Wall clock time and date at job start Mon Mar 30 2020 01:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46965 * 111.00022 * 2 1 4 4 H 1.08993 * 109.49237 * 296.78426 * 3 2 1 5 5 C 1.50704 * 109.48392 * 56.84925 * 3 2 1 6 6 H 1.07996 * 119.99979 * 35.24442 * 5 3 2 7 7 C 1.37873 * 119.99792 * 215.24274 * 5 3 2 8 8 N 1.31512 * 119.99951 * 185.83798 * 7 5 3 9 9 Si 1.86806 * 120.00101 * 5.83605 * 7 5 3 10 10 H 1.48503 * 109.46816 * 84.77103 * 9 7 5 11 11 H 1.48495 * 109.47134 * 204.77125 * 9 7 5 12 12 H 1.48500 * 109.47094 * 324.77252 * 9 7 5 13 13 C 1.53049 * 109.36329 * 176.81115 * 3 2 1 14 14 N 1.46960 * 109.36355 * 58.40673 * 13 3 2 15 15 C 1.46956 * 110.88014 * 300.67836 * 14 13 3 16 16 C 1.46956 * 110.99993 * 236.20910 * 2 1 3 17 17 C 1.53003 * 109.48641 * 303.15190 * 16 2 1 18 18 C 1.52993 * 109.49334 * 63.19527 * 16 2 1 19 19 H 1.09000 * 109.47395 * 56.03539 * 1 2 3 20 20 H 1.08996 * 109.47550 * 176.04372 * 1 2 3 21 21 H 1.09000 * 109.47151 * 296.04200 * 1 2 3 22 22 H 0.97003 * 120.00006 * 180.02562 * 8 7 5 23 23 H 1.09001 * 109.49022 * 178.36935 * 13 3 2 24 24 H 1.08995 * 109.49245 * 298.43761 * 13 3 2 25 25 H 1.00898 * 110.99766 * 176.80616 * 14 13 3 26 26 H 1.09000 * 109.48641 * 299.35383 * 15 14 13 27 27 H 1.09001 * 109.50706 * 179.30176 * 15 14 13 28 28 H 1.08997 * 109.47211 * 60.00178 * 17 16 2 29 29 H 1.08998 * 109.47647 * 179.97438 * 17 16 2 30 30 H 1.08997 * 109.47289 * 300.00032 * 17 16 2 31 31 H 1.09002 * 109.47310 * 60.00041 * 18 16 2 32 32 H 1.08998 * 109.47979 * 180.02562 * 18 16 2 33 33 H 1.09002 * 109.46939 * 300.00405 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 1 1.6937 1.8775 -0.9172 5 6 1.4504 2.1197 1.1895 6 1 1.2888 1.6034 2.1241 7 6 1.1580 3.4630 1.0845 8 7 0.7919 4.1415 2.1499 9 14 1.2819 4.3192 -0.5712 10 1 0.0168 4.1256 -1.3244 11 1 1.5160 5.7706 -0.3616 12 1 2.4113 3.7421 -1.3436 13 6 3.5234 1.3291 0.0803 14 7 4.0500 0.5660 -1.0599 15 6 3.5233 -0.8060 -1.0600 16 6 1.9956 -0.7630 -1.1402 17 6 1.4421 -2.1889 -1.0995 18 6 1.5713 -0.0879 -2.4459 19 1 -0.3634 0.5741 -0.8523 20 1 -0.3634 -1.0251 -0.0709 21 1 -0.3633 0.4512 0.9233 22 1 0.5859 5.0865 2.0759 23 1 3.9178 2.3449 0.0513 24 1 3.8253 0.8479 1.0105 25 1 5.0590 0.5661 -1.0599 26 1 3.8252 -1.3114 -0.1427 27 1 3.9177 -1.3471 -1.9200 28 1 0.3539 -2.1579 -1.1547 29 1 1.8324 -2.7545 -1.9455 30 1 1.7451 -2.6699 -0.1695 31 1 1.9664 0.9276 -2.4750 32 1 1.9617 -0.6543 -3.2915 33 1 0.4832 -0.0561 -2.5017 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218743305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:24 Heat of formation + Delta-G solvation = 11.901727 kcal Electronic energy + Delta-G solvation = -13902.074435 eV Core-core repulsion = 11769.815226 eV Total energy + Delta-G solvation = -2132.259209 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.16096 -33.97663 -33.46186 -31.50606 -27.99412 -26.85747 -25.76983 -24.91864 -21.94348 -20.46643 -17.58424 -16.90657 -15.74616 -15.07326 -14.12768 -14.08064 -13.85215 -13.42311 -13.08094 -12.54758 -12.17823 -12.01700 -11.67367 -11.41661 -11.10316 -11.04773 -10.73308 -10.61824 -10.55087 -9.96293 -9.78894 -9.61391 -9.12142 -8.57594 -7.84400 -7.16804 -6.10638 -4.10395 3.27889 3.36585 3.42865 4.40220 4.78775 4.83774 5.26765 5.29095 5.59543 5.63447 5.92603 5.98112 6.00822 6.06277 6.19194 6.32967 6.37289 6.45654 6.48215 6.53937 6.56997 6.77209 6.83842 7.04114 7.25177 7.43196 7.74986 7.92177 8.06931 8.21873 8.68326 9.00659 9.53784 11.01886 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041035 B = 0.014468 C = 0.013444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.184523 B = 1934.814342 C = 2082.273557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.525 5.525 3 C 0.186 3.814 4 H 0.016 0.984 5 C -0.504 4.504 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.895 5.895 9 Si 0.868 3.132 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.259 1.259 13 C 0.067 3.933 14 N -0.699 5.699 15 C 0.077 3.923 16 C 0.100 3.900 17 C -0.137 4.137 18 C -0.169 4.169 19 H 0.013 0.987 20 H 0.048 0.952 21 H 0.078 0.922 22 H 0.264 0.736 23 H 0.066 0.934 24 H 0.031 0.969 25 H 0.328 0.672 26 H 0.031 0.969 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -8.539 -7.528 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.249 5.249 3 C 0.079 3.921 4 H 0.034 0.966 5 C -0.543 4.543 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.695 3.305 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.184 1.184 13 C -0.062 4.062 14 N -0.328 5.328 15 C -0.053 4.053 16 C 0.009 3.991 17 C -0.195 4.195 18 C -0.228 4.228 19 H 0.031 0.969 20 H 0.067 0.933 21 H 0.097 0.903 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.144 0.856 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.597 -8.340 -7.451 11.481 hybrid contribution 0.256 0.657 -0.844 1.100 sum 2.853 -7.683 -8.295 11.661 Atomic orbital electron populations 1.22206 0.88382 0.98918 1.01542 1.62452 1.07394 1.16463 1.38614 1.19765 0.90344 0.85296 0.96688 0.96602 1.20885 1.42487 0.93549 0.97401 0.90244 1.25004 0.94434 0.97196 0.96135 1.69898 1.46154 1.08777 1.28441 0.86989 0.79484 0.78701 0.85351 1.20330 1.21496 1.18370 1.22384 0.97745 0.96437 0.89616 1.60678 1.11702 1.13584 1.46885 1.21866 0.94318 0.89925 0.99240 1.21072 0.93962 0.93762 0.90313 1.21877 1.00946 0.95495 1.01220 1.22332 1.00305 1.02513 0.97623 0.96888 0.93335 0.90293 0.92577 0.91567 0.95056 0.85610 0.95080 0.91833 0.92380 0.93119 0.92276 0.91233 0.93480 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 8.39 60.06 0.50 1.27 16 2 N -0.52 -11.24 4.54 -220.47 -1.00 -12.24 16 3 C 0.19 4.47 1.25 -68.80 -0.09 4.38 16 4 H 0.02 0.41 3.45 -51.93 -0.18 0.23 16 5 C -0.50 -14.02 7.57 -34.44 -0.26 -14.28 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 7 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.00 13.96 55.43 0.77 -26.22 16 9 Si 0.87 21.65 27.02 -169.99 -4.59 17.06 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.26 -6.34 6.78 56.52 0.38 -5.96 16 13 C 0.07 1.48 5.98 -3.77 -0.02 1.45 16 14 N -0.70 -12.84 6.22 -113.64 -0.71 -13.55 16 15 C 0.08 1.29 5.43 -3.77 -0.02 1.27 16 16 C 0.10 1.78 0.68 -131.55 -0.09 1.69 16 17 C -0.14 -2.03 8.17 37.16 0.30 -1.72 16 18 C -0.17 -2.99 7.65 37.15 0.28 -2.71 16 19 H 0.01 0.26 6.79 -51.93 -0.35 -0.09 16 20 H 0.05 0.84 5.83 -51.93 -0.30 0.54 16 21 H 0.08 1.78 7.16 -51.93 -0.37 1.41 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.33 5.11 8.90 -39.29 -0.35 4.76 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.83 6.19 -51.93 -0.32 0.51 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.41 5.95 -51.93 -0.31 1.11 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.82 6.65 -51.93 -0.35 0.47 16 LS Contribution 247.60 15.07 3.73 3.73 Total: -1.00 -29.62 247.60 -6.35 -35.97 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.07 Total: 1.85 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 0.51 Total: -6.60 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.93 Total: -52.01 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.59 Total: 17.06 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.62 -6.35 -35.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218743305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.872 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds