Wall clock time and date at job start Mon Mar 30 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.50640 * 2 1 4 4 C 1.53049 * 109.49035 * 120.05317 * 2 1 3 5 5 N 1.46960 * 109.36389 * 178.36692 * 4 2 1 6 6 C 1.46898 * 110.99855 * 176.81577 * 5 4 2 7 7 C 1.46957 * 110.87972 * 300.68040 * 5 4 2 8 8 H 1.08996 * 109.49111 * 299.35322 * 7 5 4 9 9 C 1.50697 * 109.48788 * 179.28672 * 7 5 4 10 10 H 1.08003 * 119.99824 * 334.83757 * 9 7 5 11 11 C 1.37878 * 120.00168 * 154.83266 * 9 7 5 12 12 N 1.31511 * 119.99928 * 186.06985 * 11 9 7 13 13 Si 1.86797 * 119.99926 * 6.06934 * 11 9 7 14 14 H 1.48507 * 109.46989 * 88.92376 * 13 11 9 15 15 H 1.48498 * 109.47281 * 208.92729 * 13 11 9 16 16 H 1.48504 * 109.47146 * 328.92969 * 13 11 9 17 17 C 1.53049 * 109.36485 * 59.32461 * 7 5 4 18 18 N 1.46954 * 109.48906 * 239.94734 * 2 1 3 19 19 C 1.46909 * 111.00013 * 56.84064 * 18 2 1 20 20 H 1.08998 * 109.46598 * 299.94289 * 1 2 3 21 21 H 1.08998 * 109.47386 * 59.94336 * 1 2 3 22 22 H 1.08998 * 109.46700 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.48782 * 58.40397 * 4 2 1 24 24 H 1.08997 * 109.50688 * 298.35112 * 4 2 1 25 25 H 1.09001 * 109.47515 * 63.70484 * 6 5 4 26 26 H 1.09003 * 109.46838 * 183.71120 * 6 5 4 27 27 H 1.09005 * 109.46849 * 303.70562 * 6 5 4 28 28 H 0.97001 * 119.99904 * 180.02562 * 12 11 9 29 29 H 1.08998 * 109.49431 * 181.63032 * 17 7 5 30 30 H 1.09001 * 109.51306 * 61.57122 * 17 7 5 31 31 H 1.08999 * 109.46731 * 60.00494 * 19 18 2 32 32 H 1.09001 * 109.47023 * 180.02562 * 19 18 2 33 33 H 1.08995 * 109.47108 * 300.00121 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7226 1.2488 5 7 3.5097 -0.7552 1.2264 6 6 4.0412 -1.3752 2.4475 7 6 4.0000 -1.4491 0.0273 8 1 3.6360 -2.4765 0.0273 9 6 5.5069 -1.4491 0.0272 10 1 6.0469 -0.6808 0.5607 11 6 6.1963 -2.4298 -0.6539 12 7 7.5059 -2.5011 -0.5568 13 14 5.2702 -3.6573 -1.7145 14 1 5.1302 -3.1161 -3.0903 15 1 6.0210 -4.9377 -1.7601 16 1 3.9230 -3.8938 -1.1362 17 6 3.4894 -0.7264 -1.2215 18 7 2.0203 -0.6938 -1.1991 19 6 1.4888 -0.0739 -2.4203 20 1 -0.3632 0.5130 0.8905 21 1 -0.3634 0.5147 -0.8894 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6545 -1.7418 1.2627 24 1 1.7022 -0.1933 2.1395 25 1 3.7239 -2.4169 2.4939 26 1 5.1301 -1.3272 2.4350 27 1 3.6640 -0.8413 3.3198 28 1 7.9910 -3.1908 -1.0363 29 1 3.8277 -1.2560 -2.1121 30 1 3.8755 0.2928 -1.2359 31 1 1.8048 0.9683 -2.4658 32 1 1.8669 -0.6070 -3.2926 33 1 0.4000 -0.1233 -2.4086 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218742729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:13 Heat of formation + Delta-G solvation = 14.708732 kcal Electronic energy + Delta-G solvation = -13637.915510 eV Core-core repulsion = 11505.778022 eV Total energy + Delta-G solvation = -2132.137488 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.82569 -35.04377 -32.90233 -31.50503 -28.80106 -27.21929 -24.82681 -23.79650 -22.48990 -20.32493 -18.83783 -16.93595 -15.35589 -15.09701 -14.47892 -13.97637 -13.94969 -13.55221 -13.07039 -12.76921 -12.33846 -11.91550 -11.68668 -11.66896 -11.32686 -11.14097 -10.85165 -10.64581 -10.49392 -9.99276 -9.94625 -9.70711 -9.16999 -8.55251 -7.77468 -7.25967 -6.10665 -4.10348 3.28198 3.36829 3.43433 4.39209 4.46599 4.83731 5.20418 5.29520 5.52791 5.61649 5.69869 5.82406 5.90389 5.99420 6.14472 6.16557 6.17779 6.25553 6.33840 6.41194 6.52190 6.57327 6.74750 6.99604 7.20875 7.44099 7.63174 7.74636 7.99136 8.14690 8.66077 8.99264 9.52735 11.01481 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037228 B = 0.014414 C = 0.011623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.940604 B = 1942.052276 C = 2408.451067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.044 0.956 4 C 0.061 3.939 5 N -0.537 5.537 6 C 0.043 3.957 7 C 0.183 3.817 8 H 0.018 0.982 9 C -0.505 4.505 10 H 0.082 0.918 11 C 0.075 3.925 12 N -0.895 5.895 13 Si 0.867 3.133 14 H -0.275 1.275 15 H -0.289 1.289 16 H -0.258 1.258 17 C 0.064 3.936 18 N -0.549 5.549 19 C 0.023 3.977 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.029 0.971 24 H 0.065 0.935 25 H 0.011 0.989 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.924 3.002 0.241 12.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 H 0.062 0.938 4 C -0.068 4.068 5 N -0.262 5.262 6 C -0.105 4.105 7 C 0.076 3.924 8 H 0.035 0.965 9 C -0.544 4.544 10 H 0.100 0.900 11 C -0.128 4.128 12 N -0.533 5.533 13 Si 0.694 3.306 14 H -0.201 1.201 15 H -0.216 1.216 16 H -0.182 1.182 17 C -0.064 4.064 18 N -0.274 5.274 19 C -0.125 4.125 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.048 0.952 24 H 0.083 0.917 25 H 0.030 0.970 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.744 2.894 0.183 12.097 hybrid contribution -0.339 -0.688 -0.760 1.080 sum -12.083 2.206 -0.578 12.296 Atomic orbital electron populations 1.21867 0.95055 1.02104 1.01150 1.21591 0.94061 0.96066 0.90711 0.93843 1.22121 0.90118 0.98438 0.96134 1.62117 1.05199 1.55157 1.03711 1.22133 1.02432 0.95269 0.90714 1.19861 0.95686 0.91705 0.85183 0.96478 1.20894 0.88044 1.12711 1.32757 0.90034 1.24956 0.94735 0.96913 0.96191 1.69900 1.06614 1.34444 1.42316 0.87040 0.80857 0.81092 0.81570 1.20110 1.21563 1.18233 1.22637 0.83411 1.00082 1.00256 1.62333 1.10990 1.52804 1.01320 1.22371 1.00019 0.96846 0.93303 0.92547 0.92685 0.92150 0.95235 0.91689 0.97029 0.89793 0.93798 0.92563 0.91785 0.94484 0.96155 0.92010 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.86 37.16 0.33 -1.59 16 2 C 0.08 1.46 2.56 -67.66 -0.17 1.29 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.06 1.12 4.90 -3.77 -0.02 1.10 16 5 N -0.54 -11.81 4.78 -236.13 -1.13 -12.93 16 6 C 0.04 0.87 9.27 60.06 0.56 1.43 16 7 C 0.18 4.50 1.52 -68.81 -0.10 4.39 16 8 H 0.02 0.46 5.70 -51.93 -0.30 0.16 16 9 C -0.51 -14.14 7.66 -34.44 -0.26 -14.41 16 10 H 0.08 2.50 7.78 -52.48 -0.41 2.09 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 13 Si 0.87 21.64 25.92 -169.99 -4.41 17.24 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.26 -6.37 6.02 56.52 0.34 -6.03 16 17 C 0.06 1.44 4.68 -3.77 -0.02 1.42 16 18 N -0.55 -10.57 4.78 -234.72 -1.12 -11.69 16 19 C 0.02 0.36 9.13 60.07 0.55 0.91 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.67 6.36 -51.93 -0.33 0.34 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 1.05 8.13 -51.93 -0.42 0.62 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 1.89 6.82 -51.93 -0.35 1.54 16 27 H 0.04 0.76 8.13 -51.93 -0.42 0.33 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.06 1.49 6.28 -51.93 -0.33 1.16 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.06 0.85 6.25 -51.93 -0.32 0.53 16 LS Contribution 252.63 15.07 3.81 3.81 Total: -1.00 -29.87 252.63 -6.78 -36.65 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -5.46 Total: -3.41 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 0.76 Total: -3.41 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -1.48 Total: -50.88 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.41 Total: 17.24 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.87 -6.78 -36.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218742729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.360 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds