95234 0.92408 0.95411 0.92516 0.83253 0.90858 0.98165 0.91685 0.92018 0.93761 0.92798 0.90805 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 8.81 127.69 1.12 1.74 16 2 N -0.55 -20.88 4.73 -872.11 -4.13 -25.01 16 3 C 0.08 3.57 4.46 86.31 0.39 3.95 16 4 C 0.22 11.88 2.55 44.17 0.11 11.99 16 5 H -0.04 -2.72 8.14 -2.38 -0.02 -2.74 16 6 C -0.53 -30.15 8.76 25.60 0.22 -29.92 16 7 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 8 C 0.02 1.16 5.35 84.66 0.45 1.62 16 9 N -0.92 -53.48 11.49 21.45 0.25 -53.24 16 10 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 N -0.69 -34.55 5.85 -495.00 -2.89 -37.45 16 15 C 0.06 2.70 5.43 86.31 0.47 3.16 16 16 C 0.11 3.68 0.68 3.53 0.00 3.68 16 17 C -0.16 -5.22 7.65 71.98 0.55 -4.67 16 18 C -0.13 -3.44 8.14 71.98 0.59 -2.86 16 19 H 0.09 2.08 6.25 -2.39 -0.01 2.06 16 20 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 21 H 0.03 0.81 6.39 -2.38 -0.02 0.80 16 22 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 23 H 0.03 1.27 6.34 -2.39 -0.02 1.25 16 24 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.35 19.06 6.72 -89.69 -0.60 18.45 16 26 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 27 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.75 6.48 -2.39 -0.02 1.73 16 30 H 0.04 1.76 5.94 -2.39 -0.01 1.74 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.65 6.36 -2.39 -0.02 1.64 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -61.27 250.42 -0.36 -61.64 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.48 Total: 19.29 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 3.91 Total: -11.30 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -6.78 Total: -115.69 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -61.27 -0.36 -61.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218742257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.577 kcal (2) G-P(sol) polarization free energy of solvation -61.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds