Wall clock time and date at job start Mon Mar 30 2020 01:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46953 * 111.00236 * 2 1 4 4 H 1.08997 * 109.48869 * 63.22316 * 3 2 1 5 5 C 1.50703 * 109.49308 * 303.15926 * 3 2 1 6 6 H 1.08001 * 119.99654 * 0.10434 * 5 3 2 7 7 C 1.37870 * 120.00378 * 180.10795 * 5 3 2 8 8 N 1.31519 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00352 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47558 * 89.99744 * 9 7 5 11 11 H 1.48501 * 109.47595 * 209.99998 * 9 7 5 12 12 H 1.48504 * 109.46969 * 330.00050 * 9 7 5 13 13 C 1.53056 * 109.36571 * 183.19295 * 3 2 1 14 14 N 1.46963 * 109.36215 * 301.59782 * 13 3 2 15 15 C 1.46956 * 110.87582 * 59.32405 * 14 13 3 16 16 C 1.46954 * 111.00171 * 123.80569 * 2 1 3 17 17 C 1.52999 * 109.48683 * 296.77543 * 16 2 1 18 18 C 1.52998 * 109.48970 * 56.84387 * 16 2 1 19 19 H 1.08998 * 109.47042 * 63.94876 * 1 2 3 20 20 H 1.08997 * 109.47262 * 183.94912 * 1 2 3 21 21 H 1.09003 * 109.46625 * 303.95381 * 1 2 3 22 22 H 0.97005 * 119.99560 * 179.97438 * 8 7 5 23 23 H 1.08994 * 109.49121 * 61.56772 * 13 3 2 24 24 H 1.08998 * 109.48697 * 181.63542 * 13 3 2 25 25 H 1.00897 * 110.99846 * 183.18597 * 14 13 3 26 26 H 1.09004 * 109.48845 * 180.71235 * 15 14 13 27 27 H 1.08997 * 109.49356 * 60.64660 * 15 14 13 28 28 H 1.08999 * 109.47048 * 59.99932 * 17 16 2 29 29 H 1.08999 * 109.47113 * 180.02562 * 17 16 2 30 30 H 1.09000 * 109.47161 * 299.99757 * 17 16 2 31 31 H 1.08993 * 109.47380 * 59.99959 * 18 16 2 32 32 H 1.09004 * 109.46932 * 180.02562 * 18 16 2 33 33 H 1.09000 * 109.46542 * 299.99855 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 1 1.6938 1.8773 0.9173 5 6 1.4505 2.1199 -1.1893 6 1 0.7784 1.6264 -1.8758 7 6 1.8097 3.4340 -1.4011 8 7 2.6285 4.0347 -0.5654 9 14 1.1333 4.3613 -2.8748 10 1 -0.1384 5.0293 -2.4984 11 1 2.1186 5.3830 -3.3116 12 1 0.8821 3.4089 -3.9862 13 6 3.5235 1.3290 -0.0804 14 7 4.0502 0.5657 1.0597 15 6 3.5235 -0.8062 1.0595 16 6 1.9957 -0.7633 1.1400 17 6 1.5720 -0.0880 2.4458 18 6 1.4422 -2.1891 1.0990 19 1 -0.3633 0.4513 -0.9232 20 1 -0.3633 -1.0252 0.0708 21 1 -0.3633 0.5740 0.8525 22 1 2.8815 4.9592 -0.7147 23 1 3.8254 0.8479 -1.0107 24 1 3.9178 2.3447 -0.0513 25 1 5.0592 0.5657 1.0596 26 1 3.9178 -1.3472 1.9198 27 1 3.8253 -1.3116 0.1422 28 1 0.4839 -0.0558 2.5019 29 1 1.9631 -0.6541 3.2912 30 1 1.9675 0.9273 2.4748 31 1 1.7451 -2.6699 0.1690 32 1 1.8327 -2.7548 1.9450 33 1 0.3540 -2.1580 1.1544 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218743349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:26 Heat of formation + Delta-G solvation = 12.472222 kcal Electronic energy + Delta-G solvation = -13837.579894 eV Core-core repulsion = 11705.345424 eV Total energy + Delta-G solvation = -2132.234470 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.94937 -33.79873 -33.44384 -31.20632 -27.45711 -26.67045 -25.56601 -24.96982 -21.86547 -20.53413 -17.30462 -16.50497 -15.39670 -14.98037 -14.25879 -13.88187 -13.54265 -13.34858 -12.97232 -12.35874 -11.93651 -11.71478 -11.53935 -11.34890 -10.96657 -10.88635 -10.64471 -10.47607 -10.28233 -10.03804 -9.97882 -9.39089 -8.87042 -8.46064 -7.53709 -7.01240 -6.01698 -4.06075 3.30360 3.37075 3.41107 4.40368 5.00500 5.10311 5.32493 5.45334 5.74099 5.79706 6.03623 6.07855 6.16342 6.21971 6.32077 6.45304 6.48212 6.55066 6.69324 6.82012 6.86055 6.97735 7.07150 7.44853 7.69543 7.79710 7.95775 8.18214 8.25369 8.41413 8.68430 9.02409 9.58998 11.04965 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047670 B = 0.012608 C = 0.011036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.227072 B = 2220.332240 C = 2536.645981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.531 5.531 3 C 0.220 3.780 4 H 0.014 0.986 5 C -0.507 4.507 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.066 3.934 14 N -0.695 5.695 15 C 0.075 3.925 16 C 0.104 3.896 17 C -0.167 4.167 18 C -0.138 4.138 19 H 0.070 0.930 20 H 0.046 0.954 21 H 0.015 0.985 22 H 0.261 0.739 23 H 0.011 0.989 24 H 0.106 0.894 25 H 0.324 0.676 26 H 0.059 0.941 27 H 0.025 0.975 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.243 -7.720 2.971 8.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.256 5.256 3 C 0.114 3.886 4 H 0.031 0.969 5 C -0.546 4.546 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.062 4.062 14 N -0.325 5.325 15 C -0.055 4.055 16 C 0.013 3.987 17 C -0.225 4.225 18 C -0.196 4.196 19 H 0.088 0.912 20 H 0.065 0.935 21 H 0.034 0.966 22 H 0.071 0.929 23 H 0.029 0.971 24 H 0.124 0.876 25 H 0.140 0.860 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.468 -7.523 2.991 8.109 hybrid contribution -0.062 0.588 -0.770 0.971 sum -0.529 -6.935 2.221 7.301 Atomic orbital electron populations 1.22242 0.89236 0.98852 1.00985 1.62429 1.06714 1.17639 1.38829 1.19278 0.90332 0.82450 0.96573 0.96881 1.21182 1.27911 0.95760 1.09718 0.91853 1.24956 0.95183 0.97479 0.96568 1.69887 1.34406 1.12220 1.36490 0.86523 0.78631 0.79526 0.82891 1.20757 1.21254 1.19896 1.22316 0.97835 0.98430 0.87654 1.60709 1.11321 1.12684 1.47743 1.21863 0.94250 0.90701 0.98688 1.21006 0.94069 0.93330 0.90290 1.22311 0.99941 1.02955 0.97332 1.21887 1.00740 0.95869 1.01075 0.91177 0.93515 0.96645 0.92908 0.97114 0.87631 0.86047 0.92289 0.95647 0.93819 0.93812 0.90621 0.92467 0.93189 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 8.39 60.06 0.50 1.22 16 2 N -0.53 -11.83 4.54 -220.46 -1.00 -12.84 16 3 C 0.22 5.65 1.56 -68.81 -0.11 5.54 16 4 H 0.01 0.39 6.35 -51.93 -0.33 0.06 16 5 C -0.51 -13.97 7.97 -34.44 -0.27 -14.24 16 6 H 0.06 1.75 6.46 -52.49 -0.34 1.41 16 7 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 8 N -0.89 -25.32 11.34 55.43 0.63 -24.69 16 9 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.07 1.63 5.75 -3.76 -0.02 1.61 16 14 N -0.69 -14.34 6.22 -113.63 -0.71 -15.05 16 15 C 0.08 1.40 5.43 -3.76 -0.02 1.38 16 16 C 0.10 1.97 0.68 -131.54 -0.09 1.88 16 17 C -0.17 -3.14 7.65 37.16 0.28 -2.85 16 18 C -0.14 -2.15 8.17 37.16 0.30 -1.85 16 19 H 0.07 1.50 6.43 -51.93 -0.33 1.17 16 20 H 0.05 0.81 5.83 -51.93 -0.30 0.51 16 21 H 0.02 0.32 6.80 -51.93 -0.35 -0.04 16 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.11 2.85 6.12 -51.93 -0.32 2.53 16 25 H 0.32 5.88 8.90 -39.29 -0.35 5.53 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.79 6.65 -51.93 -0.35 0.45 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.66 5.94 -51.93 -0.31 1.35 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.84 6.19 -51.93 -0.32 0.52 16 LS Contribution 246.70 15.07 3.72 3.72 Total: -1.00 -28.45 246.70 -6.87 -35.32 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.97 Total: 2.99 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 0.48 Total: -5.76 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -1.08 Total: -52.57 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.45 -6.87 -35.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218743349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.795 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds