Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.49464 * 2 1 4 4 C 1.53049 * 109.48865 * 239.93176 * 2 1 3 5 5 N 1.46962 * 109.36720 * 181.63289 * 4 2 1 6 6 C 1.46895 * 111.00353 * 183.18941 * 5 4 2 7 7 C 1.46961 * 110.87635 * 59.32117 * 5 4 2 8 8 C 1.53049 * 109.36464 * 300.68035 * 7 5 4 9 9 H 1.09000 * 109.50755 * 298.42161 * 8 7 5 10 10 C 1.50702 * 109.48459 * 178.36842 * 8 7 5 11 11 H 1.07999 * 120.00039 * 268.89915 * 10 8 7 12 12 C 1.37881 * 120.00009 * 88.90656 * 10 8 7 13 13 N 1.31516 * 119.99593 * 353.57968 * 12 10 8 14 14 Si 1.86793 * 119.99955 * 173.30385 * 12 10 8 15 15 H 1.48496 * 109.47107 * 90.00469 * 14 12 10 16 16 H 1.48500 * 109.47038 * 209.99970 * 14 12 10 17 17 H 1.48494 * 109.47417 * 329.99803 * 14 12 10 18 18 N 1.46951 * 109.36426 * 58.40577 * 8 7 5 19 19 C 1.46895 * 111.00067 * 176.81070 * 18 8 7 20 20 H 1.08997 * 109.47311 * 299.95886 * 1 2 3 21 21 H 1.09001 * 109.47035 * 59.95641 * 1 2 3 22 22 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.49096 * 301.60091 * 4 2 1 24 24 H 1.08999 * 109.49122 * 61.66954 * 4 2 1 25 25 H 1.09008 * 109.46941 * 60.00153 * 6 5 4 26 26 H 1.08995 * 109.47387 * 179.97438 * 6 5 4 27 27 H 1.08999 * 109.47212 * 300.00379 * 6 5 4 28 28 H 1.09003 * 109.48547 * 180.71285 * 7 5 4 29 29 H 1.09003 * 109.48787 * 60.65075 * 7 5 4 30 30 H 0.96997 * 120.00390 * 354.27022 * 13 12 10 31 31 H 1.09007 * 109.47477 * 59.99608 * 19 18 8 32 32 H 1.09006 * 109.47788 * 179.97438 * 19 18 8 33 33 H 1.09006 * 109.47405 * 299.99914 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0274 0.0000 4 6 2.0405 -0.7229 -1.2486 5 7 3.5096 -0.7556 -1.2263 6 6 4.0411 -1.3758 -2.4473 7 6 3.9998 -1.4492 -0.0270 8 6 3.4892 -0.7263 1.2216 9 1 3.8755 0.2928 1.2357 10 6 3.9571 -1.4585 2.4530 11 1 3.3405 -2.2304 2.8892 12 6 5.1724 -1.1428 3.0227 13 7 5.9791 -0.2947 2.4230 14 14 5.6695 -1.9137 4.6498 15 1 6.3995 -3.1813 4.3945 16 1 6.5499 -0.9767 5.3930 17 1 4.4546 -2.1957 5.4557 18 7 2.0203 -0.6937 1.1993 19 6 1.4888 -0.0735 2.4202 20 1 -0.3634 0.5132 0.8903 21 1 -0.3633 0.5145 -0.8896 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6543 -1.7421 -1.2623 24 1 1.7022 -0.1934 -2.1393 25 1 3.7174 -0.8028 -3.3163 26 1 5.1301 -1.3867 -2.4049 27 1 3.6699 -2.3975 -2.5270 28 1 5.0899 -1.4493 -0.0270 29 1 3.6358 -2.4767 -0.0268 30 1 5.7580 0.0448 1.5417 31 1 1.8600 0.9483 2.5000 32 1 0.3997 -0.0618 2.3775 33 1 1.8124 -0.6465 3.2893 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218742799.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = -14.829806 kcal Electronic energy + Delta-G solvation = -13624.865905 eV Core-core repulsion = 11491.447530 eV Total energy + Delta-G solvation = -2133.418375 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.43354 -36.55148 -35.52884 -32.66023 -30.06113 -27.95425 -26.93412 -26.11735 -23.38799 -22.53048 -20.58838 -18.85238 -16.82739 -16.68827 -16.29089 -15.68080 -15.59785 -15.38961 -14.70511 -14.04183 -13.70693 -13.38358 -13.23728 -13.02174 -12.83942 -12.64341 -12.48196 -12.38074 -12.07074 -11.94785 -11.87420 -11.32440 -10.71747 -10.44873 -9.33722 -9.08133 -8.61579 -6.35656 1.53059 1.61052 1.79639 2.55179 2.98083 3.14894 3.31158 3.92544 4.12663 4.22348 4.34114 4.41367 4.48188 4.57219 4.60262 4.67860 4.72755 4.79639 4.88966 4.90265 5.04741 5.06585 5.19368 5.24476 5.41327 5.80891 5.98333 6.07959 6.18989 6.46650 6.47328 6.73669 7.46112 8.73819 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037144 B = 0.013041 C = 0.010319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.635476 B = 2146.621624 C = 2712.827535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.070 3.930 3 H 0.017 0.983 4 C 0.070 3.930 5 N -0.569 5.569 6 C 0.028 3.972 7 C 0.087 3.913 8 C 0.208 3.792 9 H -0.030 1.030 10 C -0.592 4.592 11 H 0.049 0.951 12 C -0.027 4.027 13 N -0.934 5.934 14 Si 1.116 2.884 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.270 1.270 18 N -0.542 5.542 19 C 0.046 3.954 20 H 0.062 0.938 21 H 0.081 0.919 22 H 0.062 0.938 23 H 0.034 0.966 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.026 0.974 28 H 0.041 0.959 29 H 0.016 0.984 30 H 0.257 0.743 31 H -0.005 1.005 32 H 0.086 0.914 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 -1.014 -5.850 10.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.039 4.039 3 H 0.035 0.965 4 C -0.058 4.058 5 N -0.294 5.294 6 C -0.119 4.119 7 C -0.042 4.042 8 C 0.100 3.900 9 H -0.013 1.013 10 C -0.630 4.630 11 H 0.067 0.933 12 C -0.226 4.226 13 N -0.571 5.571 14 Si 0.937 3.063 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.195 1.195 18 N -0.267 5.267 19 C -0.102 4.102 20 H 0.080 0.920 21 H 0.100 0.900 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.117 0.883 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.014 0.986 32 H 0.104 0.896 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.652 -1.003 -4.719 9.046 hybrid contribution -0.660 0.135 -1.181 1.360 sum -8.312 -0.868 -5.900 10.230 Atomic orbital electron populations 1.21780 0.91591 1.02727 1.02801 1.21827 0.96970 0.94511 0.90594 0.96546 1.22187 0.86530 0.99201 0.97890 1.62249 1.09566 1.54517 1.03073 1.22365 1.00221 0.97290 0.92067 1.22093 0.97552 0.94811 0.89696 1.19255 0.84423 0.92946 0.93366 1.01276 1.22075 1.05782 1.22519 1.12668 0.93253 1.27266 0.93278 0.95343 1.06690 1.70860 1.39132 1.31048 1.16068 0.82958 0.76196 0.75564 0.71536 1.19953 1.20965 1.19514 1.62237 1.09692 1.52673 1.02129 1.22147 0.99522 0.95290 0.93238 0.91956 0.90000 0.91861 0.94776 0.88306 0.89280 0.92223 0.95520 0.94044 0.96581 0.93240 0.98620 0.89605 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 8.87 71.98 0.64 -2.92 16 2 C 0.07 2.59 2.56 44.92 0.12 2.71 16 3 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 4 C 0.07 2.41 4.90 86.31 0.42 2.84 16 5 N -0.57 -22.96 4.97 -921.92 -4.58 -27.54 16 6 C 0.03 0.90 9.60 127.69 1.23 2.13 16 7 C 0.09 4.26 4.81 86.31 0.41 4.67 16 8 C 0.21 11.03 1.58 44.18 0.07 11.10 16 9 H -0.03 -1.85 6.95 -2.39 -0.02 -1.87 16 10 C -0.59 -33.67 7.02 25.60 0.18 -33.49 16 11 H 0.05 2.83 7.67 -2.91 -0.02 2.81 16 12 C -0.03 -1.55 5.45 84.66 0.46 -1.09 16 13 N -0.93 -57.82 13.55 21.45 0.29 -57.53 16 14 Si 1.12 50.59 29.91 68.60 2.05 52.64 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 N -0.54 -24.38 4.59 -875.71 -4.02 -28.40 16 19 C 0.05 1.92 8.91 127.69 1.14 3.06 16 20 H 0.06 1.62 6.27 -2.39 -0.01 1.60 16 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 25 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.06 1.92 8.13 -2.39 -0.02 1.90 16 27 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.04 2.20 7.71 -2.39 -0.02 2.18 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.26 16.37 6.41 -92.71 -0.59 15.78 16 31 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 32 H 0.09 2.87 6.04 -2.38 -0.01 2.85 16 33 H 0.06 2.58 6.90 -2.38 -0.02 2.56 16 Total: -1.00 -65.90 257.41 -0.36 -66.26 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.23 Total: 5.56 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 4.67 Total: -10.99 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -8.31 Total: -113.47 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Total: -65.90 -0.36 -66.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218742799.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.433 kcal (2) G-P(sol) polarization free energy of solvation -65.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds