Wall clock time and date at job start Mon Mar 30 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.50640 * 2 1 4 4 C 1.53049 * 109.49035 * 120.05317 * 2 1 3 5 5 N 1.46960 * 109.36389 * 178.36692 * 4 2 1 6 6 C 1.46898 * 110.99855 * 176.81577 * 5 4 2 7 7 C 1.46957 * 110.87972 * 300.68040 * 5 4 2 8 8 H 1.08996 * 109.49111 * 299.35322 * 7 5 4 9 9 C 1.50697 * 109.48788 * 179.28672 * 7 5 4 10 10 H 1.08003 * 119.99824 * 334.83757 * 9 7 5 11 11 C 1.37878 * 120.00168 * 154.83266 * 9 7 5 12 12 N 1.31511 * 119.99928 * 186.06985 * 11 9 7 13 13 Si 1.86797 * 119.99926 * 6.06934 * 11 9 7 14 14 H 1.48507 * 109.46989 * 88.92376 * 13 11 9 15 15 H 1.48498 * 109.47281 * 208.92729 * 13 11 9 16 16 H 1.48504 * 109.47146 * 328.92969 * 13 11 9 17 17 C 1.53049 * 109.36485 * 59.32461 * 7 5 4 18 18 N 1.46954 * 109.48906 * 239.94734 * 2 1 3 19 19 C 1.46909 * 111.00013 * 56.84064 * 18 2 1 20 20 H 1.08998 * 109.46598 * 299.94289 * 1 2 3 21 21 H 1.08998 * 109.47386 * 59.94336 * 1 2 3 22 22 H 1.08998 * 109.46700 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.48782 * 58.40397 * 4 2 1 24 24 H 1.08997 * 109.50688 * 298.35112 * 4 2 1 25 25 H 1.09001 * 109.47515 * 63.70484 * 6 5 4 26 26 H 1.09003 * 109.46838 * 183.71120 * 6 5 4 27 27 H 1.09005 * 109.46849 * 303.70562 * 6 5 4 28 28 H 0.97001 * 119.99904 * 180.02562 * 12 11 9 29 29 H 1.08998 * 109.49431 * 181.63032 * 17 7 5 30 30 H 1.09001 * 109.51306 * 61.57122 * 17 7 5 31 31 H 1.08999 * 109.46731 * 60.00494 * 19 18 2 32 32 H 1.09001 * 109.47023 * 180.02562 * 19 18 2 33 33 H 1.08995 * 109.47108 * 300.00121 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7226 1.2488 5 7 3.5097 -0.7552 1.2264 6 6 4.0412 -1.3752 2.4475 7 6 4.0000 -1.4491 0.0273 8 1 3.6360 -2.4765 0.0273 9 6 5.5069 -1.4491 0.0272 10 1 6.0469 -0.6808 0.5607 11 6 6.1963 -2.4298 -0.6539 12 7 7.5059 -2.5011 -0.5568 13 14 5.2702 -3.6573 -1.7145 14 1 5.1302 -3.1161 -3.0903 15 1 6.0210 -4.9377 -1.7601 16 1 3.9230 -3.8938 -1.1362 17 6 3.4894 -0.7264 -1.2215 18 7 2.0203 -0.6938 -1.1991 19 6 1.4888 -0.0739 -2.4203 20 1 -0.3632 0.5130 0.8905 21 1 -0.3634 0.5147 -0.8894 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6545 -1.7418 1.2627 24 1 1.7022 -0.1933 2.1395 25 1 3.7239 -2.4169 2.4939 26 1 5.1301 -1.3272 2.4350 27 1 3.6640 -0.8413 3.3198 28 1 7.9910 -3.1908 -1.0363 29 1 3.8277 -1.2560 -2.1121 30 1 3.8755 0.2928 -1.2359 31 1 1.8048 0.9683 -2.4658 32 1 1.8669 -0.6070 -3.2926 33 1 0.4000 -0.1233 -2.4086 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218742729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:13 Heat of formation + Delta-G solvation = -8.633926 kcal Electronic energy + Delta-G solvation = -13638.927723 eV Core-core repulsion = 11505.778022 eV Total energy + Delta-G solvation = -2133.149702 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.40279 -36.65685 -34.87206 -33.19391 -30.44775 -28.76316 -26.37433 -25.53723 -24.09578 -21.95758 -20.47702 -19.06632 -17.09012 -16.58834 -16.03049 -15.79152 -15.51247 -15.23669 -14.76455 -14.54116 -13.83523 -13.45972 -13.21025 -13.00780 -12.80888 -12.68865 -12.56763 -12.26053 -12.06474 -11.81745 -11.74189 -11.50906 -11.13579 -10.69820 -9.27723 -9.00486 -8.33003 -6.36727 1.29550 1.32521 1.43939 2.29662 2.90550 3.11354 3.28695 3.97031 4.17083 4.26012 4.37958 4.48733 4.56607 4.63249 4.69258 4.71584 4.79074 4.83087 4.92418 4.96292 4.97007 5.14578 5.20120 5.33213 5.40075 5.51364 6.00444 6.12293 6.17773 6.41729 6.66708 6.73542 7.29996 8.83001 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037228 B = 0.014414 C = 0.011623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.940604 B = 1942.052276 C = 2408.451067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.080 3.920 3 H 0.036 0.964 4 C 0.059 3.941 5 N -0.554 5.554 6 C 0.047 3.953 7 C 0.190 3.810 8 H 0.002 0.998 9 C -0.505 4.505 10 H 0.039 0.961 11 C 0.023 3.977 12 N -0.940 5.940 13 Si 0.930 3.070 14 H -0.263 1.263 15 H -0.285 1.285 16 H -0.252 1.252 17 C 0.074 3.926 18 N -0.559 5.559 19 C 0.022 3.978 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.026 0.974 24 H 0.094 0.906 25 H 0.010 0.990 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.267 0.733 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.024 0.976 32 H 0.062 0.938 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.901 3.089 -0.142 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 H 0.054 0.946 4 C -0.069 4.069 5 N -0.278 5.278 6 C -0.101 4.101 7 C 0.081 3.919 8 H 0.019 0.981 9 C -0.543 4.543 10 H 0.057 0.943 11 C -0.176 4.176 12 N -0.580 5.580 13 Si 0.755 3.245 14 H -0.188 1.188 15 H -0.211 1.211 16 H -0.176 1.176 17 C -0.055 4.055 18 N -0.284 5.284 19 C -0.126 4.126 20 H 0.097 0.903 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.044 0.956 24 H 0.112 0.888 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.750 2.999 -0.196 15.053 hybrid contribution 0.588 -0.625 -0.548 1.018 sum -14.162 2.374 -0.744 14.379 Atomic orbital electron populations 1.21802 0.91438 1.02711 1.03141 1.21750 0.96789 0.95014 0.89247 0.94618 1.22293 0.87378 0.98907 0.98321 1.62068 1.07928 1.54763 1.03061 1.22084 1.00505 0.95850 0.91691 1.19633 0.93242 0.91486 0.87519 0.98077 1.21015 0.90223 1.11395 1.31714 0.94295 1.25714 0.95415 0.98972 0.97501 1.70031 1.08323 1.35769 1.43868 0.86027 0.79605 0.78699 0.80179 1.18785 1.21086 1.17641 1.22270 0.86213 0.98520 0.98466 1.62303 1.08343 1.54250 1.03543 1.22474 1.01683 0.96772 0.91628 0.90269 0.91110 0.92150 0.95599 0.88752 0.97103 0.93107 0.90147 0.92339 0.92812 0.96080 0.95712 0.91958 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.86 71.98 0.64 -2.31 16 2 C 0.08 2.54 2.56 44.92 0.12 2.65 16 3 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 4 C 0.06 2.03 4.90 86.31 0.42 2.45 16 5 N -0.55 -24.00 4.78 -900.97 -4.30 -28.30 16 6 C 0.05 1.90 9.27 127.69 1.18 3.09 16 7 C 0.19 9.33 1.52 44.17 0.07 9.40 16 8 H 0.00 0.09 5.70 -2.39 -0.01 0.07 16 9 C -0.50 -29.25 7.66 25.60 0.20 -29.06 16 10 H 0.04 2.53 7.78 -2.91 -0.02 2.51 16 11 C 0.02 1.33 5.47 84.66 0.46 1.79 16 12 N -0.94 -58.59 13.96 21.45 0.30 -58.29 16 13 Si 0.93 45.12 25.92 68.60 1.78 46.90 16 14 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 16 H -0.25 -11.92 6.02 99.48 0.60 -11.32 16 17 C 0.07 3.29 4.68 86.31 0.40 3.69 16 18 N -0.56 -20.20 4.78 -896.53 -4.29 -24.49 16 19 C 0.02 0.62 9.13 127.69 1.17 1.79 16 20 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.07 1.36 6.36 -2.39 -0.02 1.34 16 22 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.09 2.68 8.13 -2.39 -0.02 2.66 16 25 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.05 2.37 6.82 -2.39 -0.02 2.35 16 27 H 0.08 2.63 8.13 -2.38 -0.02 2.61 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.05 2.46 6.28 -2.39 -0.01 2.45 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 33 H 0.09 2.09 6.25 -2.39 -0.01 2.08 16 Total: -1.00 -65.91 252.63 -0.91 -66.82 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 0.95 Total: 3.87 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 4.66 Total: -6.50 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -8.29 Total: -111.08 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.78 Total: 46.90 kcal Total: -65.91 -0.91 -66.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218742729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.183 kcal (2) G-P(sol) polarization free energy of solvation -65.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds